mRNA_H-paniculata_contig4453.11244.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4453.11244.1
Unique NamemRNA_H-paniculata_contig4453.11244.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4453.11244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4453contigH-paniculata_contig4453:13635..14429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size795
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4453.11244.1prot_H-paniculata_contig4453.11244.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4453 13727..14167 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.60806-UTR-H-paniculata_contig4453:13634..137261622930340.60806-UTR-H-paniculata_contig4453:13634..13726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4453 13635..13726 +
1691481248.7286515-UTR-H-paniculata_contig4453:13634..137261691481248.7286515-UTR-H-paniculata_contig4453:13634..13726Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4453 13635..13726 +
1622930340.6375873-UTR-H-paniculata_contig4453:14167..144291622930340.6375873-UTR-H-paniculata_contig4453:14167..14429Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4453 14168..14429 +
1691481248.7503183-UTR-H-paniculata_contig4453:14167..144291691481248.7503183-UTR-H-paniculata_contig4453:14167..14429Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4453 14168..14429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.623637-CDS-H-paniculata_contig4453:13726..141671622930340.623637-CDS-H-paniculata_contig4453:13726..14167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4453 13727..14167 +
1691481248.7399487-CDS-H-paniculata_contig4453:13726..141671691481248.7399487-CDS-H-paniculata_contig4453:13726..14167Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4453 13727..14167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4453.11244.1

>prot_H-paniculata_contig4453.11244.1 ID=prot_H-paniculata_contig4453.11244.1|Name=mRNA_H-paniculata_contig4453.11244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MQRTRIPPLAWCEGAKVTRRLPPARPTKDGELLLLLLLLLLPRSAYNCRS
RMTAGRCREARDRLYDLRAARAGTNVVVGVDKAWVRPPAAADRGSTDCCW
YCFPMAAASSIDEAQAQLLVSRLLEACHDAVRFSTGSRSLLMFLSC*
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mRNA from alignment at H-paniculata_contig4453:13635..14429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4453.11244.1 ID=mRNA_H-paniculata_contig4453.11244.1|Name=mRNA_H-paniculata_contig4453.11244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=795bp|location=Sequence derived from alignment at H-paniculata_contig4453:13635..14429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCACAATGCTCTGTCGTTCCGCTACCCCCTGCCGCCGCCCCCGCTGTG
CTCTGGGTGCTGCCTGCATTCGGTTGAAAAGCTCGTTGGCTCATGCAGCG
GACAAGAATTCCCCCACTCGCATGGTGTGAGGGAGCAAAGGTAACGAGGC
GGCTCCCGCCCGCTCGGCCAACAAAAGATGGAGAGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTTCCACGTAGTGCGTACAATTGCCGCTCTAGGATGAC
AGCGGGTCGCTGCAGGGAGGCCCGTGATCGCCTGTACGACTTGCGAGCAG
CACGCGCTGGAACGAATGTCGTGGTGGGTGTAGACAAGGCTTGGGTGAGG
CCCCCCGCCGCCGCTGACAGGGGAAGTACAGACTGTTGTTGGTACTGCTT
CCCCATGGCGGCGGCCAGTAGCATCGACGAGGCGCAGGCGCAACTCCTTG
TGAGTCGCCTGCTGGAAGCTTGCCATGATGCCGTCCGATTCTCTACTGGG
AGTAGGTCGTTGTTGATGTTTCTGTCATGTTGATCCTTGTTGTAGTAGTC
CCTCCTGCTCCTTTTCCGCCGTTCTTGTCTGCTGCTTCTGCTGCTCTTCC
TACTGAGACCAGCACCAGTGCCCAGGCGATTGCGCGACATTCCCTCTCTC
TCGCATGAGGGCATGTGGATGGGGAGGCGTCACGAGAGAGGGGGCACCTC
GGCCAACACAACCCAGCAGCTAGGTACGGCAGCGCCTCACTATTTACCGT
CCTTCGGTCCTTTGTAGACACGTGTTCGTATGGTCATTAGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4453:13635..14429+

>mRNA_H-paniculata_contig4453.11244.1 ID=mRNA_H-paniculata_contig4453.11244.1|Name=mRNA_H-paniculata_contig4453.11244.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig4453:13635..14429+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGGACAAGAATTCCCCCACTCGCATGGTGTGAGGGAGCAAAGGT
AACGAGGCGGCTCCCGCCCGCTCGGCCAACAAAAGATGGAGAGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTTCCACGTAGTGCGTACAATTGCCGCTCT
AGGATGACAGCGGGTCGCTGCAGGGAGGCCCGTGATCGCCTGTACGACTT
GCGAGCAGCACGCGCTGGAACGAATGTCGTGGTGGGTGTAGACAAGGCTT
GGGTGAGGCCCCCCGCCGCCGCTGACAGGGGAAGTACAGACTGTTGTTGG
TACTGCTTCCCCATGGCGGCGGCCAGTAGCATCGACGAGGCGCAGGCGCA
ACTCCTTGTGAGTCGCCTGCTGGAAGCTTGCCATGATGCCGTCCGATTCT
CTACTGGGAGTAGGTCGTTGTTGATGTTTCTGTCATGTTGAATGCAGCGG
ACAAGAATTCCCCCACTCGCATGGTGTGAGGGAGCAAAGGTAACGAGGCG
GCTCCCGCCCGCTCGGCCAACAAAAGATGGAGAGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTTCCACGTAGTGCGTACAATTGCCGCTCTAGGATGACA
GCGGGTCGCTGCAGGGAGGCCCGTGATCGCCTGTACGACTTGCGAGCAGC
ACGCGCTGGAACGAATGTCGTGGTGGGTGTAGACAAGGCTTGGGTGAGGC
CCCCCGCCGCCGCTGACAGGGGAAGTACAGACTGTTGTTGGTACTGCTTC
CCCATGGCGGCGGCCAGTAGCATCGACGAGGCGCAGGCGCAACTCCTTGT
GAGTCGCCTGCTGGAAGCTTGCCATGATGCCGTCCGATTCTCTACTGGGA
GTAGGTCGTTGTTGATGTTTCTGTCATGTTGA
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