mRNA_H-paniculata_contig4452.11241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4452.11241.1
Unique NamemRNA_H-paniculata_contig4452.11241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4452.11241.1 vs. uniprot
Match: A0A6H5K6P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.120e-18
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    4 DRCVSASGSE--EEYFYCTDRYKWEWSQEVSQLPYQASDSLCITMDSDVVDGLDNSE 168
            D CVSA+  +  +E+F+CTDRY WEWSQ+  QLP QASDSLC+T+DS VVDGLD +E
Sbjct:   34 DNCVSATSGDNIDEFFFCTDRYSWEWSQDAEQLPVQASDSLCLTLDSSVVDGLDQTE 90
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BLAST of mRNA_H-paniculata_contig4452.11241.1 vs. uniprot
Match: D7G7R5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7R5_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   67 WEWSQEVSQLPYQASDSLCITMDSDVVDGLDNSE 168
            WEWSQ+  QLP QASDSLC+TMDS VVDGLD +E
Sbjct:    3 WEWSQDAEQLPVQASDSLCLTMDSSVVDGLDQTE 36
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4452.11241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6P9_9PHAE1.120e-1864.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7R5_ECTSI1.230e-876.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4452contigH-paniculata_contig4452:13197..13923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog2880.D7G7R5
KEGG koko:K10442,ko:K10443,ko:K10447
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Exons2
Model size187
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.4841945-CDS-H-paniculata_contig4452:13196..132321622930340.4841945-CDS-H-paniculata_contig4452:13196..13232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4452 13197..13232 +
1691481248.683792-CDS-H-paniculata_contig4452:13196..132321691481248.683792-CDS-H-paniculata_contig4452:13196..13232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4452 13197..13232 +
1622930340.4979634-CDS-H-paniculata_contig4452:13773..139231622930340.4979634-CDS-H-paniculata_contig4452:13773..13923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4452 13774..13923 +
1691481248.6982758-CDS-H-paniculata_contig4452:13773..139231691481248.6982758-CDS-H-paniculata_contig4452:13773..13923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4452 13774..13923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4452.11241.1prot_H-paniculata_contig4452.11241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4452 13197..13923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4452.11241.1

>prot_H-paniculata_contig4452.11241.1 ID=prot_H-paniculata_contig4452.11241.1|Name=mRNA_H-paniculata_contig4452.11241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
NDRCVSASGSEEEYFYCTDRYKWEWSQEVSQLPYQASDSLCITMDSDVVD
GLDNSECAKQI*
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mRNA from alignment at H-paniculata_contig4452:13197..13923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4452.11241.1 ID=mRNA_H-paniculata_contig4452.11241.1|Name=mRNA_H-paniculata_contig4452.11241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=727bp|location=Sequence derived from alignment at H-paniculata_contig4452:13197..13923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGACAGATGCGTGTCAGCTAGTGGGAGCGAGGAGGTGGGCGATATTGT
TAGGTGTATGTGTAGCATATCATGAAAGGTGTCCATTAGCCAGTATTCAA
AAACCGTCCGGAGCAGAGAAGCTGTTCTCATAGACGAACAAATCAACAAC
GCACATTTTCCTTTGTGTCGAGTGAAAGCGTCCCAACCGTCAGAACTTAC
TATGTTGGTGCAGTAAGTGTTTACCCACATCATTTACATCTCACAGCTTC
AAAGACAATCGCGCTCCTCTGGAGCTCTCCGCCACGTTATTTGCGATCCA
CTACTGTACAAGTGGCTGGATATGTTATATTGAAGTAGCTCACTGCGAGA
GTATAACGTCGAGACCAACCCGTGTTTTTGATGGCCACAAGAGCAGTTAG
TTACGAGGGAAGAGCAGATACGAAGATGTCTTACGTACGTATCTGGAAGC
TACCATCGCCTGCAGGATATCGACCTATTACTGTAAAACTTGAGATTTAA
AACGTTTGCACTTCGAATCCATGAACAAGTATGGTGCACTGGGGTCGTCT
CTGTCCACGTCTCTTTGCCGACACCAGGAGTACTTCTACTGCACCGACCG
GTACAAATGGGAATGGTCTCAAGAAGTCTCTCAACTACCATATCAAGCCA
GCGACTCCCTGTGCATCACCATGGACAGCGATGTAGTTGACGGCTTGGAC
AACAGTGAGTGTGCGAAGCAAATATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig4452:13197..13923+

>mRNA_H-paniculata_contig4452.11241.1 ID=mRNA_H-paniculata_contig4452.11241.1|Name=mRNA_H-paniculata_contig4452.11241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig4452:13197..13923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGACAGATGCGTGTCAGCTAGTGGGAGCGAGGAGAACGACAGATGCGT
GTCAGCTAGTGGGAGCGAGGAGGAGTACTTCTACTGCACCGACCGGTACA
AATGGGAATGGTCTCAAGAAGTCTCTCAACTACCATATCAAGCCAGCGAC
TCCCTGTGCATCACCATGGACAGCGATGTAGTTGACGGCTTGGACAACAG
TGAGTGTGCGAAGCAAATATGAGAGTACTTCTACTGCACCGACCGGTACA
AATGGGAATGGTCTCAAGAAGTCTCTCAACTACCATATCAAGCCAGCGAC
TCCCTGTGCATCACCATGGACAGCGATGTAGTTGACGGCTTGGACAACAG
TGAGTGTGCGAAGCAAATATGA
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