mRNA_H-paniculata_contig44673.11266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44673.11266.1
Unique NamemRNA_H-paniculata_contig44673.11266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.850e-7
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GP++ +S GG R+AI F DDY+R R VYT+R
Sbjct:   24 ERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMR 69
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BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.980e-7
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:   38 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 83
[Close]
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7TWC6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWC6_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.960e-7
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:  327 EPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:   45 EPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 86
[Close]
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 56.2 bits (134), Expect = 1.140e-6
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:   56 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 101
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BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: A0A8H8JVA7_9AGAM (Pol polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JVA7_9AGAM)

HSP 1 Score: 57.0 bits (136), Expect = 1.320e-6
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 3 
Query:  321 TTEPLELVHTDIAGPVDKSFGGCRFAIIFVDDYSRMRKVYTLR 449
            T++PLEL+H+D+ GP+D S GG R+ ++FVDDY+RM  V  L+
Sbjct:  139 TSQPLELLHSDVCGPLDASIGGVRYVLLFVDDYTRMAWVCLLK 181
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BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: F0WA28_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WA28_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.770e-6
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 3 
Query:  192 CSRPSHSRAATRHKVKWEAPYLLGV*EGE-SVEAARKKKDREEWTTEPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTLR 449
            C    H      H V  +     G  +G+ SV+   K K++E  TT+ LE+VH+DI GP+   S GG R+ + F DDYSR+  VY L+
Sbjct:  217 CVSGIHVNELLAHDVYDDEDVCSGCAKGKASVKPFNKLKNKEYSTTDVLEIVHSDIMGPITPTSVGGSRYVLTFTDDYSRLVTVYFLK 304
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BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.870e-6
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 3 
Query:  297 KKKDREEWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            K ++R E   +PLELVHTD+ GPV+ +S GG R+AI F DDY+R R +Y +R
Sbjct:  186 KSRERAE---KPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRMIYPMR 234
[Close]
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.940e-6
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:   76 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 121
[Close]
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.300e-6
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:   76 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 121
[Close]
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.310e-6
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 3 
Query:  315 EWTTEPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLR 449
            E   EPLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++
Sbjct:  126 ERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMK 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44673.11266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T9C2_9STRA1.850e-760.87Copia-like retrotransposable element (Fragment) n=... [more]
W7SYS1_9STRA4.980e-758.70Retrovirus-related pol polyprotein from transposon... [more]
W7TWC6_9STRA5.960e-761.90Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
K8YS61_NANGC1.140e-658.70Retrovirus-related pol polyprotein from transposon... [more]
A0A8H8JVA7_9AGAM1.320e-653.49Pol polyprotein/retrotransposon n=1 Tax=Ceratobasi... [more]
F0WA28_9STRA1.770e-638.64Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
W7THS2_9STRA1.870e-653.85Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA1.940e-658.70Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA2.300e-658.70Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA2.310e-658.70Copia-like retrotransposable element n=1 Tax=Nanno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44673contigH-paniculata_contig44673:841..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44673.11266.1prot_H-paniculata_contig44673.11266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44673 853..1197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930343.7198925-UTR-H-paniculata_contig44673:840..8521622930343.7198925-UTR-H-paniculata_contig44673:840..852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 841..852 +
1691481250.1369915-UTR-H-paniculata_contig44673:840..8521691481250.1369915-UTR-H-paniculata_contig44673:840..852Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 841..852 +
1622930343.7591147-UTR-H-paniculata_contig44673:1197..12911622930343.7591147-UTR-H-paniculata_contig44673:1197..1291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 1198..1291 +
1691481250.156095-UTR-H-paniculata_contig44673:1197..12911691481250.156095-UTR-H-paniculata_contig44673:1197..1291Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44673 1198..1291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930343.7389874-CDS-H-paniculata_contig44673:852..11971622930343.7389874-CDS-H-paniculata_contig44673:852..1197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 853..1197 +
1691481250.1468601-CDS-H-paniculata_contig44673:852..11971691481250.1468601-CDS-H-paniculata_contig44673:852..1197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44673 853..1197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44673.11266.1

>prot_H-paniculata_contig44673.11266.1 ID=prot_H-paniculata_contig44673.11266.1|Name=mRNA_H-paniculata_contig44673.11266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=115bp
MEYSLRMIVGDEVEIQAAKRAIGKQVKILRLFSNDCTTPKNNEKRQQVVD
TKLLHERLGHVRGLPTVARQQGIRLSGKLRIYSACEKGKASKQPVKKRIE
KSGRPSRWSWCTPT*
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mRNA from alignment at H-paniculata_contig44673:841..1291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44673.11266.1 ID=mRNA_H-paniculata_contig44673.11266.1|Name=mRNA_H-paniculata_contig44673.11266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=451bp|location=Sequence derived from alignment at H-paniculata_contig44673:841..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACATCGCGGATGGAGTATTCATTACGTATGATAGTGGGGGACGAAGT
GGAGATACAGGCCGCAAAGCGGGCTATCGGAAAACAAGTGAAGATTCTTC
GATTATTCAGCAACGACTGCACCACCCCAAAGAACAATGAGAAGAGGCAA
CAGGTGGTGGACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGG
CCTTCCCACAGTCGCGCGGCAACAAGGCATAAGGTTAAGTGGGAAGCTCC
GTATCTACTCGGCGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAA
AAAAGGATCGAGAAGAGTGGACGACCGAGCCGTTGGAGCTGGTGCACACC
GACATAGCCGGACCGGTGGACAAATCCTTCGGAGGATGTCGCTTCGCCAT
CATCTTCGTCGACGACTACAGCAGAATGCGCAAAGTCTATACCTTGCGAC
A
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Coding sequence (CDS) from alignment at H-paniculata_contig44673:841..1291+

>mRNA_H-paniculata_contig44673.11266.1 ID=mRNA_H-paniculata_contig44673.11266.1|Name=mRNA_H-paniculata_contig44673.11266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at H-paniculata_contig44673:841..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTATTCATTACGTATGATAGTGGGGGACGAAGTGGAGATACAGGC
CGCAAAGCGGGCTATCGGAAAACAAGTGAAGATTCTTCGATTATTCAGCA
ACGACTGCACCACCCCAAAGAACAATGAGAAGAGGCAACAGGTGGTGGAC
ACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGGCCTTCCCACAGT
CGCGCGGCAACAAGGCATAAGGTTAAGTGGGAAGCTCCGTATCTACTCGG
CGTGTGAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAAAAGGATCGAG
AAGAGTGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAGATGGA
GTATTCATTACGTATGATAGTGGGGGACGAAGTGGAGATACAGGCCGCAA
AGCGGGCTATCGGAAAACAAGTGAAGATTCTTCGATTATTCAGCAACGAC
TGCACCACCCCAAAGAACAATGAGAAGAGGCAACAGGTGGTGGACACCAA
GTTACTACACGAGCGACTTGGGCATGTTCGAGGCCTTCCCACAGTCGCGC
GGCAACAAGGCATAAGGTTAAGTGGGAAGCTCCGTATCTACTCGGCGTGT
GAGAAGGGGAAAGCGTCGAAGCAGCCCGTAAAAAAAAGGATCGAGAAGAG
TGGACGACCGAGCCGTTGGAGCTGGTGCACACCGACATAG
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