mRNA_H-paniculata_contig44560.11248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44560.11248.1
Unique NamemRNA_H-paniculata_contig44560.11248.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Match: D8LDD4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-9
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 QLSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVR 114
            +++NCNG GQCGTCVV V +++GWD R  WE  KLK R
Sbjct:  198 KMTNCNGGGQCGTCVVQVVEAEGWDPRSEWEAGKLKGR 235
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BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Match: A0A836CP36_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP36_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.410e-5
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:    4 LSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVR 114
            ++NCNGAGQCGTCV  V    GW  R ++E +KLK R
Sbjct:  178 MTNCNGAGQCGTCVTKVV-GQGWSPRSDYEANKLKGR 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44560.11248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDD4_ECTSI2.250e-960.53PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CP36_9STRA3.410e-556.762Fe-2S ferredoxin-type domain-containing protein n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44560contigH-paniculata_contig44560:1355..1489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue3.1e-07
Seed eggNOG ortholog2880.D8LDD4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs2DJ3Z@1,2S5ZV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930341.1406043-CDS-H-paniculata_contig44560:1354..14891622930341.1406043-CDS-H-paniculata_contig44560:1354..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44560 1355..1489 +
1691481249.0083644-CDS-H-paniculata_contig44560:1354..14891691481249.0083644-CDS-H-paniculata_contig44560:1354..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44560 1355..1489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44560.11248.1prot_H-paniculata_contig44560.11248.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44560 1355..1489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44560.11248.1

>prot_H-paniculata_contig44560.11248.1 ID=prot_H-paniculata_contig44560.11248.1|Name=mRNA_H-paniculata_contig44560.11248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QLSNCNGAGQCGTCVVDVEKSDGWDERPNWEGDKLKVRIAICDR*
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mRNA from alignment at H-paniculata_contig44560:1355..1489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44560.11248.1 ID=mRNA_H-paniculata_contig44560.11248.1|Name=mRNA_H-paniculata_contig44560.11248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig44560:1355..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGTCCAACTGCAATGGCGCGGGCCAGTGTGGTACGTGCGTAGTAGA
CGTGGAGAAGTCAGACGGGTGGGACGAGAGGCCCAACTGGGAGGGAGACA
AACTTAAGGTGCGTATCGCTATCTGCGACCGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig44560:1355..1489+

>mRNA_H-paniculata_contig44560.11248.1 ID=mRNA_H-paniculata_contig44560.11248.1|Name=mRNA_H-paniculata_contig44560.11248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig44560:1355..1489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTGTCCAACTGCAATGGCGCGGGCCAGTGTGGTACGTGCGTAGTAGA
CGTGGAGAAGTCAGACGGGTGGGACGAGAGGCCCAACTGGGAGGGAGACA
AACTTAAGGTGCGTATCGCTATCTGCGACCGCTAGCAGCTGTCCAACTGC
AATGGCGCGGGCCAGTGTGGTACGTGCGTAGTAGACGTGGAGAAGTCAGA
CGGGTGGGACGAGAGGCCCAACTGGGAGGGAGACAAACTTAAGGTGCGTA
TCGCTATCTGCGACCGCTAG
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