mRNA_H-paniculata_contig4446.11231.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4446.11231.1
Unique NamemRNA_H-paniculata_contig4446.11231.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4446.11231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4446contigH-paniculata_contig4446:11731..13943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size780
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4446.11231.1prot_H-paniculata_contig4446.11231.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4446 11731..12680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.0701814-CDS-H-paniculata_contig4446:11730..120531622930339.0701814-CDS-H-paniculata_contig4446:11730..12053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 11731..12053 -
1691481248.0396805-CDS-H-paniculata_contig4446:11730..120531691481248.0396805-CDS-H-paniculata_contig4446:11730..12053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 11731..12053 -
1622930339.0852518-CDS-H-paniculata_contig4446:12481..126801622930339.0852518-CDS-H-paniculata_contig4446:12481..12680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 12482..12680 -
1691481248.0496495-CDS-H-paniculata_contig4446:12481..126801691481248.0496495-CDS-H-paniculata_contig4446:12481..12680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 12482..12680 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930339.0984373-UTR-H-paniculata_contig4446:12680..127741622930339.0984373-UTR-H-paniculata_contig4446:12680..12774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4446 12681..12774 -
1691481248.0611198-UTR-H-paniculata_contig4446:12680..127741691481248.0611198-UTR-H-paniculata_contig4446:12680..12774Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4446 12681..12774 -
1622930339.1122751-UTR-H-paniculata_contig4446:13779..139431622930339.1122751-UTR-H-paniculata_contig4446:13779..13943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4446 13780..13943 -
1691481248.0702496-UTR-H-paniculata_contig4446:13779..139431691481248.0702496-UTR-H-paniculata_contig4446:13779..13943Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4446 13780..13943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4446.11231.1

>prot_H-paniculata_contig4446.11231.1 ID=prot_H-paniculata_contig4446.11231.1|Name=mRNA_H-paniculata_contig4446.11231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MASPPRSARKRKHARRKSQARGTSPDEDSASSACLRGNRTTDVARPTIST
DVRSSSRGKRRRPATEDFPGIFPRLDKGRSHPCPPDGSSRDRADVAPTMS
WFRLGVREVSVQGVGASVSTGRLMQLFFGASAIGSTSPSGSAGVTIGAAG
VPTIGTQTNKTRDEGEKEKKERRG
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mRNA from alignment at H-paniculata_contig4446:11731..13943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4446.11231.1 ID=mRNA_H-paniculata_contig4446.11231.1|Name=mRNA_H-paniculata_contig4446.11231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2213bp|location=Sequence derived from alignment at H-paniculata_contig4446:11731..13943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGAGAAATGCAATCATTATCAAAAGTCACATAATCGTGGACTGTTTACC
CTCTCTGTAGCATATGATACTTAGAGCTCGGAGTTGACACCGAGCATCCA
ATAAGTGTATACAACTGTGTTGATGAAGTAATGGCGCGCTGAAAAAAAGT
ATGGGGCTCGCATGGTGAGTGAGTTGGGTGCCTGAATGAAGATGTGTGTA
GTGTGCAAATTGTGAATCGAAGATGTTACAAATTTGAATTGATCTGTTGC
TAAATTGTCGTGGTGCACGATACCCGCTGCACCTACTGACTTCTGCAGCA
AGCACACGTTTGTCGGAGCAGCCCGCAGCATTCGTTTGGCTCTGGGGTGC
ACACGTATTGATTTCACTGCCGTGACATGAGTTGCAAGCAACATCAGTGT
TTTCAATTGGTCCCAGAGAAGACGATACCCGATCACGATGTACTGAACAA
CTGATTGACTGCACTCGCCTGTGTGCACTTGTTAAAAACGTTCATCCTTT
ATTTCGCGCCCACCCGAAACTGCCTCGAACACATCGACAACTCACCCTCT
CTCTGTGAGGTCGGTTGCCTGATATCTACTGGACCTAGGTCAAAGCATTC
TGGCAGTGATCCGCCCCTCAGTAACGACGCGCATGGTTGAATGTGGTTCT
AAAGACCTCGACAGTCGTTGGTCGCGTTTGTTTGTAATTGGCGGGGCAAT
TGTCGGTATCTTGACGGTACTGTTTTATGGTGGTGAGCTTAGTACCACCG
CGGGTACTCTTTTGTCATGTGGATATGTAGGTTGGATACGAGACAAGACG
GTATACTGTACTAGCGCCAAGATATCACCTTCTGGGTTTGTTGATATCTC
CAAATTACACTATACCTTGGCTGAGATTTTGTTACAGGATTCCGCCCTTG
GCATTTTTGAGCCGCATGTAGTGCTCCTACTATACCTACCAACGGGGGGT
GCGGTGCGTGAAGGTGCGCCTGCTACTTCAAGTCATAAACGCTATCGTCG
GCGTGGTAGGACTAGACGGGCAAGGTTTTGTTCCTACTACACTTTATGCG
GCATCCTGTGAACAGTGCCGGGAGAGAACGACCCTTGTGTAGTAGTGCAG
TGTGTGCAGTTCGAACGAGGATACAGGTTGATGACGCCCTTGTGTTTTCG
CCCCACGTCCATCTGACAGTCGCTGCCAAATACGAATCGCGAGTGTGAAA
CAAGGAAGCCTGGAATGCTAGAGTGTCACCGATAGCAGGCACAAATTTAT
CTGCACCAACACAATGGCGTCACCTCCGAGGTCGGCGCGGAAGCGTAAGC
ACGCCCGGCGAAAATCTCAAGCACGAGGGACATCGCCTGATGAAGACTCT
GCAAGCTCTGCTTGTTTGCGAGGCAACCGTACAACAGATGTCGCTCGACC
TACGATTTCGACTGACGTCCGTTCCAGTTCCAGGGGGAAACGTCGGAGGC
CAGCAACTGAAGGTGAATCGATTGCCCCCGGTTGTTTGCAAGAACCACGC
GCATGCTGTTGTTCTTTGATAGGGAGCTGATATATTGGTTGTCGTGTGGT
GAATTTGCAGGTGAGGGATTTAACTTGGTTTCCCGCGTGTGTCGGAAAAT
ATATATGTACGTCTGTCGTATCTTTTCCGACTCTTGTTTTTCGAAATGCT
TAGAGTTCTCATGGGTTACTTTTCTTCTACATACCTTTTCGTCTGGCGAA
AATTCTTAGTAGAACAGTGCACACGGCTTATGAACGCGCCAGCCTCCAGG
TGACTCTTGATCAACCATTTGAGTTTATTGATCGTTGCCGATTTGTACCT
CCTTGTTCGCCGTGAAAACTAAAAGCTGTTCAGCGTCGCCAATTAACTCG
CACATACATTCCTCTGCACCCGGGTCATGCACCACAGCAGATTTCCCTGG
AATATTCCCGCGGCTTGATAAGGGCAGAAGTCACCCTTGTCCACCGGATG
GCAGTAGTCGTGATCGGGCTGATGTCGCCCCCACGATGAGTTGGTTTCGA
CTGGGAGTGCGCGAGGTTTCCGTCCAGGGCGTTGGAGCTTCAGTTTCGAC
CGGCCGTTTGATGCAACTCTTCTTCGGCGCTAGCGCAATCGGGAGCACAA
GCCCGAGCGGATCGGCGGGAGTGACGATCGGCGCAGCAGGCGTACCCACT
ATCGGAACACAGACGAATAAGACGCGGGACGAGGGGGAAAAGGAAAAAAA
GGAGAGACGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4446:11731..13943-

>mRNA_H-paniculata_contig4446.11231.1 ID=mRNA_H-paniculata_contig4446.11231.1|Name=mRNA_H-paniculata_contig4446.11231.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig4446:11731..13943- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTCACCTCCGAGGTCGGCGCGGAAGCGTAAGCACGCCCGGCGAAA
ATCTCAAGCACGAGGGACATCGCCTGATGAAGACTCTGCAAGCTCTGCTT
GTTTGCGAGGCAACCGTACAACAGATGTCGCTCGACCTACGATTTCGACT
GACGTCCGTTCCAGTTCCAGGGGGAAACGTCGGAGGCCAGCAACTGAAGA
TGGCGTCACCTCCGAGGTCGGCGCGGAAGCGTAAGCACGCCCGGCGAAAA
TCTCAAGCACGAGGGACATCGCCTGATGAAGACTCTGCAAGCTCTGCTTG
TTTGCGAGGCAACCGTACAACAGATGTCGCTCGACCTACGATTTCGACTG
ACGTCCGTTCCAGTTCCAGGGGGAAACGTCGGAGGCCAGCAACTGAAGAT
TTCCCTGGAATATTCCCGCGGCTTGATAAGGGCAGAAGTCACCCTTGTCC
ACCGGATGGCAGTAGTCGTGATCGGGCTGATGTCGCCCCCACGATGAGTT
GGTTTCGACTGGGAGTGCGCGAGGTTTCCGTCCAGGGCGTTGGAGCTTCA
GTTTCGACCGGCCGTTTGATGCAACTCTTCTTCGGCGCTAGCGCAATCGG
GAGCACAAGCCCGAGCGGATCGGCGGGAGTGACGATCGGCGCAGCAGGCG
TACCCACTATCGGAACACAGACGAATAAGACGCGGGACGAGGGGGAAAAG
GAAAAAAAGGAGAGACGCGGGATTTCCCTGGAATATTCCCGCGGCTTGAT
AAGGGCAGAAGTCACCCTTGTCCACCGGATGGCAGTAGTCGTGATCGGGC
TGATGTCGCCCCCACGATGAGTTGGTTTCGACTGGGAGTGCGCGAGGTTT
CCGTCCAGGGCGTTGGAGCTTCAGTTTCGACCGGCCGTTTGATGCAACTC
TTCTTCGGCGCTAGCGCAATCGGGAGCACAAGCCCGAGCGGATCGGCGGG
AGTGACGATCGGCGCAGCAGGCGTACCCACTATCGGAACACAGACGAATA
AGACGCGGGACGAGGGGGAAAAGGAAAAAAAGGAGAGACGCGGG
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