mRNA_H-paniculata_contig44758.11283.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44758.11283.1
Unique NamemRNA_H-paniculata_contig44758.11283.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: D8LD24_ECTSI (THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD24_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 6.410e-56
Identity = 95/124 (76.61%), Postives = 106/124 (85.48%), Query Frame = 1
Query:   10 LTKELDKRKAAYIRVVLSVAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            L KELD+RK AY+RVVL+VAPSLGMTH NP MQ EVWNML EL Y DRF+LYGAWRGH MEK+ L  KHPQ  VAE A+GAEISRLIKMLTSDNV+DMA KLGK+SH+HPL+FAEK +NQLE Y
Sbjct:  894 LKKELDRRKVAYVRVVLTVAPSLGMTHANPGMQQEVWNMLAELPYLDRFMLYGAWRGHGMEKYALGVKHPQYAVAEIAAGAEISRLIKMLTSDNVKDMARKLGKSSHSHPLLFAEKALNQLESY 1017          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A316VE13_9BASI (THO complex subunit 2 n=1 Tax=Meira miltonrushii TaxID=1280837 RepID=A0A316VE13_9BASI)

HSP 1 Score: 81.3 bits (199), Expect = 2.320e-15
Identity = 44/120 (36.67%), Postives = 69/120 (57.50%), Query Frame = 1
Query:   25 DKRKAAYIRVVLSVA-PSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
             K K A++ ++ +V  P+L MT GN  +  EVW +L +LSY +RF +YG W      K+ L  K P++ V +     E   ++K ++SDNV+     L KASHA+P +F    +NQ++ Y
Sbjct:  655 SKEKTAWLELIRNVLLPALSMTSGNSGLVSEVWVILRQLSYTERFSVYGEW------KYSL-YKRPELRVRQAEVEKEAKGILKRISSDNVKLSGRALAKASHANPTIFFTVALNQVQSY 767          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A316YN76_9BASI (THO complex subunit 2 n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YN76_9BASI)

HSP 1 Score: 77.8 bits (190), Expect = 3.800e-14
Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 1
Query:   34 KAAYIRVVLS-VAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            K A++ VV S + P+L MT GN  +  EVW ++ +L Y +R+ LYG W      K+ +  K P++ V +  +  E   ++K ++SDN++     L KASHA+P VF    +NQ++ Y
Sbjct:  657 KTAWLEVVRSFLLPALSMTSGNSGLVSEVWLIIRQLPYTERYALYGEW------KYSI-YKRPELRVRQAETEKEAKGILKRISSDNLKLSGRALAKASHANPTVFFTVALNQVQAY 766          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A4Y7JRG6_PAPSO (THO complex subunit 2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JRG6_PAPSO)

HSP 1 Score: 73.9 bits (180), Expect = 8.280e-13
Identity = 37/129 (28.68%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   22 LDKRKAAYIRVVLS---------VAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            L KR   ++RV  +         + PSL +   NPA+  E+W+++C L+YE R+ LYG W     EK    ++ P ++ A   +  +  R++K L  +N++ +   + K +HA+P+     +++Q+E Y
Sbjct:  385 LQKRSNQHLRVAKAKVEDALGTCILPSLQLIPANPAVGQEIWDLMCLLTYEARYHLYGEW-----EKEN--ERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAY 506          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: D3B7H9_POLPP (THO complex subunit 2 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B7H9_POLPP)

HSP 1 Score: 73.2 bits (178), Expect = 1.570e-12
Identity = 37/115 (32.17%), Postives = 66/115 (57.39%), Query Frame = 1
Query:   40 AYIRVVLSVAPSLG-MTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            A + V+L   PSL  M+  NPA+  EVW++L  ++Y  R+ LY  WR        +  K+  + +A+    AEI ++++ ++ +NV+ +   +GK SH HP++  E V++ +E Y
Sbjct:  496 AIVNVIL---PSLSYMSTSNPAVSFEVWSILGGMNYHVRYNLYAEWRA-------IYSKYLPLAIAKAEVTAEIRKILRRISKENVKQLGRTIGKLSHLHPMIVLEAVVSSVENY 600          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A6B2KW63_9EUKA (THO complex subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KW63_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 9.930e-12
Identity = 33/125 (26.40%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   13 TKELDKRKAAYIRVVLS--VAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            +K ++ ++ A I   +   + P+L +   NPA+  E+WN+L   SY++RF +YG W+ +        +++P   ++ T +  E+ +++  LT++NV+    ++ K +H HP V   K++ +   Y
Sbjct:  123 SKNIEGQQRADISTFIGRILLPTLSLIPANPAVATELWNVLSNFSYQERFRVYGMWQNN--------KEYPVHTISRTLASLEVKKILSRLTAENVKPKGRQIAKLTHTHPDVVFHKMLTRSRVY 239          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A3G2S7W3_9BASI (THO complex subunit 2 n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2S7W3_9BASI)

HSP 1 Score: 68.6 bits (166), Expect = 6.410e-11
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   64 VAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            V P++ + +G   +  E+W  +  L Y  R+ LYG W      KH    K P++  A+  +  E   +++ ++SDNVR     L KA+HAHP VF E V++Q++ Y
Sbjct:  521 VLPAVTLANGGAPLLYELWECIQTLPYPQRYSLYGEW------KH-RSTKRPELRYAKMQTEREARGILRRISSDNVRASGRSLAKAAHAHPTVFFEVVLHQIQSY 619          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A0A2H9TI66_9FUNG (THO complex subunit 2 n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TI66_9FUNG)

HSP 1 Score: 67.8 bits (164), Expect = 1.190e-10
Identity = 33/117 (28.21%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   34 KAAYIRVVLS-VAPSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            K  ++ V++  + PS+ +   NPA+  E+W++  +  Y  RF +YG WR        +  K+ ++ +A++   A+I R+++ LT +NVR     + K +H++P+V    ++ QL+ Y
Sbjct:  434 KEQWLTVIIHHLLPSMTLVQSNPAVSFEIWDIFKKYPYATRFAVYGNWRNE------MYAKNSEMTLAKSIVLADIRRVMRRLTRENVRQYGRLIAKLAHSNPVVVFPVILEQLQAY 544          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: A8Q6Q9_MALGO (THO complex subunit 2 n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8Q6Q9_MALGO)

HSP 1 Score: 66.6 bits (161), Expect = 3.040e-10
Identity = 33/104 (31.73%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   70 PSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            P++ +  G   +  E+W +L  L Y +R+ LYG W+    ++ G   K P++  A+  +  E   +++ ++SDNVR       KA+HAHP VF + V++Q++ Y
Sbjct:  536 PAITLADGGAPVLYELWRVLQTLPYTERYSLYGEWK----QRSG---KRPELRFAKMQTEREARGILRRISSDNVRASGRSFAKAAHAHPTVFFDVVLHQIQSY 632          
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Match: H3EEY0_PRIPA (THO complex subunit 2 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3EEY0_PRIPA)

HSP 1 Score: 65.5 bits (158), Expect = 7.690e-10
Identity = 29/104 (27.88%), Postives = 54/104 (51.92%), Query Frame = 1
Query:   70 PSLGMTHGNPAMQGEVWNMLCELSYEDRFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRDMAFKLGKASHAHPLVFAEKVINQLERY 381
            P L ++  N A+  E+W+++ +  YE R+ LYG W+  H  +      HP++ +    +      +IK L+ D V+ M   LGK +H HP    + ++ Q++ +
Sbjct:  474 PGLSLSESNVALSEEIWSLISQFPYEQRYRLYGRWKTVHTTR------HPELTIERGKTIGRTKYVIKRLSKDTVKMMGRILGKLAHTHPSFVFDYLLGQVQTF 571          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44758.11283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LD24_ECTSI6.410e-5676.61THO complex subunit 2 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A316VE13_9BASI2.320e-1536.67THO complex subunit 2 n=1 Tax=Meira miltonrushii T... [more]
A0A316YN76_9BASI3.800e-1435.90THO complex subunit 2 n=1 Tax=Acaromyces ingoldii ... [more]
A0A4Y7JRG6_PAPSO8.280e-1328.68THO complex subunit 2 n=1 Tax=Papaver somniferum T... [more]
D3B7H9_POLPP1.570e-1232.17THO complex subunit 2 n=1 Tax=Polysphondylium pall... [more]
A0A6B2KW63_9EUKA9.930e-1226.40THO complex subunit 2 n=1 Tax=Arcella intermedia T... [more]
A0A3G2S7W3_9BASI6.410e-1133.96THO complex subunit 2 n=2 Tax=Malassezia restricta... [more]
A0A2H9TI66_9FUNG1.190e-1028.21THO complex subunit 2 n=1 Tax=Paramicrosporidium s... [more]
A8Q6Q9_MALGO3.040e-1031.73THO complex subunit 2 n=1 Tax=Malassezia globosa (... [more]
H3EEY0_PRIPA7.690e-1027.88THO complex subunit 2 n=2 Tax=Pristionchus pacific... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44758contigH-paniculata_contig44758:474..1228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.4
Seed ortholog evalue7.9e-48
Seed eggNOG ortholog2880.D8LD24
Preferred nameZC3H13
KEGG koko:K12837,ko:K12879
KEGG Pathwayko03013,ko03040,map03013,map03040
KEGG ModuleM00405,M00406
Hectar predicted targeting categoryother localisation
GOsGO:0001510,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016071,GO:0016556,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034641,GO:0034708,GO:0036396,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045293,GO:0046483,GO:0050789,GO:0050793,GO:0051239,GO:0065007,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:1901360,GO:1902494,GO:1990234,GO:2000036
EggNOG free text desc.mRNA transport
EggNOG OGsKOG1874@1,KOG1874@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930345.9241846-CDS-H-paniculata_contig44758:473..6171622930345.9241846-CDS-H-paniculata_contig44758:473..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44758 474..617 -
1691481250.941431-CDS-H-paniculata_contig44758:473..6171691481250.941431-CDS-H-paniculata_contig44758:473..617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44758 474..617 -
1622930345.944036-CDS-H-paniculata_contig44758:991..12281622930345.944036-CDS-H-paniculata_contig44758:991..1228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44758 992..1228 -
1691481250.953239-CDS-H-paniculata_contig44758:991..12281691481250.953239-CDS-H-paniculata_contig44758:991..1228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44758 992..1228 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44758.11283.1prot_H-paniculata_contig44758.11283.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44758 474..1228 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44758.11283.1

>prot_H-paniculata_contig44758.11283.1 ID=prot_H-paniculata_contig44758.11283.1|Name=mRNA_H-paniculata_contig44758.11283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
LTTLTKELDKRKAAYIRVVLSVAPSLGMTHGNPAMQGEVWNMLCELSYED
RFLLYGAWRGHHMEKHGLRQKHPQIVVAETASGAEISRLIKMLTSDNVRD
MAFKLGKASHAHPLVFAEKVINQLERY
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mRNA from alignment at H-paniculata_contig44758:474..1228-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44758.11283.1 ID=mRNA_H-paniculata_contig44758.11283.1|Name=mRNA_H-paniculata_contig44758.11283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=755bp|location=Sequence derived from alignment at H-paniculata_contig44758:474..1228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACCACCCTGACGAAGGAATTAGACAAGAGGAAAGCGGCGTACATTCG AGTGGTGTTGTCTGTGGCCCCCTCCCTGGGCATGACTCACGGTAATCCAG CGATGCAGGGCGAGGTATGGAACATGCTGTGTGAGCTGTCGTACGAAGAC CGGTTCTTGCTGTATGGGGCGTGGAGGGGTCACCACATGGAGAAGCATGG CTTGAGGCAGAAACACCCGCAGATCGTTGTCGCGGAGGTGAGGTTCCAAG TCTGAGCTGTTCACGGCTGTAATGATTTCCTCGCCTAGAAAATCGTATGC TGAAAGAATTTTCTCGAAGTATTTTTTCACGAGAGACGATAGAACGGTAC GAAATCCCGTCCCGTCCTGTCCTATTCTATTCTATCTAGTTTTGGAAAAT GGGGTGCTGTCGCAGCAATAAATTTTTCGCGTCGTGTCAAGAAATTACCG TTCCGTAATACAACGAAGAACCCTTGAATTTTCGCGGAATAATCCGGATA CAATTGACGCCCCCTCTCGTAGTAGGAGGATTCACTTGACTCAGGTACCG TTCCTCAAAATGTTGCCTTGCATCGCTACACCGTTACACCGTTACACATG CAATTCGACAGACCGCGTCGGGTGCGGAGATTTCGCGTCTGATCAAGATG CTAACCTCCGACAACGTGCGGGACATGGCGTTCAAGCTGGGGAAGGCATC TCACGCGCATCCTCTAGTCTTCGCTGAAAAGGTCATCAACCAGCTCGAAA GGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig44758:474..1228-

>mRNA_H-paniculata_contig44758.11283.1 ID=mRNA_H-paniculata_contig44758.11283.1|Name=mRNA_H-paniculata_contig44758.11283.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig44758:474..1228- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACCACCCTGACGAAGGAATTAGACAAGAGGAAAGCGGCGTACATTCG
AGTGGTGTTGTCTGTGGCCCCCTCCCTGGGCATGACTCACGGTAATCCAG
CGATGCAGGGCGAGGTATGGAACATGCTGTGTGAGCTGTCGTACGAAGAC
CGGTTCTTGCTGTATGGGGCGTGGAGGGGTCACCACATGGAGAAGCATGG
CTTGAGGCAGAAACACCCGCAGATCGTTGTCGCGGAGCTCACCACCCTGA
CGAAGGAATTAGACAAGAGGAAAGCGGCGTACATTCGAGTGGTGTTGTCT
GTGGCCCCCTCCCTGGGCATGACTCACGGTAATCCAGCGATGCAGGGCGA
GGTATGGAACATGCTGTGTGAGCTGTCGTACGAAGACCGGTTCTTGCTGT
ATGGGGCGTGGAGGGGTCACCACATGGAGAAGCATGGCTTGAGGCAGAAA
CACCCGCAGATCGTTGTCGCGGAGACCGCGTCGGGTGCGGAGATTTCGCG
TCTGATCAAGATGCTAACCTCCGACAACGTGCGGGACATGGCGTTCAAGC
TGGGGAAGGCATCTCACGCGCATCCTCTAGTCTTCGCTGAAAAGGTCATC
AACCAGCTCGAAAGGTATACCGCGTCGGGTGCGGAGATTTCGCGTCTGAT
CAAGATGCTAACCTCCGACAACGTGCGGGACATGGCGTTCAAGCTGGGGA
AGGCATCTCACGCGCATCCTCTAGTCTTCGCTGAAAAGGTCATCAACCAG
CTCGAAAGGTAT
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