mRNA_H-paniculata_contig44679.11267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 109 bits (272), Expect = 2.280e-25 Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 10 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
+C AC KG +Q + R R PLE+VHTDIAGP D S GG R+ + F+DD+ R C +Y L++KSEAL L++F+ + +G +K LRSD+G EYT K F +FC E+GI
Sbjct: 363 LCEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGI 477
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU) HSP 1 Score: 106 bits (265), Expect = 1.930e-24 Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
K GVC C G + ++P + + R PLEL+HTD+ GP+ + S GG ++ I F+DDY RMC VY LR KS + K+F+ V +G +K+LRSD+G EYT F ++C++ G+
Sbjct: 404 KEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 521
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU) HSP 1 Score: 106 bits (265), Expect = 1.940e-24 Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
K GVC C G + ++P + + R PLEL+HTD+ GP+ + S GG ++ I F+DDY RMC VY LR KS + K+F+ V +G +K+LRSD+G EYT F ++C++ G+
Sbjct: 96 KEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGGEYTSHEFLEYCSDLGM 213
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC) HSP 1 Score: 100 bits (250), Expect = 4.960e-24 Identity = 57/124 (45.97%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVA------RANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
K GVC+ CE+ +K+ ER EPLELVHTD+ GPV+ S GG R+AI F DDY R VY ++ KS++L LK++ +D+ + N LR LRSD G EYTG F+ FC +GI
Sbjct: 33 KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGVDFKNFCKNHGI 154
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6N2K750_SALVM (Integrase catalytic domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K750_SALVM) HSP 1 Score: 104 bits (260), Expect = 9.150e-24 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 10 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVDR-SFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
VC C G ++ K R++ PL+LVHTD+ GP+ S GG R+ I F+DDY R+C VY LR KS AL K+++ V +G ++K++RSD+G EYT F +FCAE GI
Sbjct: 19 VCEGCVTGKHHREKFDKGEAWRSSYPLQLVHTDLCGPMQHESNGGNRYFITFIDDYSRVCWVYFLRNKSNALTVFKKYKALVELQSGFKVKKMRSDRGGEYTSSEFERFCAEMGI 133
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS) HSP 1 Score: 104 bits (260), Expect = 9.350e-24 Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 10 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
C AC G S++ K + +T E LE+VHTD+ GP+ ++S G R+ ++F+DDY MC VY L+QKSE K+F+ V + +G IK LRSD G E+T F +FC E GI
Sbjct: 489 ACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRFCEEEGI 603
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.810e-23 Identity = 58/124 (46.77%), Postives = 74/124 (59.68%), Query Frame = 1
Query: 1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVA------RANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
K GVC CE+ +K+ ER EPLELVHTD+ GPV+ S GG R+AI F DDY R VY ++ KSE+L LK++ +D+ + N LR LRSD G EYTG F+ FC +GI
Sbjct: 53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRG--LRSDNGGEYTGIDFKNFCKNHGI 174
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A2I0V7V6_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V7V6_9ASPA) HSP 1 Score: 97.1 bits (240), Expect = 2.100e-23 Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 1
Query: 10 VCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPV-DRSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
+C C G ++ R +PL+L+HTD+ GP+ SFG R+ + F+DDY R VY L++KSEA K+F+ + +G IK +RSD+G E+T K F+++C E+GI
Sbjct: 19 ICEGCVFGKQPRKSFPNEASFRAKKPLQLIHTDVCGPIAPASFGKHRYFLTFIDDYSRKIWVYFLKEKSEAFTMFKKFKASTEKESGFLIKSIRSDRGGEFTSKAFKEYCEEHGI 133
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE) HSP 1 Score: 99.0 bits (245), Expect = 4.210e-23 Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = 1
Query: 4 LGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARANGLRIKRLRSDQGEEYTGKPFRQFCAENGI 351
L C AC G ++QP K E R+ L+L+H+D+ GP+ S GG ++ + F+DD+ R CKVY ++ KSE L K+FER + G ++ RLRSD G EY F+++ GI
Sbjct: 85 LPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECGHKVARLRSDNGGEYISSEFQEYLKAQGI 201
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 4.650e-23 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 1 KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVD-RSFGGCRFAIIFVDDYRRMCKVYTLRQKSEALWALKQFERDVARAN-GLRIKRL---RSDQGEEYTGKPFRQFCAENGI 351
K GVC CE+ +K+ ER EPLELVHTD+ GPV+ S GG R+AI F DDY R VY ++ KSE+L LK++ + ++ + ++K L RSD EYTG F+ FC +GI
Sbjct: 15 KPGVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIKGISVLHRDSKVKTLIGLRSDNDGEYTGVDFKNFCKNHGI 136 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44679.11267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig44679.11267.1 >prot_H-paniculata_contig44679.11267.1 ID=prot_H-paniculata_contig44679.11267.1|Name=mRNA_H-paniculata_contig44679.11267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp KLGVCSACEKGNASKQPVKKHREERTTEPLELVHTDIAGPVDRSFGGCRFback to top mRNA from alignment at H-paniculata_contig44679:1253..1603+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig44679.11267.1 ID=mRNA_H-paniculata_contig44679.11267.1|Name=mRNA_H-paniculata_contig44679.11267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig44679:1253..1603+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig44679:1253..1603+ >mRNA_H-paniculata_contig44679.11267.1 ID=mRNA_H-paniculata_contig44679.11267.1|Name=mRNA_H-paniculata_contig44679.11267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig44679:1253..1603+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |