prot_H-paniculata_contig44709.11274.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44709.11274.1
Unique Nameprot_H-paniculata_contig44709.11274.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length115
Homology
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A8F0F793_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F793_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 1.110e-66
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNN---EKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK VIQFIKG+DEITIPIVNITRSRDGSTGTATF+F+YPSIF KMV+N   EKEITGMFL+D+EGTLSTRDI AKFIQGKPKTIQATYIIKSSE+WDRFMRFMERYAEENQLTF RA
Sbjct:    1 MKAVIQFIKGIDEITIPIVNITRSRDGSTGTATFIFEYPSIFYKMVSNVSDEKEITGMFLIDQEGTLSTRDINAKFIQGKPKTIQATYIIKSSESWDRFMRFMERYAEENQLTFIRA 117          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A2I4Q2L4_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2L4_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 4.430e-61
Identity = 91/114 (79.82%), Postives = 105/114 (92.11%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK +IQFIKG+DE+TIPIVNITRSRDGSTGTATF+F+ P+IF  ++  E EITGMFL+D+EGTLSTRDITAKFIQGKPKTIQATYIIK+SE+WDRFMRFMERYA EN+LTF R+
Sbjct:    1 MKPIIQFIKGIDEVTIPIVNITRSRDGSTGTATFIFEDPNIFYNILGTENEITGMFLIDDEGTLSTRDITAKFIQGKPKTIQATYIIKNSESWDRFMRFMERYATENKLTFIRS 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A8F0FAT7_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT7_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 9.600e-56
Identity = 86/114 (75.44%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK VIQFIKG++E TIPI+NITRS DGSTGTATF F+  SIF  +V+ E EITGMFL+D+EGTLSTRDI AKFIQGKPKT+QA YI+K++EAWDRFMRFMERY++EN LTF RA
Sbjct:    1 MKAVIQFIKGIEETTIPIINITRSTDGSTGTATFTFEDASIFYTIVSPESEITGMFLIDKEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSDENDLTFIRA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A141BSJ6_9PHAE (Photosystem II reaction center Psb28 protein n=15 Tax=Fucales TaxID=3009 RepID=A0A141BSJ6_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 7.350e-54
Identity = 81/114 (71.05%), Postives = 100/114 (87.72%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK VIQFIKG++E TIPI+NITRS DG+TGTATF+F+  S+F   ++++ EITGMFL+D EGTLSTRDI AKFIQGKPKT+QA YI+K++EAWDRFMRFMERY+E+N LTF +A
Sbjct:    1 MKAVIQFIKGIEETTIPIINITRSPDGTTGTATFIFEDASLFYAGISSQSEITGMFLIDNEGTLSTRDINAKFIQGKPKTLQAIYIMKNAEAWDRFMRFMERYSEQNNLTFIKA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A8E5XRQ3_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRQ3_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.310e-53
Identity = 84/114 (73.68%), Postives = 96/114 (84.21%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK  IQFIKG++E TIP++NITRS DG+TGTATF+F+ P+I    V    EITGMFLVD+EG LST+DI AKFIQGKP TIQA YIIKS+EAWDRFMRFMERY+EEN LTFTRA
Sbjct:    1 MKAAIQFIKGINENTIPLINITRSIDGTTGTATFIFENPNILYNNVGENSEITGMFLVDKEGILSTKDINAKFIQGKPTTIQAIYIIKSAEAWDRFMRFMERYSEENDLTFTRA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: D1J711_ECTSI (Photosystem II reaction center Psb28 protein n=34 Tax=Phaeophyceae TaxID=2870 RepID=D1J711_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.370e-52
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK +IQFIKGV+E TIP +NITRS DG+TGTATF+F+  S+F   +N E EI+GMFL+D+EG LST+D+ AKFI+GKPKT+QA YI+K++EAWDRFMRFMERY++EN LTF RA
Sbjct:    1 MKAIIQFIKGVEETTIPTINITRSTDGTTGTATFIFEDASLFYTGINPESEISGMFLIDKEGVLSTKDLNAKFIEGKPKTLQALYIMKNAEAWDRFMRFMERYSDENNLTFIRA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A1I9LVI6_9PHAE (Photosystem II reaction center Psb28 protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVI6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.310e-50
Identity = 71/114 (62.28%), Postives = 97/114 (85.09%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            MK +IQFI+G  E T+P +NITRS+DGSTGTATF+F+ PS+F+  +N E +++GM+L+D+EG LST+D+TA FI GKPKT++A YI+K+++AWDRFMRFME+Y +EN LTF RA
Sbjct:    1 MKAIIQFIEGAQETTVPTINITRSKDGSTGTATFIFEDPSLFSTTINPESQVSGMYLIDDEGVLSTKDLTANFIAGKPKTLKAIYIMKNAQAWDRFMRFMEKYLDENNLTFIRA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: PSB28_TRICV (Photosystem II reaction center Psb28 protein n=40 Tax=Sar TaxID=2698737 RepID=PSB28_TRICV)

HSP 1 Score: 153 bits (386), Expect = 5.600e-46
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 0
Query:    1 MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            M+  IQFIKG+DE  +P V +TRSRDGSTGTATF F  P+I +K    E EITGM+L+D+EGTL TRD+ A+FI GKP+ I++ YI+KS EAWDRFMRFMERY E N L FT+A
Sbjct:    1 MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQEGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A1G4NRJ3_9FLOR (Photosystem II reaction center Psb28 protein n=10 Tax=Liagoraceae TaxID=31484 RepID=A0A1G4NRJ3_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 5.600e-46
Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 0
Query:    4 VIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            VIQFIKG+DE  +P V +TRSRDGSTGTATF F  P+I N  +  + EITGM+LVDEEG L TRD+ AKFI GKP+ I++ YIIK  E WDRFMRFMERYA EN L+FT+A
Sbjct:    3 VIQFIKGIDETVVPDVRLTRSRDGSTGTATFRFTNPTILNVGMEQKGEITGMYLVDEEGELITRDVNAKFINGKPEAIESVYIIKDPENWDRFMRFMERYANENSLSFTKA 113          
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Match: A0A1C9CHD5_PALPL (Photosystem II reaction center Psb28 protein n=6 Tax=Nemaliophycidae TaxID=2045258 RepID=A0A1C9CHD5_PALPL)

HSP 1 Score: 153 bits (386), Expect = 5.770e-46
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 0
Query:    4 VIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEKEITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFMERYAEENQLTFTRA 114
            VIQFIKG+DE  +P V +TRSRDGSTGTATF F  P I N  + N+ +ITGM+L+DEEG L TRD+ AKFI GKPK I++ Y+IK +  WDRFMRFMERYA EN L+FT+A
Sbjct:    3 VIQFIKGIDETVVPDVKLTRSRDGSTGTATFRFTNPVILNASMENQGDITGMYLMDEEGELITRDVNAKFINGKPKAIESIYVIKDASNWDRFMRFMERYANENSLSFTKA 113          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44709.11274.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F793_9PHAE1.110e-6688.03Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A2I4Q2L4_9PHAE4.430e-6179.82Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A8F0FAT7_9PHAE9.600e-5675.44Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A141BSJ6_9PHAE7.350e-5471.05Photosystem II reaction center Psb28 protein n=15 ... [more]
A0A8E5XRQ3_9PHAE1.310e-5373.68Photosystem II reaction center Psb28 protein n=1 T... [more]
D1J711_ECTSI4.370e-5268.42Photosystem II reaction center Psb28 protein n=34 ... [more]
A0A1I9LVI6_9PHAE4.310e-5062.28Photosystem II reaction center Psb28 protein n=1 T... [more]
PSB28_TRICV5.600e-4664.04Photosystem II reaction center Psb28 protein n=40 ... [more]
A0A1G4NRJ3_9FLOR5.600e-4666.67Photosystem II reaction center Psb28 protein n=10 ... [more]
A0A1C9CHD5_PALPL5.770e-4664.86Photosystem II reaction center Psb28 protein n=6 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038676Photosystem II Psb28, class 1 superfamilyGENE3D2.40.30.220coord: 2..114
e-value: 1.3E-43
score: 149.9
IPR005610Photosystem II Psb28, class 1PFAMPF03912Psb28coord: 5..111
e-value: 3.4E-42
score: 143.0
IPR005610Photosystem II Psb28, class 1TIGRFAMTIGR03047TIGR03047coord: 5..112
e-value: 4.6E-44
score: 147.1
IPR005610Photosystem II Psb28, class 1PANTHERPTHR34963FAMILY NOT NAMEDcoord: 2..113
IPR005610Photosystem II Psb28, class 1HAMAPMF_01370PSII_Psb28coord: 2..112
score: 29.762
NoneNo IPR availablePANTHERPTHR34963:SF2PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTICcoord: 2..113
NoneNo IPR availablePRODOMPD012692coord: 5..104
e-value: 5.0E-35
score: 364.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44709contigH-paniculata_contig44709:1236..1580 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44709.11274.1mRNA_H-paniculata_contig44709.11274.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44709 1236..1580 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44709.11274.1 ID=prot_H-paniculata_contig44709.11274.1|Name=mRNA_H-paniculata_contig44709.11274.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MKTVIQFIKGVDEITIPIVNITRSRDGSTGTATFLFDYPSIFNKMVNNEK
EITGMFLVDEEGTLSTRDITAKFIQGKPKTIQATYIIKSSEAWDRFMRFM
ERYAEENQLTFTRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038676Psb28_c1_sf
IPR005610PSII_Psb28_class-1