mRNA_H-paniculata_contig4448.11233.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4448.11233.1
Unique NamemRNA_H-paniculata_contig4448.11233.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4448.11233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4448contigH-paniculata_contig4448:15053..15866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size814
Cds size444
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.3167567-CDS-H-paniculata_contig4448:15052..154961622930339.3167567-CDS-H-paniculata_contig4448:15052..15496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4448 15053..15496 +
1691481248.1686366-CDS-H-paniculata_contig4448:15052..154961691481248.1686366-CDS-H-paniculata_contig4448:15052..15496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4448 15053..15496 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.353221-UTR-H-paniculata_contig4448:15496..158661622930339.353221-UTR-H-paniculata_contig4448:15496..15866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4448 15497..15866 +
1691481248.1828926-UTR-H-paniculata_contig4448:15496..158661691481248.1828926-UTR-H-paniculata_contig4448:15496..15866Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4448 15497..15866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4448.11233.1prot_H-paniculata_contig4448.11233.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4448 15053..15496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4448.11233.1

>prot_H-paniculata_contig4448.11233.1 ID=prot_H-paniculata_contig4448.11233.1|Name=mRNA_H-paniculata_contig4448.11233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=148bp
PGEPPQPPAPPATPGRHVDRFRGVGTRLGKVQALVSNGGEYVRHAAADNR
GLVGTVGGAGAGRSSGDVDGALIGGDSLRVGRTGRSQHRITSRGATARAS
RVGPRRTGAKMDRCLHRTSTFWEGTTRQGGSPVDCKERSVIWSTRPR*
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mRNA from alignment at H-paniculata_contig4448:15053..15866+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4448.11233.1 ID=mRNA_H-paniculata_contig4448.11233.1|Name=mRNA_H-paniculata_contig4448.11233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at H-paniculata_contig4448:15053..15866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGCGAGCCGCCTCAACCTCCTGCCCCACCAGCGACTCCAGGCCGCCA
TGTCGACCGGTTCAGGGGGGTTGGGACTCGCCTCGGCAAGGTGCAGGCAC
TGGTCAGCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAATCGC
GGACTCGTCGGGACCGTTGGGGGAGCGGGTGCCGGCAGATCTTCCGGGGA
CGTCGATGGTGCGCTCATTGGGGGCGACTCTCTTCGTGTTGGCAGAACAG
GGAGGAGTCAGCACCGAATCACAAGCCGCGGTGCTACCGCCCGGGCTAGT
CGCGTGGGCCCACGGAGGACAGGAGCGAAGATGGATCGCTGCCTACACCG
AACATCGACGTTCTGGGAGGGCACGACGCGCCAGGGAGGATCTCCCGTCG
ACTGCAAGGAAAGGTCGGTAATCTGGTCCACAAGGCCAAGATAACGACCT
TGCTCTCGCTGCTTGACAGCCTACCCCCGACCGGTAGGCCACCTGGCCCT
GATGACCCGTTCGGAGGGATCGAGTCGGCCGACGCGGCTAAAGCGAGATT
CCGCAGCATGTCGGAGAGTGGAGCTCTGGCGGTGCAACGGGCACAGCCCT
AGGGCAACGCCAGGACCGTACCTCCAGCAGAGTACGTGCTCATGGAGCGG
AGGATGTAACAACGCGCCACGGCCGAATTTTCCATGGAGCGGGGGCGCAG
GTAGACCAACACCAGCCGCTCCTACACGCGGTCACGCGACTCCTTAAGCG
ACTGGGCATCAAGAGCACGGTAGAGGACAGAGACCCGTTTACGGCGGACC
GGGACTACCGGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig4448:15053..15866+

>mRNA_H-paniculata_contig4448.11233.1 ID=mRNA_H-paniculata_contig4448.11233.1|Name=mRNA_H-paniculata_contig4448.11233.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at H-paniculata_contig4448:15053..15866+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGGCGAGCCGCCTCAACCTCCTGCCCCACCAGCGACTCCAGGCCGCCA
TGTCGACCGGTTCAGGGGGGTTGGGACTCGCCTCGGCAAGGTGCAGGCAC
TGGTCAGCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAATCGC
GGACTCGTCGGGACCGTTGGGGGAGCGGGTGCCGGCAGATCTTCCGGGGA
CGTCGATGGTGCGCTCATTGGGGGCGACTCTCTTCGTGTTGGCAGAACAG
GGAGGAGTCAGCACCGAATCACAAGCCGCGGTGCTACCGCCCGGGCTAGT
CGCGTGGGCCCACGGAGGACAGGAGCGAAGATGGATCGCTGCCTACACCG
AACATCGACGTTCTGGGAGGGCACGACGCGCCAGGGAGGATCTCCCGTCG
ACTGCAAGGAAAGGTCGGTAATCTGGTCCACAAGGCCAAGATAACCCGGC
GAGCCGCCTCAACCTCCTGCCCCACCAGCGACTCCAGGCCGCCATGTCGA
CCGGTTCAGGGGGGTTGGGACTCGCCTCGGCAAGGTGCAGGCACTGGTCA
GCAACGGTGGGGAGTATGTGCGGCATGCTGCCGCAGATAATCGCGGACTC
GTCGGGACCGTTGGGGGAGCGGGTGCCGGCAGATCTTCCGGGGACGTCGA
TGGTGCGCTCATTGGGGGCGACTCTCTTCGTGTTGGCAGAACAGGGAGGA
GTCAGCACCGAATCACAAGCCGCGGTGCTACCGCCCGGGCTAGTCGCGTG
GGCCCACGGAGGACAGGAGCGAAGATGGATCGCTGCCTACACCGAACATC
GACGTTCTGGGAGGGCACGACGCGCCAGGGAGGATCTCCCGTCGACTGCA
AGGAAAGGTCGGTAATCTGGTCCACAAGGCCAAGATAA
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