mRNA_H-paniculata_contig4453.11243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4453.11243.1 vs. uniprot
Match: D8LEE2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE2_ECTSI) HSP 1 Score: 249 bits (635), Expect = 5.220e-65 Identity = 366/831 (44.04%), Postives = 434/831 (52.23%), Query Frame = 1
Query: 229 PRLDNVVACMKALGKEGKWREVMAALRELQQDAE-----EDSLLCPNLAVFNAAMXXXXXXXXXXXXXXXXEEMRAAGVSPDVMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADSLSSRDGGGGG---EARPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQPMAVSFRHALSAVSESCC---------EQDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTAANAGEVGAALELIDRMEASNCYRNAVSYNQVIAACGRRRDWQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKREGGGVRPNTVIYNTLLGMCKGNPVRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAASVAAATPVNHPNSTAGSREPAGAPARRDGVEDSRRSRSETANAKVRPRAGTMSWGQDHEELMRTALALLDEMIEAGGRGRERWDHREGCAPDKLSFELAMQACVNAGHPEEALRVFRELRRWSRG------------------GGTAAAGIQLGLASYRLGLTAASAAGDGSAAAVFLGDMESAGIAGDESCYQLAATAFGRSGLWRQGLRLTQMAAADGVVLSPSTLTSVIGACAKGKRWREALDVLQTARPLLRRSQAVRPSAGTDMHPDTTTTVLKSGPVENDQGIKPETCLEAASRTGLWIGTKEKENGEGQENSSSSFLSSSSTTRMTCEGWGGADGSSDGSPGKSGGRVDAAYMLTMVACRAAGRYAEALSVVGMFEADGVRGDEMLYRVALKCCAKAGAAVAMGEVAG 2616
PR+ + +A MKALGKEGKWRE +A L +L++DA + S L PNLAV+N XXXXXXXXXXXXXXXXEEMR+AGV PDV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX +L + EA+P L+P +SFR+AL+A + S E+D AA AG+VGAAL+L+D ME +R AV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVRPNTV+YNTLL +C+G P+RG XXXXXXXXXXXXXXXXX VN G + D R R N P GT+ + +EL+ TA+ALL EM G CAPDK+SFEL MQACVNAG PE AL+VFR + R + G G A ++ A++RLGLTAA+ AGDG AAAV L +M AGIA DES + LAATAFGR+GLWRQG+R+ +AA G+ L+P+TLTS++GACAK RWREAL +LQ RP+L++ L S P+ G+ G+ + G V AAY L MVACR +GR++E L V+ M E DG GDE +RVALKCCAKAG G+ +G
Sbjct: 199 PRVADDIAAMKALGKEGKWREAVAVLSQLKEDASAASNGDGSDLAPNLAVYNXXXXXXXXXXXXXXXXXXXEEMRSAGVQPDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITGCSCGPXXXXXXXXXXGEVERALRLLEEMAADPRPEAQPEALSYTLVLKACGREGRWETALQLLTEMQAKGLEPTVLSFRYALTACASSSSSRGVSGGSGEEDFAGVWERCRSLMDAMGRLGLEPDRLCYKQAVDAAAKAGDVGAALDLMDGMENCEGFRGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRPNTVVYNTLLALCRGKPLRG-------VRGGXXXXXXXXXXXXXXXXXDGTGPNLNGYGGXGGLEEVNGHGVAVG-------------MPDGRAIR----NGVSVPGGGTVGSRERPDELVGTAVALLHEMTVGGSE----------CAPDKMSFELVMQACVNAGRPESALKVFRAMARVAAGXXXXXXXXXXXXXXXXXXGRGRAVEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGTRPVLQQG-------------------LSSLPLSTGAGVVA------------------------------------------------------GNERRGEGNVVAAYTLAMVACRRSGRHSEGLRVLEMLEEDGGVGDEAFFRVALKCCAKAGGVGERGDCSG 922 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4453.11243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4453.11243.1 >prot_H-paniculata_contig4453.11243.1 ID=prot_H-paniculata_contig4453.11243.1|Name=mRNA_H-paniculata_contig4453.11243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=872bp SGEGSNRLPAVAVQHQPAELNCAPQLNGHAMTGDAAASSSNHTPLPTPSPback to top mRNA from alignment at H-paniculata_contig4453:811..13614- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4453.11243.1 ID=mRNA_H-paniculata_contig4453.11243.1|Name=mRNA_H-paniculata_contig4453.11243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12804bp|location=Sequence derived from alignment at H-paniculata_contig4453:811..13614- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4453:811..13614- >mRNA_H-paniculata_contig4453.11243.1 ID=mRNA_H-paniculata_contig4453.11243.1|Name=mRNA_H-paniculata_contig4453.11243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5232bp|location=Sequence derived from alignment at H-paniculata_contig4453:811..13614- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |