mRNA_H-paniculata_contig4463.11255.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4463.11255.1
Unique NamemRNA_H-paniculata_contig4463.11255.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4463.11255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4463contigH-paniculata_contig4463:3072..3672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size602
Cds size390
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.4645634-UTR-H-paniculata_contig4463:3071..32821622930342.4645634-UTR-H-paniculata_contig4463:3071..3282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4463 3072..3282 +
1691481249.6439443-UTR-H-paniculata_contig4463:3071..32821691481249.6439443-UTR-H-paniculata_contig4463:3071..3282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4463 3072..3282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.4825504-CDS-H-paniculata_contig4463:3282..36721622930342.4825504-CDS-H-paniculata_contig4463:3282..3672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 3283..3672 +
1691481249.6555793-CDS-H-paniculata_contig4463:3282..36721691481249.6555793-CDS-H-paniculata_contig4463:3282..3672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 3283..3672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4463.11255.1prot_H-paniculata_contig4463.11255.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4463 3283..3672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4463.11255.1

>prot_H-paniculata_contig4463.11255.1 ID=prot_H-paniculata_contig4463.11255.1|Name=mRNA_H-paniculata_contig4463.11255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MAKGNGEDGQGSTGKYRGDTDLLGNPTEVLWPSPTEPLPLPPAPALPAPT
FLLLPRDDTAEEIEAPPPRPPPPVASMLTAPAPTSLLPTPMPSRVRADET
ESVPSEEAEAPRPLPLLPPRVEVFPLPLPP
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mRNA from alignment at H-paniculata_contig4463:3072..3672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4463.11255.1 ID=mRNA_H-paniculata_contig4463.11255.1|Name=mRNA_H-paniculata_contig4463.11255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=601bp|location=Sequence derived from alignment at H-paniculata_contig4463:3072..3672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCGGCTGTGGCGAAGCCCAATAGTGTCCCGTGCGTCCTCCAGCCTCCA
CCGGCGGCTCCCTCGTCCCACCGCGGCGAAGCTTGCTTGCGGCAAGCGTC
GGCGGAGGGCTCGTCAGCAGCCCGAACGGACTCCCGGCGCGCCCATGCCC
CCCGGGATCCCCGTCTCCATCCACCTCACTGAGCCCGTCACCCGGTGGCG
GCGCCGCCGGCATGGCCAAGGGCAATGGCGAGGACGGCCAGGGGAGCACG
GGCAAATACAGAGGTGACACCGACCTCCTGGGCAATCCGACGGAAGTGCT
GTGGCCGAGCCCCACAGAGCCGCTTCCGCTCCCGCCAGCGCCGGCGCTGC
CGGCACCGACATTCCTACTCCTTCCGCGAGACGACACAGCCGAGGAAATT
GAGGCGCCACCGCCGCGGCCACCACCACCGGTGGCATCCATGTTGACAGC
GCCAGCACCAACATCGTTACTCCCAACTCCGATGCCAAGCAGAGTGCGGG
CAGACGAAACGGAGTCTGTGCCCAGCGAGGAAGCTGAGGCACCGCGGCCT
CTGCCGCTGTTGCCTCCGCGTGTAGAAGTTTTCCCTCTACCCCTTCCTCC
C
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Coding sequence (CDS) from alignment at H-paniculata_contig4463:3072..3672+

>mRNA_H-paniculata_contig4463.11255.1 ID=mRNA_H-paniculata_contig4463.11255.1|Name=mRNA_H-paniculata_contig4463.11255.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig4463:3072..3672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAGGGCAATGGCGAGGACGGCCAGGGGAGCACGGGCAAATACAG
AGGTGACACCGACCTCCTGGGCAATCCGACGGAAGTGCTGTGGCCGAGCC
CCACAGAGCCGCTTCCGCTCCCGCCAGCGCCGGCGCTGCCGGCACCGACA
TTCCTACTCCTTCCGCGAGACGACACAGCCGAGGAAATTGAGGCGCCACC
GCCGCGGCCACCACCACCGGTGGCATCCATGTTGACAGCGCCAGCACCAA
CATCGTTACTCCCAACTCCGATGCCAAGCAGAGTGCGGGCAGACGAAACG
GAGTCTGTGCCCAGCGAGGAAGCTGAGGCACCGCGGCCTCTGCCGCTGTT
GCCTCCGCGTGTAGAAGTTTTCCCTCTACCCCTTCCTCCCATGGCCAAGG
GCAATGGCGAGGACGGCCAGGGGAGCACGGGCAAATACAGAGGTGACACC
GACCTCCTGGGCAATCCGACGGAAGTGCTGTGGCCGAGCCCCACAGAGCC
GCTTCCGCTCCCGCCAGCGCCGGCGCTGCCGGCACCGACATTCCTACTCC
TTCCGCGAGACGACACAGCCGAGGAAATTGAGGCGCCACCGCCGCGGCCA
CCACCACCGGTGGCATCCATGTTGACAGCGCCAGCACCAACATCGTTACT
CCCAACTCCGATGCCAAGCAGAGTGCGGGCAGACGAAACGGAGTCTGTGC
CCAGCGAGGAAGCTGAGGCACCGCGGCCTCTGCCGCTGTTGCCTCCGCGT
GTAGAAGTTTTCCCTCTACCCCTTCCTCCC
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