mRNA_H-paniculata_contig4454.11246.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4454.11246.1
Unique NamemRNA_H-paniculata_contig4454.11246.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4454.11246.1 vs. uniprot
Match: A0A5E4QNJ9_9NEOP (Uncharacterized protein (Fragment) n=1 Tax=Leptidea sinapis TaxID=189913 RepID=A0A5E4QNJ9_9NEOP)

HSP 1 Score: 49.7 bits (117), Expect = 9.260e-5
Identity = 36/98 (36.73%), Postives = 51/98 (52.04%), Query Frame = 1 
Query:  142 CAEMERALFDHTKNGSMALMLAASTGHFGSLRFLRDDAVVDLSDRHNRGWMAFMFAAGEENYLEIGRYLCDAGPDSCDYDGDGASPLYAAAHGGHAEI 435
            C  +++ L D  K+G+  L+L+A+ GH   +  L      D +     G  A  FAA +  +L+I R L DAG        DGASPL+ AAH GHA +
Sbjct:   32 CERLQQ-LLDTGKDGTTPLILSAAMGHTQCVAELLAQG-ADPACCRTTGTSALFFAA-QGGFLDIARLLLDAGAAIDAPSMDGASPLFKAAHKGHAPV 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4454.11246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5E4QNJ9_9NEOP9.260e-536.73Uncharacterized protein (Fragment) n=1 Tax=Leptide... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4454contigH-paniculata_contig4454:14717..15151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog1033740.CAEW01000036_gene1794
KEGG koko:K06867
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs1V2DE@1239,26FP6@186818,4HGU4@91061,COG0666@1,COG0666@2
COG Functional cat.S
Best tax levelPlanococcaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size435
Cds size426
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930341.0094879-UTR-H-paniculata_contig4454:14716..147251622930341.0094879-UTR-H-paniculata_contig4454:14716..14725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4454 14717..14725 +
1691481248.9430463-UTR-H-paniculata_contig4454:14716..147251691481248.9430463-UTR-H-paniculata_contig4454:14716..14725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4454 14717..14725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930341.0286868-CDS-H-paniculata_contig4454:14725..151511622930341.0286868-CDS-H-paniculata_contig4454:14725..15151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4454 14726..15151 +
1691481248.9570441-CDS-H-paniculata_contig4454:14725..151511691481248.9570441-CDS-H-paniculata_contig4454:14725..15151Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4454 14726..15151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4454.11246.1prot_H-paniculata_contig4454.11246.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4454 14726..15151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4454.11246.1

>prot_H-paniculata_contig4454.11246.1 ID=prot_H-paniculata_contig4454.11246.1|Name=mRNA_H-paniculata_contig4454.11246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MTAAVNRHLEIVCFLREAWADLFDCNNEGSTVLILAGTWKLCDPCAEMER
ALFDHTKNGSMALMLAASTGHFGSLRFLRDDAVVDLSDRHNRGWMAFMFA
AGEENYLEIGRYLCDAGPDSCDYDGDGASPLYAAAHGGHAEI
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mRNA from alignment at H-paniculata_contig4454:14717..15151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4454.11246.1 ID=mRNA_H-paniculata_contig4454.11246.1|Name=mRNA_H-paniculata_contig4454.11246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig4454:14717..15151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCGCCTTCATGACCGCAGCTGTAAATAGGCACTTGGAGATTGTGTGTTT
CCTGCGTGAGGCTTGGGCGGACTTGTTTGATTGCAATAATGAGGGTTCGA
CAGTTTTGATCTTAGCAGGCACTTGGAAATTGTGCGATCCCTGTGCCGAG
ATGGAGCGGGCTTTATTTGATCACACGAAGAACGGTTCGATGGCCTTGAT
GCTGGCAGCTTCAACAGGGCACTTTGGGTCTTTGCGGTTTCTGCGCGATG
ATGCTGTGGTGGACTTGTCCGATCGCCATAATCGCGGTTGGATGGCCTTC
ATGTTTGCTGCCGGAGAAGAGAACTACTTGGAGATAGGTCGCTACCTGTG
CGATGCTGGACCAGATTCGTGTGACTACGACGGTGACGGAGCCTCGCCTT
TGTATGCGGCTGCTCACGGAGGACACGCAGAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig4454:14717..15151+

>mRNA_H-paniculata_contig4454.11246.1 ID=mRNA_H-paniculata_contig4454.11246.1|Name=mRNA_H-paniculata_contig4454.11246.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig4454:14717..15151+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACCGCAGCTGTAAATAGGCACTTGGAGATTGTGTGTTTCCTGCGTGA
GGCTTGGGCGGACTTGTTTGATTGCAATAATGAGGGTTCGACAGTTTTGA
TCTTAGCAGGCACTTGGAAATTGTGCGATCCCTGTGCCGAGATGGAGCGG
GCTTTATTTGATCACACGAAGAACGGTTCGATGGCCTTGATGCTGGCAGC
TTCAACAGGGCACTTTGGGTCTTTGCGGTTTCTGCGCGATGATGCTGTGG
TGGACTTGTCCGATCGCCATAATCGCGGTTGGATGGCCTTCATGTTTGCT
GCCGGAGAAGAGAACTACTTGGAGATAGGTCGCTACCTGTGCGATGCTGG
ACCAGATTCGTGTGACTACGACGGTGACGGAGCCTCGCCTTTGTATGCGG
CTGCTCACGGAGGACACGCAGAAATAATGACCGCAGCTGTAAATAGGCAC
TTGGAGATTGTGTGTTTCCTGCGTGAGGCTTGGGCGGACTTGTTTGATTG
CAATAATGAGGGTTCGACAGTTTTGATCTTAGCAGGCACTTGGAAATTGT
GCGATCCCTGTGCCGAGATGGAGCGGGCTTTATTTGATCACACGAAGAAC
GGTTCGATGGCCTTGATGCTGGCAGCTTCAACAGGGCACTTTGGGTCTTT
GCGGTTTCTGCGCGATGATGCTGTGGTGGACTTGTCCGATCGCCATAATC
GCGGTTGGATGGCCTTCATGTTTGCTGCCGGAGAAGAGAACTACTTGGAG
ATAGGTCGCTACCTGTGCGATGCTGGACCAGATTCGTGTGACTACGACGG
TGACGGAGCCTCGCCTTTGTATGCGGCTGCTCACGGAGGACACGCAGAAA
TA
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