mRNA_H-paniculata_contig44511.11238.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44511.11238.1
Unique NamemRNA_H-paniculata_contig44511.11238.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44511.11238.1 vs. uniprot
Match: A0A6H5LE02_9PHAE (DUF3668 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE02_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.660e-7
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = -1 
Query:  362 GLGVGQLESVSGDRGGEEQLQRLVEWREELLETGM*TLQNPIVSELSRRIASARATTAGRGAGRPLRREE 571
            G G      + GD  G  +++RL+EWR+ELL TGM T QNPIVSEL+RRI+ A  +  GRG+G  L+REE
Sbjct: 1000 GGGASASGPLGGDVDGSTEMRRLIEWRDELLATGMYTPQNPIVSELNRRISLAGGSVGGRGSGL-LQREE 1068
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BLAST of mRNA_H-paniculata_contig44511.11238.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 9.850e-7
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = -1 
Query:  362 GLGVGQLESVSGDRGGEEQLQRLVEWREELLETGM*TLQNPIVSELSRRIASARATTAGRGAGRPLRREE 571
            G G      + GD  G  +++RL+EWR+ELL TGM T QNPIVSEL+RRI+ A  +  GRG+   L+REE
Sbjct: 1358 GGGASASGPLGGDVDGSTEMRRLIEWRDELLATGMYTPQNPIVSELNRRISLAGGSVGGRGSSL-LQREE 1426
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44511.11238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LE02_9PHAE1.660e-752.86DUF3668 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FXH9_ECTSI9.850e-751.43Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44511contigH-paniculata_contig44511:366..1347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size982
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44511.11238.1prot_H-paniculata_contig44511.11238.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44511 653..1285 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.1456778-UTR-H-paniculata_contig44511:365..6521622930340.1456778-UTR-H-paniculata_contig44511:365..652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44511 366..652 +
1691481248.5153763-UTR-H-paniculata_contig44511:365..6521691481248.5153763-UTR-H-paniculata_contig44511:365..652Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44511 366..652 +
1622930340.1931708-UTR-H-paniculata_contig44511:1285..13471622930340.1931708-UTR-H-paniculata_contig44511:1285..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44511 1286..1347 +
1691481248.5348637-UTR-H-paniculata_contig44511:1285..13471691481248.5348637-UTR-H-paniculata_contig44511:1285..1347Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44511 1286..1347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930340.1649015-CDS-H-paniculata_contig44511:652..12851622930340.1649015-CDS-H-paniculata_contig44511:652..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44511 653..1285 +
1691481248.525588-CDS-H-paniculata_contig44511:652..12851691481248.525588-CDS-H-paniculata_contig44511:652..1285Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44511 653..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44511.11238.1

>prot_H-paniculata_contig44511.11238.1 ID=prot_H-paniculata_contig44511.11238.1|Name=mRNA_H-paniculata_contig44511.11238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MNLHNNENKKPGQRALKISSTIKHHSSLRNGRPAPRPAVVALALAIRRLS
SLTIGFCKVYIPVSNSSSLHSTNLCSCSSPPRSPLTLSSCPTPKPSFSSP
SLVCRPPAVPSNTFFASETRWSPLSRCPRMSLPMTSIFFASPAADPREDC
WASGLALTPRSLLCKTLAGAGAGVGRGGGLGDGPSRSGNEFRTRDGGSPV
PKPSTPMCSW*
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mRNA from alignment at H-paniculata_contig44511:366..1347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44511.11238.1 ID=mRNA_H-paniculata_contig44511.11238.1|Name=mRNA_H-paniculata_contig44511.11238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=982bp|location=Sequence derived from alignment at H-paniculata_contig44511:366..1347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAACCGCAGAAGCTGCACACACTATTGTACAAAAGAACTACCTCTGCGGC
AATCAGTATTATTGACCCACACGCACGTCAAAGGATACTGCTCTCTTGTC
CACAGGTTGAAAAAACCGACGATATTAAAACTACTTAACATTCGACAGGA
AGTAAGGCTAAGAAAACGCACAAGACAAATCCCCACTTCTGCCCGAACGA
ACAACTGACATATGTATCATCTATCTGGTTCCTCGTGAATGACAGTCTGC
GACGTCCACAAAAACTAAATTCTGGGCAACGATTCTTATGAACCTCCACA
ACAACGAAAACAAAAAACCTGGCCAAAGAGCCCTCAAAATCTCCAGCACC
ATCAAGCACCACTCCTCTCTTCGCAACGGTCGCCCCGCCCCCCGACCCGC
CGTGGTCGCTCTTGCGCTTGCAATCCGCCGGCTGAGCTCGCTGACAATAG
GATTTTGCAAGGTCTACATACCCGTCTCCAACAGTTCCTCTCTCCACTCG
ACCAACCTCTGCAGCTGCTCCTCCCCTCCTCGGTCCCCACTTACGCTCTC
CAGCTGCCCCACACCCAAGCCATCGTTCTCTTCTCCCTCTCTTGTGTGCC
GCCCCCCTGCCGTGCCGTCGAATACCTTCTTCGCATCGGAGACTCGATGG
TCGCCCCTCTCCCGTTGCCCACGCATGTCGTTACCAATGACATCCATTTT
CTTCGCAAGCCCTGCTGCCGACCCTCGAGAAGATTGCTGGGCTTCTGGGC
TGGCGCTAACGCCGCGGTCCCTTCTGTGTAAAACGTTGGCCGGGGCTGGC
GCAGGGGTTGGACGCGGCGGGGGACTTGGTGATGGGCCGAGCAGGTCAGG
GAATGAGTTCCGGACCCGCGATGGAGGTAGCCCCGTACCGAAACCTTCGA
CGCCCATGTGCAGCTGGTGAGATTGAAAGCGAGGTGGAGTGGTATTGGTA
GTGGCGGCGGCTGCTGATGCGTGCGAGGCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig44511:366..1347+

>mRNA_H-paniculata_contig44511.11238.1 ID=mRNA_H-paniculata_contig44511.11238.1|Name=mRNA_H-paniculata_contig44511.11238.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig44511:366..1347+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACCTCCACAACAACGAAAACAAAAAACCTGGCCAAAGAGCCCTCAA
AATCTCCAGCACCATCAAGCACCACTCCTCTCTTCGCAACGGTCGCCCCG
CCCCCCGACCCGCCGTGGTCGCTCTTGCGCTTGCAATCCGCCGGCTGAGC
TCGCTGACAATAGGATTTTGCAAGGTCTACATACCCGTCTCCAACAGTTC
CTCTCTCCACTCGACCAACCTCTGCAGCTGCTCCTCCCCTCCTCGGTCCC
CACTTACGCTCTCCAGCTGCCCCACACCCAAGCCATCGTTCTCTTCTCCC
TCTCTTGTGTGCCGCCCCCCTGCCGTGCCGTCGAATACCTTCTTCGCATC
GGAGACTCGATGGTCGCCCCTCTCCCGTTGCCCACGCATGTCGTTACCAA
TGACATCCATTTTCTTCGCAAGCCCTGCTGCCGACCCTCGAGAAGATTGC
TGGGCTTCTGGGCTGGCGCTAACGCCGCGGTCCCTTCTGTGTAAAACGTT
GGCCGGGGCTGGCGCAGGGGTTGGACGCGGCGGGGGACTTGGTGATGGGC
CGAGCAGGTCAGGGAATGAGTTCCGGACCCGCGATGGAGGTAGCCCCGTA
CCGAAACCTTCGACGCCCATGTGCAGCTGGTGAATGAACCTCCACAACAA
CGAAAACAAAAAACCTGGCCAAAGAGCCCTCAAAATCTCCAGCACCATCA
AGCACCACTCCTCTCTTCGCAACGGTCGCCCCGCCCCCCGACCCGCCGTG
GTCGCTCTTGCGCTTGCAATCCGCCGGCTGAGCTCGCTGACAATAGGATT
TTGCAAGGTCTACATACCCGTCTCCAACAGTTCCTCTCTCCACTCGACCA
ACCTCTGCAGCTGCTCCTCCCCTCCTCGGTCCCCACTTACGCTCTCCAGC
TGCCCCACACCCAAGCCATCGTTCTCTTCTCCCTCTCTTGTGTGCCGCCC
CCCTGCCGTGCCGTCGAATACCTTCTTCGCATCGGAGACTCGATGGTCGC
CCCTCTCCCGTTGCCCACGCATGTCGTTACCAATGACATCCATTTTCTTC
GCAAGCCCTGCTGCCGACCCTCGAGAAGATTGCTGGGCTTCTGGGCTGGC
GCTAACGCCGCGGTCCCTTCTGTGTAAAACGTTGGCCGGGGCTGGCGCAG
GGGTTGGACGCGGCGGGGGACTTGGTGATGGGCCGAGCAGGTCAGGGAAT
GAGTTCCGGACCCGCGATGGAGGTAGCCCCGTACCGAAACCTTCGACGCC
CATGTGCAGCTGGTGA
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