prot_H-paniculata_contig4453.11243.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4453.11243.1
Unique Nameprot_H-paniculata_contig4453.11243.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length872
Homology
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BLAST of mRNA_H-paniculata_contig4453.11243.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 5.220e-65
Identity = 366/831 (44.04%), Postives = 434/831 (52.23%), Query Frame = 0 
Query:   77 PRLDNVVACMKALGKEGKWREVMAALRELQQDAE-----EDSLLCPNLAVFNAAMXXXXXXXXXXXXXXXXEEMRAAGVSPDVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSLSSRDGGGGG---EARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPMAVSFRHALSAVSESCC---------EQDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAANAGEVGAALELIDRMEASNCYRNAVSYNQVIAACGRRRDWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREGGGVRPNTVIYNTLLGMCKGNPVRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAASVAAATPVNHPNSTAGSREPAGAPARRDGVEDSRRSRSETANAKVRPRAGTMSWGQDHEELMRTALALLDEMIEAGGRGRERWDHREGCAPDKLSFELAMQACVNAGHPEEALRVFRELRRWSRG------------------GGTAAAGIQLGLASYRLGLTAASAAGDGSAAAVFLGDMESAGIAGDESCYQLAATAFGRSGLWRQGLRLTQMAAADGVVLSPSTLTSVIGACAKGKRWREALDVLQTARPLLRRSQAVRPSAGTDMHPDTTTTVLKSGPVENDQGIKPETCLEAASRTGLWIGTKEKENGEGQENSSSSFLSSSSTTRMTCEGWGGADGSSDGSPGKSGGRVDAAYMLTMVACRAAGRYAEALSVVGMFEADGVRGDEMLYRVALKCCAKAGAAVAMGEVAG 872
            PR+ + +A MKALGKEGKWRE +A L +L++DA      + S L PNLAV+N   XXXXXXXXXXXXXXXXEEMR+AGV PDV  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXX     +L   +        EA+P                                L+P  +SFR+AL+A + S           E+D                                 AA AG+VGAAL+L+D ME    +R AV                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     GVRPNTV+YNTLL +C+G P+RG           XXXXXXXXXXXXXXXXX                  VN      G             + D R  R    N    P  GT+   +  +EL+ TA+ALL EM   G            CAPDK+SFEL MQACVNAG PE AL+VFR + R + G                  G   A  ++   A++RLGLTAA+ AGDG AAAV L +M  AGIA DES + LAATAFGR+GLWRQG+R+  +AA  G+ L+P+TLTS++GACAK  RWREAL +LQ  RP+L++                    L S P+    G+                                                        G+  +  G V AAY L MVACR +GR++E L V+ M E DG  GDE  +RVALKCCAKAG     G+ +G
Sbjct:  199 PRVADDIAAMKALGKEGKWREAVAVLSQLKEDASAASNGDGSDLAPNLAVYNXXXXXXXXXXXXXXXXXXXEEMRSAGVQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGCSCGPXXXXXXXXXXGEVERALRLLEEMAADPRPEAQPEALSYTLVLKACGREGRWETALQLLTEMQAKGLEPTVLSFRYALTACASSSSSRGVSGGSGEEDFAGVWERCRSLMDAMGRLGLEPDRLCYKQAVDAAAKAGDVGAALDLMDGMENCEGFRGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRPNTVVYNTLLALCRGKPLRG-------VRGGXXXXXXXXXXXXXXXXXDGTGPNLNGYGGXGGLEEVNGHGVAVG-------------MPDGRAIR----NGVSVPGGGTVGSRERPDELVGTAVALLHEMTVGGSE----------CAPDKMSFELVMQACVNAGRPESALKVFRAMARVAAGXXXXXXXXXXXXXXXXXXGRGRAVEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQG-------------------LSSLPLSTGAGVVA------------------------------------------------------GNERRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVGDEAFFRVALKCCAKAGGVGERGDCSG 922
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4453.11243.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEE2_ECTSI5.220e-6544.04Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 141..201
e-value: 1.9E-10
score: 40.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 575..596
e-value: 0.042
score: 14.1
coord: 684..705
e-value: 0.16
score: 12.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 348..382
e-value: 6.6E-6
score: 24.0
coord: 191..220
e-value: 5.1E-4
score: 18.0
coord: 238..268
e-value: 0.0017
score: 16.4
coord: 121..154
e-value: 3.9E-5
score: 21.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 346..380
score: 10.797
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 812..846
score: 5.283
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 311..345
score: 6.95
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 567..597
score: 8.528
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 10.49
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..152
score: 11.049
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 9.931
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 381..415
score: 9.482
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 153..187
score: 10.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 646..680
score: 6.533
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 681..711
score: 6.829
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 80..227
e-value: 3.0E-31
score: 110.9
coord: 237..446
e-value: 3.5E-41
score: 143.5
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 237..419
e-value: 1.3E-10
score: 41.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 540..706
coord: 291..427
coord: 232..354
coord: 81..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4453contigH-paniculata_contig4453:811..13614 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4453.11243.1mRNA_H-paniculata_contig4453.11243.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4453 811..13614 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4453.11243.1 ID=prot_H-paniculata_contig4453.11243.1|Name=mRNA_H-paniculata_contig4453.11243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=872bp
SGEGSNRLPAVAVQHQPAELNCAPQLNGHAMTGDAAASSSNHTPLPTPSP
RAPAPHQQVSPCGAPVREPSHIVPRSPRLDNVVACMKALGKEGKWREVMA
ALRELQQDAEEDSLLCPNLAVFNAAMGAVSKSARWEEALGLLEEMRAAGV
SPDVMSFTSVVAAGSRSGKVAQAVGILDQMRQEGVHPNAATYNAAIMGCA
GGGEWRRALDLLEKMRADSLSSRDGGGGGEARPEALSYTLTIKAAARDGQ
WRTALELLEQMQADGLQPMAVSFRHALSAVSESCCEQDRDESWRRCMSLL
EQMRVLSLDPDAGCFHHAIKTAANAGEVGAALELIDRMEASNCYRNAVSY
NQVIAACGRRRDWQRALSTLGRIRRAGITPDAYSFASAMSACARGGEPRQ
AFRLLEELKREGGGVRPNTVIYNTLLGMCKGNPVRGGGGGDHAQGNEGSS
ATTTLRQQYPHHDGFGGGARGRAAASVAAATPVNHPNSTAGSREPAGAPA
RRDGVEDSRRSRSETANAKVRPRAGTMSWGQDHEELMRTALALLDEMIEA
GGRGRERWDHREGCAPDKLSFELAMQACVNAGHPEEALRVFRELRRWSRG
GGTAAAGIQLGLASYRLGLTAASAAGDGSAAAVFLGDMESAGIAGDESCY
QLAATAFGRSGLWRQGLRLTQMAAADGVVLSPSTLTSVIGACAKGKRWRE
ALDVLQTARPLLRRSQAVRPSAGTDMHPDTTTTVLKSGPVENDQGIKPET
CLEAASRTGLWIGTKEKENGEGQENSSSSFLSSSSTTRMTCEGWGGADGS
SDGSPGKSGGRVDAAYMLTMVACRAAGRYAEALSVVGMFEADGVRGDEML
YRVALKCCAKAGAAVAMGEVAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long