prot_H-paniculata_contig4447.11232.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4447.11232.1
Unique Nameprot_H-paniculata_contig4447.11232.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length252
Homology
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BLAST of mRNA_H-paniculata_contig4447.11232.1 vs. uniprot
Match: D7FMG4_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG4_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 5.180e-55
Identity = 120/264 (45.45%), Postives = 150/264 (56.82%), Query Frame = 0 
Query:    8 GKGGGVEKRAYP---RLPLTVATPAATSSRNSTPVG----VPTISRLAKGGRFSVALDNTFPPRRSGYPEEALLEEPGSTCRAMVPYRPGSNCSWRTCGDSLGVSNRGLLPLLALPPSPNPNFPA-------------GTAEGGSWVSRRAAPSKREIPSEVFPIVFQYMDAATLCSVSPVSREWRKQGNDDRYWGRLCRSRFNVTPDSFAPPPDPIKRLYQLQYGSLRAMRKGC--HQRYHSAPPAIPAQTSAQLLMGLMAAN 249
            G+G GVEKR +P   R      TP    + + +  G        S ++KGGRFS   +      R G     LL E G  CRA+VPY      S         +      PLLALPPS   + P+              ++  GS+  +  A  + +IP EVFPI FQYMDA TLC+VS VSREW+KQGNDD+YW  LCR+RFNV PD+FAPPPDPIKRLYQLQ+GS +AM +G   H  +  APP IP  TSAQLL+GL+A+N
Sbjct:   15 GRGTGVEKRWHPASTRHSGPGTTPYRREAVDDSDAGGEGSTKIFSHISKGGRFSDRGE------REGT-SIVLLPEAGPGCRALVPYTASPARS--------RLPLPAHPPLLALPPSLGCDAPSLYSSCSLSSCNSSSSSPNGSF--KGGAARRVDIPLEVFPIAFQYMDALTLCTVSSVSREWKKQGNDDQYWRHLCRARFNVIPDAFAPPPDPIKRLYQLQHGSFKAMCRGDRRHGLHSGAPPVIPRHTSAQLLVGLLASN 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4447.11232.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG4_ECTSI5.180e-5545.45F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 137..226
e-value: 2.7E-9
score: 38.8
IPR001810F-box domainPFAMPF12937F-box-likecoord: 144..187
e-value: 1.1E-5
score: 25.2
IPR001810F-box domainPROSITEPS50181FBOXcoord: 139..185
score: 10.478
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 144..208

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4447contigH-paniculata_contig4447:1779..10500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4447.11232.1mRNA_H-paniculata_contig4447.11232.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4447 1766..11467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4447.11232.1 ID=prot_H-paniculata_contig4447.11232.1|Name=mRNA_H-paniculata_contig4447.11232.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MEYSASTGKGGGVEKRAYPRLPLTVATPAATSSRNSTPVGVPTISRLAKG
GRFSVALDNTFPPRRSGYPEEALLEEPGSTCRAMVPYRPGSNCSWRTCGD
SLGVSNRGLLPLLALPPSPNPNFPAGTAEGGSWVSRRAAPSKREIPSEVF
PIVFQYMDAATLCSVSPVSREWRKQGNDDRYWGRLCRSRFNVTPDSFAPP
PDPIKRLYQLQYGSLRAMRKGCHQRYHSAPPAIPAQTSAQLLMGLMAANA
M*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf