mRNA_H-paniculata_contig4477.11285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4477.11285.1
Unique NamemRNA_H-paniculata_contig4477.11285.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4477.11285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4477contigH-paniculata_contig4477:193..915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size723
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4477.11285.1prot_H-paniculata_contig4477.11285.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4477 366..773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.0653684-UTR-H-paniculata_contig4477:192..3651622930346.0653684-UTR-H-paniculata_contig4477:192..365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4477 193..365 +
1691481251.0242884-UTR-H-paniculata_contig4477:192..3651691481251.0242884-UTR-H-paniculata_contig4477:192..365Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4477 193..365 +
1622930346.0909557-UTR-H-paniculata_contig4477:773..9151622930346.0909557-UTR-H-paniculata_contig4477:773..915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4477 774..915 +
1691481251.047866-UTR-H-paniculata_contig4477:773..9151691481251.047866-UTR-H-paniculata_contig4477:773..915Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4477 774..915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930346.078367-CDS-H-paniculata_contig4477:365..7731622930346.078367-CDS-H-paniculata_contig4477:365..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4477 366..773 +
1691481251.0375478-CDS-H-paniculata_contig4477:365..7731691481251.0375478-CDS-H-paniculata_contig4477:365..773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4477 366..773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4477.11285.1

>prot_H-paniculata_contig4477.11285.1 ID=prot_H-paniculata_contig4477.11285.1|Name=mRNA_H-paniculata_contig4477.11285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MVEKHRRRRSRKAGINVCVIVKVDVAHPANSRYLGRKGNANKDSKDCSPH
FLLSIFFPFFPSRRWNQTVSSSMTQRRTSEARSKSRRKWFRMWCFVVALY
FQLFPFFYRQFMLKRHHAPLFISLTEKQRARPTVR*
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mRNA from alignment at H-paniculata_contig4477:193..915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4477.11285.1 ID=mRNA_H-paniculata_contig4477.11285.1|Name=mRNA_H-paniculata_contig4477.11285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig4477:193..915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGTGAGAACGGTGCCCCAGGGTGGCTGGTTGACATGGGTTTTCCCGAG
AACAGTGAAGGGTACAGTGGTAGCAACTTTATTTCTCCGCTGATCCGTGG
AGGGTCGTCCAAGTTGTGAAGCCGGTATGTGTCGCGGCTGAATGTTCGTT
TTTTATCTCTCCGGGTCCCTTCTATGGTGGAGAAGCATCGTCGGAGACGA
TCCAGGAAGGCAGGCATCAATGTCTGCGTGATAGTGAAAGTTGATGTGGC
ACATCCAGCGAACAGCCGGTATCTCGGGAGAAAAGGCAATGCCAACAAGG
ACAGCAAGGATTGTTCGCCACATTTTTTGTTGTCAATTTTTTTTCCATTT
TTTCCCTCCCGTCGGTGGAACCAAACTGTGTCATCATCCATGACGCAACG
AAGGACTTCGGAGGCAAGATCGAAGTCCAGGCGAAAATGGTTTCGTATGT
GGTGTTTTGTCGTTGCGTTGTATTTCCAGTTATTTCCTTTTTTCTATCGC
CAATTCATGTTGAAACGACACCATGCCCCCCTCTTTATCAGCCTTACGGA
AAAGCAAAGAGCCCGACCGACCGTAAGGTGAAGACACTCTTGTGATTTTG
GCCATCCTTCGAGCCCTTGTCTTTGTCGTCGGCTGTACGTAGCTCGCAGG
GCTGAACAATTCTTCAGCCTCAACAGCCCCCTTCTCGCAACCCGGTGATA
GCAGATGCCACCTTTTCCATGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4477:193..915+

>mRNA_H-paniculata_contig4477.11285.1 ID=mRNA_H-paniculata_contig4477.11285.1|Name=mRNA_H-paniculata_contig4477.11285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig4477:193..915+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGAGAAGCATCGTCGGAGACGATCCAGGAAGGCAGGCATCAATGT
CTGCGTGATAGTGAAAGTTGATGTGGCACATCCAGCGAACAGCCGGTATC
TCGGGAGAAAAGGCAATGCCAACAAGGACAGCAAGGATTGTTCGCCACAT
TTTTTGTTGTCAATTTTTTTTCCATTTTTTCCCTCCCGTCGGTGGAACCA
AACTGTGTCATCATCCATGACGCAACGAAGGACTTCGGAGGCAAGATCGA
AGTCCAGGCGAAAATGGTTTCGTATGTGGTGTTTTGTCGTTGCGTTGTAT
TTCCAGTTATTTCCTTTTTTCTATCGCCAATTCATGTTGAAACGACACCA
TGCCCCCCTCTTTATCAGCCTTACGGAAAAGCAAAGAGCCCGACCGACCG
TAAGGTGAATGGTGGAGAAGCATCGTCGGAGACGATCCAGGAAGGCAGGC
ATCAATGTCTGCGTGATAGTGAAAGTTGATGTGGCACATCCAGCGAACAG
CCGGTATCTCGGGAGAAAAGGCAATGCCAACAAGGACAGCAAGGATTGTT
CGCCACATTTTTTGTTGTCAATTTTTTTTCCATTTTTTCCCTCCCGTCGG
TGGAACCAAACTGTGTCATCATCCATGACGCAACGAAGGACTTCGGAGGC
AAGATCGAAGTCCAGGCGAAAATGGTTTCGTATGTGGTGTTTTGTCGTTG
CGTTGTATTTCCAGTTATTTCCTTTTTTCTATCGCCAATTCATGTTGAAA
CGACACCATGCCCCCCTCTTTATCAGCCTTACGGAAAAGCAAAGAGCCCG
ACCGACCGTAAGGTGA
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