mRNA_H-paniculata_contig44731.11278.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44731.11278.1
Unique NamemRNA_H-paniculata_contig44731.11278.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 5.270e-54
Identity = 110/307 (35.83%), Postives = 183/307 (59.61%), Query Frame = 3
Query:  486 QAANGRVQQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            Q  + + ++  +   +TD+ EV  ILG+ V  + + GTL +SQ  +V ++LERF +  ANP  TPG   + +T   ++ Q+L     K YQ+M GS+++L QCTRFD+S++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTT  +FF+A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+  AL +A N+ +S R T++A++   +++ + R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:   68 QLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQR-TNVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 372          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 7.130e-54
Identity = 104/288 (36.11%), Postives = 173/288 (60.07%), Query Frame = 3
Query:  531 ITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKI 1376
            +TD+ EV  ++G+EV  + + GTL +SQ  +   +L+R+ +  ANP  TPG   + +T   ++ QLL     + +Q + GSL++L QCTR+D+S++V Q  R  + P Q H+ A K + RYL+G PD+PI Y + + +L  ++D+S+       RSTT  +FF+  GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+G +   S  + SD+  AL +A+N+ +SSR+ HIA++F  L++  + H+  + H PS   LADI TK   +  FA +   I
Sbjct:    6 MTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQD-QLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 1.110e-53
Identity = 110/307 (35.83%), Postives = 185/307 (60.26%), Query Frame = 3
Query:  486 QAANGRVQQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            Q  + + ++  +   +TD+ EV  ILG++V  + + GTL +SQ  +V ++LERF +  ANP  TPG   + +T   ++ Q+L     K YQ+M GS+++L QCTRFD+S++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTT  +FF+A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+  AL +A N+ +S R+ H+A+++  +++ + R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:  395 QLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.290e-53
Identity = 104/193 (53.89%), Postives = 127/193 (65.80%), Query Frame = 1
Query:    1 WMEAMRKELNSFDEHQVADLIPASSIPSDHAVIGTRWVFKVKADGKFKTRLVVQGWSQKHGVDC--------GIG------------------------FLNGKLKESVFCRQAPGFKKTHPTTGQPYVMSLKKSRYGLRQSPNVWNHIIDNELRSMGSTPTVSDPCVYSKRINDTYIMLSLFVDDILVTGPT 483
            W +AM KEL S D+H VADLIP SS+P+  +VIGTRWV++VK DG+FK R+VVQGW+Q+HG+DC         IG                        FLNGKL E V+  QAPGF+K   +TG+P V  LKKS YGLRQSP+VWN  ID +LR  G TPT SDPCVY+K   ++YIML+LFVDDIL+T  T
Sbjct:  659 WEQAMLKELASLDDHDVADLIPVSSVPAGCSVIGTRWVYRVKTDGRFKARVVVQGWAQQHGIDCFTTFAPVCKIGSQRLLLAIAAAQGWPVIAMDVQTAFLNGKLSEDVYTYQAPGFEKIESSTGKPLVWKLKKSLYGLRQSPSVWNLTIDKDLRGKGFTPTASDPCVYTKGSGNSYIMLTLFVDDILLTVAT 851          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 1.210e-52
Identity = 108/307 (35.18%), Postives = 183/307 (59.61%), Query Frame = 3
Query:  486 QAANGRVQQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            Q  + + ++  +   +TD+ EV  ILG++V  + + GTL +SQ  +V + LERF +  ANP  T G   + +T   ++ Q+L     K YQ+M GS+++L QCT+FD+S++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTT  +FF+A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+  AL +A N+ +S R+ H+A+++  +++ + R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:  187 QLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.480e-52
Identity = 109/309 (35.28%), Postives = 179/309 (57.93%), Query Frame = 3
Query:  531 ITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPD-----------------VPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            +TD+ EV  ILG++V  + + GTL +SQ  +V ++LERF +  ANP  TPG   + +T   ++ Q+L     K YQ+M GS+++L QCTRFD+S++ +Q ++  S P Q ++ A K + RYL+G+P                  +PI Y R + +L  ++D+S+       RSTT  +FF+A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+  AL +A N+ +S R+ H+A+++  +++ + R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:   25 MTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 332          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.980e-52
Identity = 109/307 (35.50%), Postives = 184/307 (59.93%), Query Frame = 3
Query:  486 QAANGRVQQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            Q  + + ++  +   +TD+ EV  ILG++V  + + GTL +SQ  +V ++LERF +  ANP  TPG   + +T   ++ Q+L     K YQ+M GS+++L QCTRFD+S++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTT  +FF+A GL+ + ++ Q +TA ST EAE+ AL+  A++ +Y+     EL  +   S  + SD+  AL +A N+ +S R+ H+ +++  +++ + R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:  551 QLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.540e-51
Identity = 113/301 (37.54%), Postives = 177/301 (58.80%), Query Frame = 3
Query:  507 QQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYC-------TRSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            +Q  +   +TD     L+LGME+  ++  G + +SQHK+V+++L+++ +    P  TPG   +      EN+  L     K YQ +VGSL+FLT  TR++I ++V+   R M+ PT QH+V  KR+ RYL+G PD+P+ + R +  L  Y DAS+         RS+T  +F +A G+V  +S LQK+TA S+  AE+IA+AT A++ IYL G+  ELG    +  + SD+  A+  A NS +  RS  I+ ++  L+  + +   ++  V S +QLADILTK  ERV F +LR+ +   G
Sbjct:  406 KQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPE-IEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.450e-50
Identity = 106/305 (34.75%), Postives = 181/305 (59.34%), Query Frame = 3
Query:  480 NGQAANGRVQQADE*IYITDLEEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKI 1376
            N +  + + ++  +   +TD+ EV  ++G+EV  + + GTL +SQ  +   +L+R+ +  ANP  TPG   + +T   ++ QLL     + +QA+ GSL++L QCTR+D+S++V Q  R  + P Q H+ A K + RYL+G PD+PI Y + + +L  ++D+S+       RSTT  +FF+  GL+ + ++ Q + A +T EAEL AL+  A++ +Y+     E+G +   S  + SD+  AL +A+N+ +SSR+ HIA++F  L++  + H+  + H PS   LADI TK   +  FA +   I
Sbjct:  426 NKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Match: A0A6H5L5K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K4_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 4.000e-50
Identity = 103/288 (35.76%), Postives = 172/288 (59.72%), Query Frame = 3
Query:  543 EEVSLILGMEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSENSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHLVAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCT-----RSTTETMFFVANGLVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQLADILTKLCERVVFAQLRSKILTFG 1388
            +  + ILG++V  + + GTL +SQ  +V ++LERF +  ANP  TPG   + +T   ++ Q+L     K Y++M GS+++L QCTRFD+S++ +Q ++  S P Q ++ A K + RYL+G+P +PI Y R + +L  ++D+S+       RSTT   FF+A GL+ + ++ Q  TA ST EAE+ AL+  A++ +Y+     EL  +   S  + +D+  AL +A N+ +S R+ H+A+++  +++   R Q  + H PS  QLADI TK   +  FA +  +I  F 
Sbjct:   46 QPAAXILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYRSMTGSILYLAQCTRFDLSYAALQNSKACSNPAQVNMTAAKHVLRYLRGNPFLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYPFFLAGGLISYGAKTQTRTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINNDSTGALTVAGNAMHSQRTKHVALRYFFIRELALRGQITLHHRPSEHQLADIATKNLPKHRFASIIQQINDFS 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44731.11278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUJ3_9PHAE5.270e-5435.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KC04_9PHAE7.130e-5436.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF89_9PHAE1.110e-5335.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAG6_9PHAE1.290e-5353.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KQD0_9PHAE1.210e-5235.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE1.480e-5235.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.980e-5235.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J897_9PHAE1.540e-5137.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE1.450e-5034.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5K4_9PHAE4.000e-5035.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44731contigH-paniculata_contig44731:27..1516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score150.2
Seed ortholog evalue1.4e-33
Seed eggNOG ortholog4538.ORGLA06G0273300.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3INKC@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size1394
Cds size828
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44731.11278.1prot_H-paniculata_contig44731.11278.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44731 689..1516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930345.2473152-UTR-H-paniculata_contig44731:26..2221622930345.2473152-UTR-H-paniculata_contig44731:26..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44731 27..222 +
1691481250.694163-UTR-H-paniculata_contig44731:26..2221691481250.694163-UTR-H-paniculata_contig44731:26..222Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44731 27..222 +
1622930345.276869-UTR-H-paniculata_contig44731:318..6881622930345.276869-UTR-H-paniculata_contig44731:318..688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44731 319..688 +
1691481250.708048-UTR-H-paniculata_contig44731:318..6881691481250.708048-UTR-H-paniculata_contig44731:318..688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44731 319..688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930345.293227-CDS-H-paniculata_contig44731:688..15161622930345.293227-CDS-H-paniculata_contig44731:688..1516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44731 689..1516 +
1691481250.718827-CDS-H-paniculata_contig44731:688..15161691481250.718827-CDS-H-paniculata_contig44731:688..1516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44731 689..1516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44731.11278.1

>prot_H-paniculata_contig44731.11278.1 ID=prot_H-paniculata_contig44731.11278.1|Name=mRNA_H-paniculata_contig44731.11278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=276bp
MEVLCNKQTGTLQLSQHKHVLSVLERFNVSSANPTKTPGVKTDSTTTTSE
NSQLLDAAATKEYQAMVGSLIFLTQCTRFDISFSVIQAARYMSAPTQQHL
VAVKRIFRYLQGHPDVPITYSRCEPKLLGYSDASYCTRSTTETMFFVANG
LVHFSSRLQKITATSTTEAELIALATCAKQGIYLLGICRELGLQLTSCEV
RSDNRVALQLAANSNYSSRSTHIAVKFAALKDWIRRHQFIIDHVPSTDQL
ADILTKLCERVVFAQLRSKILTFGK*
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mRNA from alignment at H-paniculata_contig44731:27..1516+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44731.11278.1 ID=mRNA_H-paniculata_contig44731.11278.1|Name=mRNA_H-paniculata_contig44731.11278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1490bp|location=Sequence derived from alignment at H-paniculata_contig44731:27..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATGGAAGCCATGCGGAAGGAACTCAACAGCTTCGACGAACATCAAGT CGCCGATTTAATCCCAGCTAGCTCCATCCCATCCGACCACGCAGTTATTG GCACGCGCTGGGTATTTAAAGTAAAAGCAGACGGAAAATTCAAGACTCGG CTTGTGGTACAAGGCTGGTCACAAAAACATGGGGTTGACTGCGGGAGTAC CTTTGCACCTGTATGTAGACTGGAGAGCAAGCGACTACTGCTAGCACTAG CGACGGCAAAGGATTGAACCCTATTTGCACTAGATGTTCAAGTTGGTTTT CTAAACGGCAAGCTGAAGGAGAGCGTCTTTTGCAGACAAGCACCTGGTTT TAAGAAGACTCACCCTACTACTGGACAGCCCTACGTGATGAGTTTGAAGA AATCGAGATATGGGTTGCGCCAAAGCCCAAATGTGTGGAATCATATAATC GACAACGAGCTGAGGAGCATGGGTTCTACACCAACTGTCTCGGATCCCTG TGTCTACAGTAAAAGAATCAACGACACCTATATTATGCTTAGTCTTTTCG TCGACGATATACTAGTGACAGGACCAACGGACAGGCTGCTAATGGACGTG TGCAGCAAGCTGACGAATAAATTTACATCACGGACCTTGAAGAAGTATCG CTTATACTTGGGATGGAGGTACTATGCAACAAACAGACCGGCACTCTACA GCTATCACAGCACAAGCATGTACTATCTGTTTTGGAGAGGTTCAACGTGT CATCAGCAAATCCCACGAAGACACCTGGAGTTAAAACGGACTCCACTACT ACTACTAGCGAAAACAGTCAACTACTGGATGCAGCAGCTACAAAGGAGTA TCAAGCCATGGTAGGGAGCCTCATTTTCTTGACCCAGTGTACAAGATTCG ACATTTCCTTCAGCGTCATCCAAGCGGCACGCTACATGAGCGCACCAACT CAACAGCATCTAGTCGCAGTAAAGCGGATTTTTCGGTATTTACAGGGTCA CCCAGATGTTCCCATCACGTACAGCAGATGTGAGCCGAAACTACTCGGCT ATTCTGATGCATCATACTGCACACGGTCTACAACAGAGACTATGTTCTTC GTTGCCAACGGATTGGTACACTTCTCATCTCGACTACAGAAGATAACGGC TACAAGCACAACTGAGGCAGAACTCATCGCGCTGGCTACATGCGCAAAAC AAGGCATTTACCTCCTGGGTATCTGCAGGGAGCTGGGTCTTCAACTGACT AGCTGCGAGGTTCGAAGTGACAATCGGGTAGCTCTTCAACTCGCAGCCAA CAGCAATTACTCAAGCCGCAGCACACACATCGCCGTCAAGTTCGCAGCAC TGAAAGACTGGATCAGGAGACATCAGTTTATCATCGACCATGTGCCAAGT ACTGATCAGCTAGCTGACATTCTCACCAAACTCTGCGAAAGAGTGGTGTT CGCCCAACTACGGAGCAAAATATTGACTTTTGGGAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig44731:27..1516+

>mRNA_H-paniculata_contig44731.11278.1 ID=mRNA_H-paniculata_contig44731.11278.1|Name=mRNA_H-paniculata_contig44731.11278.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1656bp|location=Sequence derived from alignment at H-paniculata_contig44731:27..1516+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTACTATGCAACAAACAGACCGGCACTCTACAGCTATCACAGCA
CAAGCATGTACTATCTGTTTTGGAGAGGTTCAACGTGTCATCAGCAAATC
CCACGAAGACACCTGGAGTTAAAACGGACTCCACTACTACTACTAGCGAA
AACAGTCAACTACTGGATGCAGCAGCTACAAAGGAGTATCAAGCCATGGT
AGGGAGCCTCATTTTCTTGACCCAGTGTACAAGATTCGACATTTCCTTCA
GCGTCATCCAAGCGGCACGCTACATGAGCGCACCAACTCAACAGCATCTA
GTCGCAGTAAAGCGGATTTTTCGGTATTTACAGGGTCACCCAGATGTTCC
CATCACGTACAGCAGATGTGAGCCGAAACTACTCGGCTATTCTGATGCAT
CATACTGCACACGGTCTACAACAGAGACTATGTTCTTCGTTGCCAACGGA
TTGGTACACTTCTCATCTCGACTACAGAAGATAACGGCTACAAGCACAAC
TGAGGCAGAACTCATCGCGCTGGCTACATGCGCAAAACAAGGCATTTACC
TCCTGGGTATCTGCAGGGAGCTGGGTCTTCAACTGACTAGCTGCGAGGTT
CGAAGTGACAATCGGGTAGCTCTTCAACTCGCAGCCAACAGCAATTACTC
AAGCCGCAGCACACACATCGCCGTCAAGTTCGCAGCACTGAAAGACTGGA
TCAGGAGACATCAGTTTATCATCGACCATGTGCCAAGTACTGATCAGCTA
GCTGACATTCTCACCAAACTCTGCGAAAGAGTGGTGTTCGCCCAACTACG
GAGCAAAATATTGACTTTTGGGAAATGAATGGAGGTACTATGCAACAAAC
AGACCGGCACTCTACAGCTATCACAGCACAAGCATGTACTATCTGTTTTG
GAGAGGTTCAACGTGTCATCAGCAAATCCCACGAAGACACCTGGAGTTAA
AACGGACTCCACTACTACTACTAGCGAAAACAGTCAACTACTGGATGCAG
CAGCTACAAAGGAGTATCAAGCCATGGTAGGGAGCCTCATTTTCTTGACC
CAGTGTACAAGATTCGACATTTCCTTCAGCGTCATCCAAGCGGCACGCTA
CATGAGCGCACCAACTCAACAGCATCTAGTCGCAGTAAAGCGGATTTTTC
GGTATTTACAGGGTCACCCAGATGTTCCCATCACGTACAGCAGATGTGAG
CCGAAACTACTCGGCTATTCTGATGCATCATACTGCACACGGTCTACAAC
AGAGACTATGTTCTTCGTTGCCAACGGATTGGTACACTTCTCATCTCGAC
TACAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCGCTG
GCTACATGCGCAAAACAAGGCATTTACCTCCTGGGTATCTGCAGGGAGCT
GGGTCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAATCGGGTAGCTC
TTCAACTCGCAGCCAACAGCAATTACTCAAGCCGCAGCACACACATCGCC
GTCAAGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAGTTTATCAT
CGACCATGTGCCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACTCT
GCGAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTGGG
AAATGA
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