mRNA_H-paniculata_contig4463.11254.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4463.11254.1
Unique NamemRNA_H-paniculata_contig4463.11254.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4463.11254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4463contigH-paniculata_contig4463:716..3028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1704
Cds size1671
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4463.11254.1prot_H-paniculata_contig4463.11254.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4463 716..2996 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.1966689-CDS-H-paniculata_contig4463:715..23831622930342.1966689-CDS-H-paniculata_contig4463:715..2383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 716..2383 -
1691481249.5574996-CDS-H-paniculata_contig4463:715..23831691481249.5574996-CDS-H-paniculata_contig4463:715..2383Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 716..2383 -
1622930342.2164025-CDS-H-paniculata_contig4463:2993..29961622930342.2164025-CDS-H-paniculata_contig4463:2993..2996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 2994..2996 -
1691481249.5698597-CDS-H-paniculata_contig4463:2993..29961691481249.5698597-CDS-H-paniculata_contig4463:2993..2996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4463 2994..2996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930342.2342415-UTR-H-paniculata_contig4463:2996..30281622930342.2342415-UTR-H-paniculata_contig4463:2996..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4463 2997..3028 -
1691481249.5837295-UTR-H-paniculata_contig4463:2996..30281691481249.5837295-UTR-H-paniculata_contig4463:2996..3028Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4463 2997..3028 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4463.11254.1

>prot_H-paniculata_contig4463.11254.1 ID=prot_H-paniculata_contig4463.11254.1|Name=mRNA_H-paniculata_contig4463.11254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=557bp
MSSPFLSREQLLGGVGTGQRADDGSTVGMPMMGYHMDLRNSHSTIAGDGS
ATGSSETFRPHAMRGNNHELNRSADPNQLPPGVWPLLSNPSQVVAHPCPS
TLRVSSSSFIVDPHAQATPVSGSGAHSDTERDQGGAAGAPGVGGGIEDNS
SSFSSRHQQAQQLHQQQAWGSYSGAMRVLPRPVPPLAGRSLSLTSGPAAT
AEEDDPVLTRLAGAVGHDQDHGHMAAARWHQGGGGGGGGGVGSDGSGDHQ
GRGSGPLPSRQHHANNGGGGGAAGWGEFNAIASLPNRHGSINGAGGIGDG
SADGVSSNMGVGVAGGGGLAAAGSSPSSGVDSARSSGGGGSLGGGAGMGW
VAEGLAALAASPSASTKTHALRQQIVKQPLISLQSHMHHQGRLPPSQQHQ
EQQQHGMPASTLISDFEVSLATRGAGGDGSSSVSAAAAARGGSPNTTAAL
EAFSVGMAVNGNMDEFRTSMGMPCTLHEAAVAAGNNGYSRGGETASPPVW
TTVRQHDRSNVSGMSSSSPRSSSPSQAYFSSSAGGSGPLHDSETDGGWGS
TGSGQGG
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mRNA from alignment at H-paniculata_contig4463:716..3028-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4463.11254.1 ID=mRNA_H-paniculata_contig4463.11254.1|Name=mRNA_H-paniculata_contig4463.11254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2313bp|location=Sequence derived from alignment at H-paniculata_contig4463:716..3028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGTGGTCATTCGTCGAAGCGTTACAGAATGGTGAGCTTTCCCTGG
GTTGTGTCGAGGTATAGAGGGATGAGTAGTAGGTGTTCCTAGGCAAAAGA
TTTGGGTTGTAGTGTAGTGTTGTGTGATTGGTGATGGTGTCGATGTGGTG
TGGCAGTTTGCGTGTGTTGTGACCATGCTGCAAAACTTACATACATTACC
TGTTGAAGGCAACCTGACAGACCGTGTCGTGTTTTATTCAAAAGTGATTT
TCGTGGCACCTGCTCGTATACATATGACTTGGCTTTTCGCCTCGAGTGTG
GGACTGCTTGCCTCGCAAATTTTATCCTCTGTGTGTTTGTTTTCGTGCGT
TTGTGGTTTGTGATCACTTGGCTCTGTTATGGGGGCTCTCCTCCTGACGT
GAGTCCGATGAGTTTATTTTAGGCGTTCGTGCAATAAATCAAAGTGAGGT
GGTGCTCATGACACCGAGACGTTCGTAGTTTGAGATGCAGGAGAGCACGG
TACGATGAGCTGGTTTCAGTATCGCGTGGCAGCTAGTATGCAAGTGGCGG
TTTACATTTATTCAAACGCGATATAAGAAAAAATCACATAAGCGAAACAC
CTTCTGCAACCCCTCCCCCTCCCCCGCTGCGGTCCCTCACTGCAGTCATC
TCCGTTTCTCTCTCGAGAGCAGCTGCTGGGAGGGGTCGGAACGGGGCAGA
GGGCCGACGATGGCAGCACGGTCGGCATGCCTATGATGGGCTACCATATG
GACCTCCGCAACAGCCACAGCACAATCGCCGGCGACGGCAGTGCTACCGG
ATCGTCCGAAACCTTCCGCCCGCACGCCATGCGCGGCAACAACCACGAGT
TGAACCGGTCGGCAGACCCTAATCAGCTCCCTCCGGGGGTGTGGCCCTTG
TTGAGTAATCCGAGTCAAGTGGTCGCCCACCCTTGCCCCTCCACCCTCCG
CGTTTCTTCGTCGTCGTTCATTGTCGACCCTCACGCGCAAGCCACTCCCG
TTAGCGGCAGCGGCGCTCACTCGGATACGGAACGGGATCAGGGAGGCGCA
GCTGGTGCTCCTGGGGTAGGGGGGGGCATAGAGGACAACAGCAGTAGCTT
TTCTTCACGCCACCAGCAGGCGCAGCAGCTTCACCAACAGCAGGCCTGGG
GGAGCTACTCGGGGGCCATGCGCGTCCTTCCCCGTCCAGTTCCCCCTCTG
GCCGGAAGGTCCCTTTCGCTGACTTCCGGACCCGCCGCTACCGCGGAAGA
GGATGACCCTGTGCTGACGCGCCTGGCGGGAGCGGTCGGCCATGACCAGG
ACCATGGACACATGGCCGCGGCGAGATGGCACCAAGGAGGAGGAGGAGGC
GGCGGGGGAGGTGTGGGATCTGACGGCAGTGGAGATCACCAGGGGCGTGG
CTCCGGCCCCCTGCCATCTCGCCAGCATCACGCGAACAACGGGGGCGGCG
GCGGGGCCGCTGGATGGGGAGAGTTCAACGCTATTGCGTCTCTGCCCAAT
CGGCACGGCAGCATAAACGGTGCGGGCGGTATCGGCGATGGTTCTGCTGA
TGGCGTCTCGAGCAACATGGGAGTCGGAGTGGCCGGCGGTGGTGGCCTAG
CAGCGGCGGGCTCCAGCCCGTCGTCCGGAGTAGACTCGGCGCGCAGCAGC
GGTGGCGGCGGGAGTCTCGGAGGAGGTGCTGGCATGGGGTGGGTCGCTGA
AGGACTGGCGGCGTTGGCCGCTTCTCCTTCGGCGTCGACCAAGACGCACG
CGCTTCGGCAGCAGATAGTCAAACAGCCCCTCATATCCTTGCAGAGCCAC
ATGCATCATCAAGGCAGGTTGCCGCCTTCGCAGCAGCACCAGGAGCAGCA
GCAGCATGGGATGCCGGCATCTACTTTGATAAGCGATTTCGAGGTGTCTC
TTGCGACTCGAGGAGCTGGAGGCGATGGAAGTTCCAGTGTTTCGGCGGCA
GCGGCAGCGCGCGGGGGCTCGCCTAATACCACCGCCGCACTAGAAGCTTT
CAGTGTGGGAATGGCGGTGAACGGCAACATGGACGAGTTTCGCACCAGTA
TGGGTATGCCGTGCACCCTGCACGAGGCGGCGGTGGCGGCAGGGAACAAC
GGATACAGCAGAGGAGGTGAGACCGCTTCGCCGCCAGTGTGGACGACTGT
CAGACAACACGACCGATCTAATGTTTCCGGGATGTCATCGTCGTCGCCCC
GCAGCAGCTCTCCGTCTCAGGCGTATTTTTCCAGCTCTGCCGGCGGCAGC
GGCCCCCTTCATGACAGCGAGACCGACGGGGGCTGGGGAAGCACCGGTAG
CGGGCAAGGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4463:716..3028-

>mRNA_H-paniculata_contig4463.11254.1 ID=mRNA_H-paniculata_contig4463.11254.1|Name=mRNA_H-paniculata_contig4463.11254.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3342bp|location=Sequence derived from alignment at H-paniculata_contig4463:716..3028- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGTCATCTCCGTTTCTCTCTCGAGAGCAGCTGCTGGGAGGGGTCGG
AACGGGGCAGAGGGCCGACGATGGCAGCACGGTCGGCATGCCTATGATGG
GCTACCATATGGACCTCCGCAACAGCCACAGCACAATCGCCGGCGACGGC
AGTGCTACCGGATCGTCCGAAACCTTCCGCCCGCACGCCATGCGCGGCAA
CAACCACGAGTTGAACCGGTCGGCAGACCCTAATCAGCTCCCTCCGGGGG
TGTGGCCCTTGTTGAGTAATCCGAGTCAAGTGGTCGCCCACCCTTGCCCC
TCCACCCTCCGCGTTTCTTCGTCGTCGTTCATTGTCGACCCTCACGCGCA
AGCCACTCCCGTTAGCGGCAGCGGCGCTCACTCGGATACGGAACGGGATC
AGGGAGGCGCAGCTGGTGCTCCTGGGGTAGGGGGGGGCATAGAGGACAAC
AGCAGTAGCTTTTCTTCACGCCACCAGCAGGCGCAGCAGCTTCACCAACA
GCAGGCCTGGGGGAGCTACTCGGGGGCCATGCGCGTCCTTCCCCGTCCAG
TTCCCCCTCTGGCCGGAAGGTCCCTTTCGCTGACTTCCGGACCCGCCGCT
ACCGCGGAAGAGGATGACCCTGTGCTGACGCGCCTGGCGGGAGCGGTCGG
CCATGACCAGGACCATGGACACATGGCCGCGGCGAGATGGCACCAAGGAG
GAGGAGGAGGCGGCGGGGGAGGTGTGGGATCTGACGGCAGTGGAGATCAC
CAGGGGCGTGGCTCCGGCCCCCTGCCATCTCGCCAGCATCACGCGAACAA
CGGGGGCGGCGGCGGGGCCGCTGGATGGGGAGAGTTCAACGCTATTGCGT
CTCTGCCCAATCGGCACGGCAGCATAAACGGTGCGGGCGGTATCGGCGAT
GGTTCTGCTGATGGCGTCTCGAGCAACATGGGAGTCGGAGTGGCCGGCGG
TGGTGGCCTAGCAGCGGCGGGCTCCAGCCCGTCGTCCGGAGTAGACTCGG
CGCGCAGCAGCGGTGGCGGCGGGAGTCTCGGAGGAGGTGCTGGCATGGGG
TGGGTCGCTGAAGGACTGGCGGCGTTGGCCGCTTCTCCTTCGGCGTCGAC
CAAGACGCACGCGCTTCGGCAGCAGATAGTCAAACAGCCCCTCATATCCT
TGCAGAGCCACATGCATCATCAAGGCAGGTTGCCGCCTTCGCAGCAGCAC
CAGGAGCAGCAGCAGCATGGGATGCCGGCATCTACTTTGATAAGCGATTT
CGAGGTGTCTCTTGCGACTCGAGGAGCTGGAGGCGATGGAAGTTCCAGTG
TTTCGGCGGCAGCGGCAGCGCGCGGGGGCTCGCCTAATACCACCGCCGCA
CTAGAAGCTTTCAGTGTGGGAATGGCGGTGAACGGCAACATGGACGAGTT
TCGCACCAGTATGGGTATGCCGTGCACCCTGCACGAGGCGGCGGTGGCGG
CAGGGAACAACGGATACAGCAGAGGAGGTGAGACCGCTTCGCCGCCAGTG
TGGACGACTGTCAGACAACACGACCGATCTAATGTTTCCGGGATGTCATC
GTCGTCGCCCCGCAGCAGCTCTCCGTCTCAGGCGTATTTTTCCAGCTCTG
CCGGCGGCAGCGGCCCCCTTCATGACAGCGAGACCGACGGGGGCTGGGGA
AGCACCGGTAGCGGGCAAGGAGGATCATCTCCGTTTCTCTCTCGAGAGCA
GCTGCTGGGAGGGGTCGGAACGGGGCAGAGGGCCGACGATGGCAGCACGG
TCGGCATGCCTATGATGGGCTACCATATGGACCTCCGCAACAGCCACAGC
ACAATCGCCGGCGACGGCAGTGCTACCGGATCGTCCGAAACCTTCCGCCC
GCACGCCATGCGCGGCAACAACCACGAGTTGAACCGGTCGGCAGACCCTA
ATCAGCTCCCTCCGGGGGTGTGGCCCTTGTTGAGTAATCCGAGTCAAGTG
GTCGCCCACCCTTGCCCCTCCACCCTCCGCGTTTCTTCGTCGTCGTTCAT
TGTCGACCCTCACGCGCAAGCCACTCCCGTTAGCGGCAGCGGCGCTCACT
CGGATACGGAACGGGATCAGGGAGGCGCAGCTGGTGCTCCTGGGGTAGGG
GGGGGCATAGAGGACAACAGCAGTAGCTTTTCTTCACGCCACCAGCAGGC
GCAGCAGCTTCACCAACAGCAGGCCTGGGGGAGCTACTCGGGGGCCATGC
GCGTCCTTCCCCGTCCAGTTCCCCCTCTGGCCGGAAGGTCCCTTTCGCTG
ACTTCCGGACCCGCCGCTACCGCGGAAGAGGATGACCCTGTGCTGACGCG
CCTGGCGGGAGCGGTCGGCCATGACCAGGACCATGGACACATGGCCGCGG
CGAGATGGCACCAAGGAGGAGGAGGAGGCGGCGGGGGAGGTGTGGGATCT
GACGGCAGTGGAGATCACCAGGGGCGTGGCTCCGGCCCCCTGCCATCTCG
CCAGCATCACGCGAACAACGGGGGCGGCGGCGGGGCCGCTGGATGGGGAG
AGTTCAACGCTATTGCGTCTCTGCCCAATCGGCACGGCAGCATAAACGGT
GCGGGCGGTATCGGCGATGGTTCTGCTGATGGCGTCTCGAGCAACATGGG
AGTCGGAGTGGCCGGCGGTGGTGGCCTAGCAGCGGCGGGCTCCAGCCCGT
CGTCCGGAGTAGACTCGGCGCGCAGCAGCGGTGGCGGCGGGAGTCTCGGA
GGAGGTGCTGGCATGGGGTGGGTCGCTGAAGGACTGGCGGCGTTGGCCGC
TTCTCCTTCGGCGTCGACCAAGACGCACGCGCTTCGGCAGCAGATAGTCA
AACAGCCCCTCATATCCTTGCAGAGCCACATGCATCATCAAGGCAGGTTG
CCGCCTTCGCAGCAGCACCAGGAGCAGCAGCAGCATGGGATGCCGGCATC
TACTTTGATAAGCGATTTCGAGGTGTCTCTTGCGACTCGAGGAGCTGGAG
GCGATGGAAGTTCCAGTGTTTCGGCGGCAGCGGCAGCGCGCGGGGGCTCG
CCTAATACCACCGCCGCACTAGAAGCTTTCAGTGTGGGAATGGCGGTGAA
CGGCAACATGGACGAGTTTCGCACCAGTATGGGTATGCCGTGCACCCTGC
ACGAGGCGGCGGTGGCGGCAGGGAACAACGGATACAGCAGAGGAGGTGAG
ACCGCTTCGCCGCCAGTGTGGACGACTGTCAGACAACACGACCGATCTAA
TGTTTCCGGGATGTCATCGTCGTCGCCCCGCAGCAGCTCTCCGTCTCAGG
CGTATTTTTCCAGCTCTGCCGGCGGCAGCGGCCCCCTTCATGACAGCGAG
ACCGACGGGGGCTGGGGAAGCACCGGTAGCGGGCAAGGAGGA
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