mRNA_H-paniculata_contig4470.11271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4470.11271.1
Unique NamemRNA_H-paniculata_contig4470.11271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: D7FM89_ECTSI (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM89_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.780e-22
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVR 147
            VIGDSTNDASQLMKREGVRSVPSFHFWK GKKV+ VNGANE+AL  T+R
Sbjct:   72 VIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLR 120
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A6H5K2L8_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.920e-22
Identity = 42/49 (85.71%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVR 147
            VIGDSTNDASQLMKREGVRSVPSFHFWK GKKV+ VNGANE+AL  T+R
Sbjct:  111 VIGDSTNDASQLMKREGVRSVPSFHFWKDGKKVEKVNGANEEALEQTLR 159
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A835ZHZ2_9STRA (Flagellar outer arm dynein 14 kDa light chain LC5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHZ2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.230e-18
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVR 147
            VIGDS+  A++LMKREGVRSVPSFHFWK GKKVD VNGAN +AL  T+R
Sbjct:  100 VIGDSSQAATKLMKREGVRSVPSFHFWKDGKKVDQVNGANSEALETTIR 148
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A6U3T919_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3T919_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-17
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTV 144
            VIGDS+ DAS+LMKREGVRSVPSFHFWK G+K+D +NGAN DAL   +
Sbjct:  100 VIGDSSPDASKLMKREGVRSVPSFHFWKNGEKMDIINGANVDALQSAI 147
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: F0Y374_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y374_AURAN)

HSP 1 Score: 75.9 bits (185), Expect = 8.200e-17
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVR 147
            VIGDS+ +AS LMKREGVR+VPSFHFWK G+KVD VNGAN +A+   V+
Sbjct:   38 VIGDSSAEASSLMKREGVRAVPSFHFWKNGEKVDVVNGANIEAVTSNVQ 86
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A7R9U0I5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0I5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.470e-16
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDAL 132
            VIGDS+ +A++LMKREGVRSVP+FHFWKGG+KVD V+GAN DAL
Sbjct:   99 VIGDSSAEATKLMKREGVRSVPAFHFWKGGEKVDIVSGANPDAL 142
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A4D9DEX6_9STRA (Thioredoxin domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEX6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.810e-16
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTV 144
            VIGDST +A QL+KREGVRSVP+FHFWK GK+VDS++GA+ + L D +
Sbjct:   97 VIGDSTPEAGQLLKREGVRSVPAFHFWKNGKRVDSISGADPERLEDVI 144
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A7S3JVJ8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVJ8_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.110e-16
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVRSLV 156
            V GD++ DAS LMKREGVR+VPSFHFWK G++VD VNGAN DA+ ++++  +
Sbjct:   94 VTGDASADASALMKREGVRAVPSFHFWKNGERVDVVNGANIDAVTNSLQKFI 145
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A7S0CE53_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE53_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 8.640e-16
Identity = 33/44 (75.00%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDAL 132
            VIGD++ D S+LMKREGVRSVPSFHFW  GKK+D VNGAN DA+
Sbjct:  134 VIGDASQDTSKLMKREGVRSVPSFHFWVDGKKIDVVNGANADAI 177
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BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Match: A0A7S2KBD8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KBD8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.360e-15
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVR 147
            VIGD+T DAS+LMKREGVRSVPSFH++K G+KVD VNGAN +A+   ++
Sbjct:   92 VIGDATPDASKLMKREGVRSVPSFHYFKNGEKVDVVNGANAEAIEGAIK 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4470.11271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM89_ECTSI1.780e-2285.71Flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
A0A6H5K2L8_9PHAE4.920e-2285.71Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZHZ2_9STRA2.230e-1875.51Flagellar outer arm dynein 14 kDa light chain LC5 ... [more]
A0A6U3T919_9STRA1.800e-1772.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0Y374_AURAN8.200e-1769.39Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7R9U0I5_9STRA1.470e-1677.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9DEX6_9STRA3.810e-1666.67Thioredoxin domain-containing protein n=3 Tax=Mono... [more]
A0A7S3JVJ8_9STRA7.110e-1661.54Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0CE53_9STRA8.640e-1675.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2KBD8_9STRA1.360e-1567.35Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4470contigH-paniculata_contig4470:3066..3995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue4.3e-16
Seed eggNOG ortholog2880.D7FM89
Preferred nameTrx-f
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000224,GO:0001558,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008361,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010721,GO:0010769,GO:0010771,GO:0010975,GO:0010977,GO:0015035,GO:0015036,GO:0016043,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019725,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0030308,GO:0030433,GO:0031344,GO:0031345,GO:0032501,GO:0032502,GO:0032535,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0040008,GO:0042221,GO:0042592,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045926,GO:0047134,GO:0048519,GO:0048523,GO:0048638,GO:0048640,GO:0048670,GO:0048671,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050770,GO:0050771,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051716,GO:0051960,GO:0051961,GO:0055114,GO:0060284,GO:0061387,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090066,GO:0120035,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:2000026
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
Ec32 ortholog descriptionflagellar outer arm dynein 14 kDa light chain LC5
Ec32 orthologEc-16_004650.1
EC3.5.1.52
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Exons2
Model size159
Cds size159
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930344.555181-CDS-H-paniculata_contig4470:3065..31611622930344.555181-CDS-H-paniculata_contig4470:3065..3161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4470 3066..3161 +
1691481250.4541166-CDS-H-paniculata_contig4470:3065..31611691481250.4541166-CDS-H-paniculata_contig4470:3065..3161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4470 3066..3161 +
1622930344.5679238-CDS-H-paniculata_contig4470:3932..39951622930344.5679238-CDS-H-paniculata_contig4470:3932..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4470 3933..3995 +
1691481250.4638755-CDS-H-paniculata_contig4470:3932..39951691481250.4638755-CDS-H-paniculata_contig4470:3932..3995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4470 3933..3995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4470.11271.1prot_H-paniculata_contig4470.11271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4470 3066..3995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4470.11271.1

>prot_H-paniculata_contig4470.11271.1 ID=prot_H-paniculata_contig4470.11271.1|Name=mRNA_H-paniculata_contig4470.11271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
VIGDSTNDASQLMKREGVRSVPSFHFWKGGKKVDSVNGANEDALLDTVRS
LV*
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mRNA from alignment at H-paniculata_contig4470:3066..3995+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4470.11271.1 ID=mRNA_H-paniculata_contig4470.11271.1|Name=mRNA_H-paniculata_contig4470.11271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at H-paniculata_contig4470:3066..3995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATCGGAGACAGCACGAACGACGCGTCACAACTAATGAAAAGGGAGGG
CGTACGGTCGGTACCTTCGTTCCACTTCTGGAAGGGTGGCAAGAAGGTGC
GGGAGGGCGTGCGCGGGCAGTTACACCTACTGTTACGCCTTTTCACCCAT
AATGTAACGTTTCCGAGCAGTTGTCGTACATGAGTCAGAAGCGCCAGCCC
GACAAACCACGGCGACAATGTATCGCGACGAACCATGCCTGTGTGTACCA
TCGTGGTGTGGTTGAAGTAGCGACAAATGATTAGCTGTGCGGTCTGCCGT
ATGTTCGTCACCTCAGAAGAACCAACAGGTGTCGCCGGGGGTGCATGTGT
CTCGTCCCAGGAGAAAGCGAGATCGTTTTCGTGCCTATAGTTTTCAGAGA
CCCGAAAAGATCCAGGGCACGGTAGGCGACGCGAATAGTGGTAGAGCAAC
ACTCATAGCGGTGCTCGAGTAAGAGCGTCCCTTGTGTGCAGCTCTCCATC
TTGGAAGCTCAATTGCTTTATGGGGAATCTTGGAGCAGTCAACTAGTGGT
GATTGTGTGTATATAAAGCTTTCAAGGCACAAGCTGCATATCGCCATCAG
CACCCCCTAGTTTGGTCAGTTTGTGGACAAGTAGTCCCGCCACCCCTGCC
CGGAGCTAAGGGAAGAGACAATTGATCATCAGCGATCGCTCCTACAGACC
AGTAGTCTCTCTCGTCGAGGCCACCGTGTGGTCTGCGGTCCAACACCTTA
GGCACGCAACACATGAATACCCTCCCTCCTCTACTGCCTCTGCCGCCTTG
CGCGTGTACCTTGCTCTTGTATGTGTTGCTGGGGTTTGTTTGACGTTTTA
TCCGATGGCGTTGTCAGGTGGATTCCGTGAATGGGGCTAACGAGGATGCG
CTATTGGACACCGTCCGCTCTCTTGTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4470:3066..3995+

>mRNA_H-paniculata_contig4470.11271.1 ID=mRNA_H-paniculata_contig4470.11271.1|Name=mRNA_H-paniculata_contig4470.11271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig4470:3066..3995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATCGGAGACAGCACGAACGACGCGTCACAACTAATGAAAAGGGAGGG
CGTACGGTCGGTACCTTCGTTCCACTTCTGGAAGGGTGGCAAGAAGGTTA
TCGGAGACAGCACGAACGACGCGTCACAACTAATGAAAAGGGAGGGCGTA
CGGTCGGTACCTTCGTTCCACTTCTGGAAGGGTGGCAAGAAGGTGGATTC
CGTGAATGGGGCTAACGAGGATGCGCTATTGGACACCGTCCGCTCTCTTG
TTTAAGTGGATTCCGTGAATGGGGCTAACGAGGATGCGCTATTGGACACC
GTCCGCTCTCTTGTTTAA
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