mRNA_H-paniculata_contig44515.11239.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44515.11239.1
Unique NamemRNA_H-paniculata_contig44515.11239.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: D8LAT3_ECTSI (Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAT3_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 6.270e-29
Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 ITALHFGLSREEFESTTLGAAAKTSEKLVERSAVEGXXXXXXXXXXXELIVPYCTVGYRSGQYAKKLQDLGYPSVRNSEGVVLWTHDVGSGLVMRTA 291
            ++ L   L+REEFE+++LG AA+T +K  ERS  EG            ++ PYCTVG+RSGQYAKKL DLGYPSVRNSEGVVLWTHDVG+GLV R A
Sbjct:   79 VSMLRGALTREEFENSSLGEAARTGKKFRERSG-EGEEAWG-------VVAPYCTVGFRSGQYAKKLVDLGYPSVRNSEGVVLWTHDVGNGLVARAA 167
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A836CAM6_9STRA (Bile Acid:Na+ symporter family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.810e-16
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:  148 IVPYCTVGYRSGQYAKKLQDLGYPSVRNSEGVVLWTHDVGSGLVMR 285
            +VPYCT+GYRSG YA+KL+ LGY  VRN EG+V+WTHD+GSGLV R
Sbjct:   84 VVPYCTIGYRSGAYARKLKTLGYRHVRNGEGIVMWTHDIGSGLVDR 129
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A812J6E8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J6E8_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 5.900e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVGSGLV 279
            L+VPYCTVGYRSG YAK+L D  G  +VRN EGV++WT D GSGLV
Sbjct:   32 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLV 76
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A813CHA3_9DINO (Hypothetical protein (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813CHA3_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 3.170e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVGSGLV 279
            L+VPYCTVGYRSG YAK+L D  G  +VRN EGV++WT D GSGLV
Sbjct:   86 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLV 130
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A812UEF0_9DINO (PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812UEF0_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 6.310e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVGSGLV 279
            L+VPYCTVGYRSG YAK+L D  G  +VRN EGV++WT D GSGLV
Sbjct:  351 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLV 395
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A1Q9F5B3_SYMMI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9F5B3_SYMMI)

HSP 1 Score: 64.3 bits (155), Expect = 6.480e-10
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVGSGLV 279
            L+VPYCTVGYRSG YAK+L D  G  +VRN EGV++WT D GSGLV
Sbjct:  439 LVVPYCTVGYRSGVYAKELMDKHGLQNVRNGEGVIMWTFD-GSGLV 483
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A812UW94_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UW94_9DINO)

HSP 1 Score: 62.4 bits (150), Expect = 3.120e-9
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVGSGLV 279
            L+VPYCTVGYRSG YAK+L +  G  +VRN EGV++WT D GSGLV
Sbjct:  668 LVVPYCTVGYRSGVYAKELMNKHGLQNVRNGEGVIMWTFD-GSGLV 712
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A813HB18_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HB18_POLGL)

HSP 1 Score: 58.2 bits (139), Expect = 9.320e-8
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKL-QDLGYPSVRNSEGVVLWTHDVGSGLV 279
            LIVPYCTVGYRSG Y ++L  + G+ +VRN EGV++WT D GS LV
Sbjct:  294 LIVPYCTVGYRSGLYCRELVNEHGFSNVRNGEGVIMWTFD-GSVLV 338
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BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A7S2QAT3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QAT3_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 9.310e-7
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  145 LIVPYCTVGYRSGQYAKKLQDL-GYPSVRNSEGVVLWTHDVG 267
            ++VPYCTVGYRSG Y ++L    G  +V+N EGV++WT D G
Sbjct:   51 VVVPYCTVGYRSGLYCRELMSSHGVNNVQNGEGVIMWTFDGG 92
[Close]
BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Match: A0A0G4H6V2_9ALVE (Rhodanese domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H6V2_9ALVE)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-6
Identity = 28/86 (32.56%), Postives = 41/86 (47.67%), Query Frame = 1 
Query:    1 ITALHFGLSREEFESTTLGAAAKTSEKLVERSAVEGXXXXXXXXXXXELIVPYCTVGYRSGQYAKKLQDLGYPSVRNSEGVVLWTH 258
            ++ +    S++EFE    G   ++  K     A E              +VPYCT+GYRSG   + L+  G+   RN EGV+LW H
Sbjct:  136 VSVIPGSFSKDEFEREVAGLTEESQLKTTTEDAKEPFDPSAVR------VVPYCTIGYRSGLCVRDLKVRGFTQSRNGEGVILWAH 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44515.11239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LAT3_ECTSI6.270e-2960.82Bile Acid:Na+ symporter family n=1 Tax=Ectocarpus ... [more]
A0A836CAM6_9STRA1.810e-1671.74Bile Acid:Na+ symporter family n=1 Tax=Tribonema m... [more]
A0A812J6E8_9DINO5.900e-1169.57Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A813CHA3_9DINO3.170e-1069.57Hypothetical protein (Fragment) n=2 Tax=Symbiodini... [more]
A0A812UEF0_9DINO6.310e-1069.57PPR4 protein (Fragment) n=1 Tax=Symbiodinium sp. C... [more]
A0A1Q9F5B3_SYMMI6.480e-1069.57Pentatricopeptide repeat-containing protein, chlor... [more]
A0A812UW94_9DINO3.120e-967.39Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813HB18_POLGL9.320e-863.04Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7S2QAT3_9DINO9.310e-754.76Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A0G4H6V2_9ALVE1.310e-632.56Rhodanese domain-containing protein n=1 Tax=Chrome... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44515contigH-paniculata_contig44515:366..1474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.9e-23
Seed eggNOG ortholog2880.D8LAT3
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3Y9@1,2SAXP@2759
Ec32 ortholog descriptionRhodanese-like domain
Ec32 orthologEc-27_006450.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.239107-CDS-H-paniculata_contig44515:365..4441622930340.239107-CDS-H-paniculata_contig44515:365..444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44515 366..444 -
1691481248.5509784-CDS-H-paniculata_contig44515:365..4441691481248.5509784-CDS-H-paniculata_contig44515:365..444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44515 366..444 -
1622930340.2568436-CDS-H-paniculata_contig44515:1262..14741622930340.2568436-CDS-H-paniculata_contig44515:1262..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44515 1263..1474 -
1691481248.570724-CDS-H-paniculata_contig44515:1262..14741691481248.570724-CDS-H-paniculata_contig44515:1262..1474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44515 1263..1474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44515.11239.1prot_H-paniculata_contig44515.11239.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44515 366..1474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44515.11239.1

>prot_H-paniculata_contig44515.11239.1 ID=prot_H-paniculata_contig44515.11239.1|Name=mRNA_H-paniculata_contig44515.11239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
ITALHFGLSREEFESTTLGAAAKTSEKLVERSAVEGGGGGGGGGGGEELI
VPYCTVGYRSGQYAKKLQDLGYPSVRNSEGVVLWTHDVGSGLVMRTA
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mRNA from alignment at H-paniculata_contig44515:366..1474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44515.11239.1 ID=mRNA_H-paniculata_contig44515.11239.1|Name=mRNA_H-paniculata_contig44515.11239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1109bp|location=Sequence derived from alignment at H-paniculata_contig44515:366..1474- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACGGCTCTCCATTTCGGGTTATCCAGGGAAGAATTCGAGAGTACAAC
GCTGGGGGCGGCCGCGAAGACTTCGGAAAAGTTGGTGGAACGTTCCGCAG
TTGAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAATTGATA
GTGCCGTATTGCACTGTCGGCTATCGGTCGGGGCAGTACGCGAAGAAACT
ACAGGATTTAGGGTGAGAACGCGCGTTCGCTCTTCCCTACAGCCAATCGC
TACCAGGTATTGATTGCTACGCGAAGGTGGTGATGATCGCCATTTCACAA
CATTTCTTCAAGTTTATACTCGAAAAATAAATAAATAATAAAACGCGCGA
AACAAAATCTTCACGGAGAGTACGCCTGCTATACTTGCAAGTGTGTTAGG
CGGTTCTCCCATCTGGATCCTTTGATTTATAGCCTGAGTATGCGTGTGAT
ACTGACTGTACTGGCGTAACGGTTGCGAATGTGTTCTAGGAACATTTCTC
GGAGTTTTGTATTGTTCTGATTCTTATTTCTTGTCCCGAATCCGGTTCGT
GTGTAGGTAGAATCTGGTTCGGATCCGTTTCTTGTTACGGATTGGAAGAG
AGACATGAGGGAGCCACTGCATGCCCGCACCTCTGTCACCCCCTCTGCCT
ACATGATAATAAAAGCTTCACAACTCTTGTCTTTACTCTCGCGCTACAAG
CCCAATTCCGTGGAAGCCTCGAGATATCAAACATAGGTCCCGAGCCACAG
TCCACCTCGACCAATTGCTCGACAAAAAGCGAACTCATGTTCGAAGTTCA
GAAGTTTTGCGAGTTTAACGGAATCTGACGGGTTGTGAAAAGTGAGTCGG
TTTGTATCGAGATGTTCGGGCAGGTGTACTTGGGTCCGGGATCTGCAGCT
CATAATGGATTTACCCAGGATCGAATCGAAGTTTTTCCGAAGCGGTGTTT
TTTTATCGCAAGCACCCTTGTGTTCGGAAATTGGCTATCATCCTTACATA
TCGTCACGATCCCGCGATATGTTGACGTAGGTATCCATCGGTGCGCAACA
GCGAAGGGGTGGTGCTGTGGACGCACGATGTCGGGAGCGGGCTAGTGATG
AGAACAGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig44515:366..1474-

>mRNA_H-paniculata_contig44515.11239.1 ID=mRNA_H-paniculata_contig44515.11239.1|Name=mRNA_H-paniculata_contig44515.11239.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig44515:366..1474- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAACGGCTCTCCATTTCGGGTTATCCAGGGAAGAATTCGAGAGTACAAC
GCTGGGGGCGGCCGCGAAGACTTCGGAAAAGTTGGTGGAACGTTCCGCAG
TTGAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAATTGATA
GTGCCGTATTGCACTGTCGGCTATCGGTCGGGGCAGTACGCGAAGAAACT
ACAGGATTTAGGATAACGGCTCTCCATTTCGGGTTATCCAGGGAAGAATT
CGAGAGTACAACGCTGGGGGCGGCCGCGAAGACTTCGGAAAAGTTGGTGG
AACGTTCCGCAGTTGAGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GAGGAATTGATAGTGCCGTATTGCACTGTCGGCTATCGGTCGGGGCAGTA
CGCGAAGAAACTACAGGATTTAGGGTATCCATCGGTGCGCAACAGCGAAG
GGGTGGTGCTGTGGACGCACGATGTCGGGAGCGGGCTAGTGATGAGAACA
GCAGTATCCATCGGTGCGCAACAGCGAAGGGGTGGTGCTGTGGACGCACG
ATGTCGGGAGCGGGCTAGTGATGAGAACAGCA
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