mRNA_H-paniculata_contig445.11235.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig445.11235.1
Unique NamemRNA_H-paniculata_contig445.11235.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig445.11235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig445contigH-paniculata_contig445:19670..20288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size238
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig445.11235.1prot_H-paniculata_contig445.11235.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig445 19670..20269 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.5116615-CDS-H-paniculata_contig445:19669..198021622930339.5116615-CDS-H-paniculata_contig445:19669..19802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 19670..19802 -
1691481248.2231188-CDS-H-paniculata_contig445:19669..198021691481248.2231188-CDS-H-paniculata_contig445:19669..19802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 19670..19802 -
1622930339.5437315-CDS-H-paniculata_contig445:20183..202691622930339.5437315-CDS-H-paniculata_contig445:20183..20269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 20184..20269 -
1691481248.2320056-CDS-H-paniculata_contig445:20183..202691691481248.2320056-CDS-H-paniculata_contig445:20183..20269Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig445 20184..20269 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.5678222-UTR-H-paniculata_contig445:20269..202881622930339.5678222-UTR-H-paniculata_contig445:20269..20288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig445 20270..20288 -
1691481248.2407026-UTR-H-paniculata_contig445:20269..202881691481248.2407026-UTR-H-paniculata_contig445:20269..20288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig445 20270..20288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig445.11235.1

>prot_H-paniculata_contig445.11235.1 ID=prot_H-paniculata_contig445.11235.1|Name=mRNA_H-paniculata_contig445.11235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MKIERLEACKSIVEREHTLHGGGAGGSGMAAQDMRSLFHDMDRVAAAANI
KQAESIDRGGVRRRYLLSHCES*
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mRNA from alignment at H-paniculata_contig445:19670..20288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig445.11235.1 ID=mRNA_H-paniculata_contig445.11235.1|Name=mRNA_H-paniculata_contig445.11235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=619bp|location=Sequence derived from alignment at H-paniculata_contig445:19670..20288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAAAGAAGTGCTCCTGATGAAGATTGAGAGACTAGAAGCTTGCAAGA
GTATCGTGGAGCGCGAGCATACCCTGCATGGCGGAGGCGCGGGGGGGTCA
GGAATGTGGGTAATGCCTACATTTACGTTTTCCACTAACCTAGGTTTGGA
GGATATTGCAACACGAGGGCGTCGCATATGTGTCATTTTTTAAGTTTGGT
CTTTATCGACCGCATTGGTGGGCCGGACCGAGCACACCCCTACTGCACGA
GGAGCCGTCGTTGAAAACGGTTCTATATCCTTGAGGCCACTTTGGTGAAT
GTATTCTGCTCCATATAGAGGTGGAGGGCGTCATTCCATGCTGACTGGGT
GTAGTCCCATACTGGTAGGGTTGCATCGACTATTGCTCGCATGGTTCTCT
GCCAAAAGGAATCAGACTAAATTTCCGTTTGTGGATATATTGCTGTTATT
TTGATGTCTCGTAAACATAATATTTCACACGCACAGGGCCGCTCAAGACA
TGAGATCACTGTTTCATGACATGGACCGAGTCGCAGCTGCTGCTAACATC
AAACAAGCTGAATCAATTGATCGGGGTGGCGTTCGGAGAAGGTACTTGCT
GAGCCACTGTGAAAGCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig445:19670..20288-

>mRNA_H-paniculata_contig445.11235.1 ID=mRNA_H-paniculata_contig445.11235.1|Name=mRNA_H-paniculata_contig445.11235.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig445:19670..20288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATTGAGAGACTAGAAGCTTGCAAGAGTATCGTGGAGCGCGAGCA
TACCCTGCATGGCGGAGGCGCGGGGGGGTCAGGAATATGAAGATTGAGAG
ACTAGAAGCTTGCAAGAGTATCGTGGAGCGCGAGCATACCCTGCATGGCG
GAGGCGCGGGGGGGTCAGGAATGGCCGCTCAAGACATGAGATCACTGTTT
CATGACATGGACCGAGTCGCAGCTGCTGCTAACATCAAACAAGCTGAATC
AATTGATCGGGGTGGCGTTCGGAGAAGGTACTTGCTGAGCCACTGTGAAA
GCTGAGGCCGCTCAAGACATGAGATCACTGTTTCATGACATGGACCGAGT
CGCAGCTGCTGCTAACATCAAACAAGCTGAATCAATTGATCGGGGTGGCG
TTCGGAGAAGGTACTTGCTGAGCCACTGTGAAAGCTGA
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