mRNA_H-paniculata_contig4446.11230.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4446.11230.1
Unique NamemRNA_H-paniculata_contig4446.11230.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4446.11230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4446contigH-paniculata_contig4446:8237..10736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.6e-09
Seed eggNOG ortholog2880.D8LCN1
Preferred nameBRCA2
KEGG koko:K06236,ko:K08775
KEGG Pathwayko03440,ko03460,ko04151,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,ko05200,ko05212,ko05224,map03440,map03460,map04151,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165,map05200,map05212,map05224
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000711,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000781,GO:0000784,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0000910,GO:0001556,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0002020,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006978,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007098,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0007569,GO:0007584,GO:0008022,GO:0008080,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008406,GO:0008585,GO:0008608,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0009994,GO:0010033,GO:0010165,GO:0010212,GO:0010225,GO:0010243,GO:0010332,GO:0010468,GO:0010484,GO:0010485,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010639,GO:0010778,GO:0010948,GO:0012501,GO:0012505,GO:0014070,GO:0015630,GO:0015631,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030097,GO:0030141,GO:0030154,GO:0030330,GO:0030879,GO:0031023,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031410,GO:0031619,GO:0031667,GO:0031974,GO:0031981,GO:0031982,GO:0032200,GO:0032355,GO:0032465,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033260,GO:0033313,GO:0033365,GO:0033554,GO:0033593,GO:0033599,GO:0033600,GO:0033993,GO:0034212,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035556,GO:0035825,GO:0036211,GO:0040007,GO:0040020,GO:0042127,GO:0042221,GO:0042493,GO:0042592,GO:0042770,GO:0042771,GO:0042772,GO:0042802,GO:0043009,GO:0043015,GO:0043060,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0044786,GO:0045005,GO:0045132,GO:0045137,GO:0045143,GO:0045184,GO:0045786,GO:0045787,GO:0045835,GO:0045893,GO:0045931,GO:0045934,GO:0045935,GO:0046483,GO:0046545,GO:0046660,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048478,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050000,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051276,GO:0051298,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051311,GO:0051316,GO:0051321,GO:0051445,GO:0051447,GO:0051455,GO:0051598,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060322,GO:0061458,GO:0061640,GO:0061733,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070198,GO:0070199,GO:0070200,GO:0070727,GO:0071695,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072332,GO:0072594,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097327,GO:0097708,GO:0098687,GO:0098813,GO:0099086,GO:0099503,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901563,GO:1901564,GO:1901576,GO:1901698,GO:1901700,GO:1902298,GO:1902680,GO:1902969,GO:1903046,GO:1903047,GO:1903506,GO:1903508,GO:1990426,GO:1990505,GO:2000026,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001141
EggNOG free text desc.homologous chromosome orientation involved in meiotic metaphase I plate congression
EggNOG OGsKOG4751@1,KOG4751@2759
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-03_002260.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03036,ko03400,ko04121,ko04516
Exons3
Model size1132
Cds size1131
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4446.11230.1prot_H-paniculata_contig4446.11230.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4446 8238..10736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930338.9867506-CDS-H-paniculata_contig4446:8237..84021622930338.9867506-CDS-H-paniculata_contig4446:8237..8402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 8238..8402 -
1691481247.9980652-CDS-H-paniculata_contig4446:8237..84021691481247.9980652-CDS-H-paniculata_contig4446:8237..8402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 8238..8402 -
1622930339.0042293-CDS-H-paniculata_contig4446:9381..95011622930339.0042293-CDS-H-paniculata_contig4446:9381..9501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 9382..9501 -
1691481248.0145388-CDS-H-paniculata_contig4446:9381..95011691481248.0145388-CDS-H-paniculata_contig4446:9381..9501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 9382..9501 -
1622930339.0198753-CDS-H-paniculata_contig4446:9890..107361622930339.0198753-CDS-H-paniculata_contig4446:9890..10736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 9891..10736 -
1691481248.0273561-CDS-H-paniculata_contig4446:9890..107361691481248.0273561-CDS-H-paniculata_contig4446:9890..10736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4446 9891..10736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4446.11230.1

>prot_H-paniculata_contig4446.11230.1 ID=prot_H-paniculata_contig4446.11230.1|Name=mRNA_H-paniculata_contig4446.11230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=377bp
LRAGRRGTGWIGRNSQKLTTAGTVEKSEYAAAGREVVAAVSRATAVTAAA
LSNSRDDFLPSNPDGGKPDGSDVNDIKVATPSGSLSSGTFDVPADTKAMQ
ADVKTEPMAADGPMPTPERHQNEAVNEASSVADSAQGSADGSITAADVHQ
EQKVMAAEPTLSTSTLPISLRRVPQCSSPSDVEVALPDTTTVPVPDDVGP
EIGHVRLASSPSRQLAAVMATTVGRGENCWEDGLGEETTPARPRQLAGTF
EFFSGHCGGGEAAVGGREEAADDGHHLTPTEEGVQKLVVNSAGSPTPSSC
GLGFDYFPTGLSQGTGSGADIEGVTAAEMLGIRRDLSPELPNPASGMALM
TAPIPTTTPAAPAAPITAHRSYREEPL
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mRNA from alignment at H-paniculata_contig4446:8237..10736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4446.11230.1 ID=mRNA_H-paniculata_contig4446.11230.1|Name=mRNA_H-paniculata_contig4446.11230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2500bp|location=Sequence derived from alignment at H-paniculata_contig4446:8237..10736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGCGCAGGAAGGAGAGGGACAGGATGGATCGGAAGAAATAGTCAGAA
GCTGACCACCGCTGGCACGGTAGAAAAATCCGAATATGCTGCGGCTGGTC
GAGAGGTCGTGGCGGCAGTCTCTCGGGCGACGGCGGTGACGGCGGCAGCG
CTGTCGAATTCGAGAGATGACTTCCTTCCGTCAAATCCAGATGGAGGGAA
GCCGGATGGATCGGATGTCAATGACATCAAGGTCGCTACGCCGTCGGGAT
CTTTGTCGTCGGGCACCTTCGATGTGCCTGCTGATACAAAAGCTATGCAA
GCAGACGTGAAAACGGAACCTATGGCGGCCGACGGACCGATGCCGACGCC
CGAGCGTCATCAGAATGAGGCTGTAAACGAAGCGTCGAGTGTTGCAGATT
CGGCGCAAGGGTCGGCCGATGGGTCAATCACCGCCGCCGACGTTCACCAG
GAGCAGAAGGTGATGGCTGCCGAACCCACGCTCTCGACGTCTACACTCCC
GATCAGTTTGAGACGTGTACCGCAGTGCTCCTCCCCGTCCGATGTGGAGG
TGGCTCTACCGGATACTACGACGGTACCCGTTCCAGATGATGTTGGCCCT
GAGATCGGCCATGTACGACTGGCATCAAGCCCGTCGCGGCAACTGGCAGC
AGTGATGGCCACAACAGTTGGGAGAGGTGAAAATTGTTGGGAAGACGGAC
TGGGGGAGGAGACAACCCCCGCGCGGCCGAGACAACTCGCTGGGACTTTC
GAATTCTTCTCGGGGCACTGCGGCGGCGGCGAAGCAGCAGTAGGAGGACG
AGAAGAGGCGGCAGACGATGGTCATCATCTAACGCCGACGGAAGAGGTAA
GCCGGTAGTACCTTCTCGACCTTGACGTTTATTTTTGTGACAATAATCAG
CGTGAGGCATGTTTTGCCAGGTTTTGGGGCGTGTTTTCCCCAACTCCTGC
GCTGTAGAGTGTACCATATTTTCGATGTACGCACGAGCCGCGCCGTTTGT
GTGGGCTTCTCTTTTTCTAAGCCTTAAATAATGAAGTGTGTCCTGCCGAA
TTTCTCGCCGGGAACCAAATTCGGTGTTGTATCGTTGTGGGGGTCTTGCA
GCCTACAATAGTCTTGGCCCGCCGAGATGACAAACTGCATGGAAAAGGAG
CATTCGTGCGCTTATGGAGCGGCTTGGTATGTGTTGACTGCCTCCCTGTA
CCCGGTGTGCTCCGCCAATCATCGCCCGGTTGCAGGGTGTGCAGAAGCTC
GTCGTGAACTCCGCTGGTTCGCCAACTCCCTCTTCCTGTGGCCTTGGTTT
CGACTACTTCCCTACTGGCCTCAGCCAAGGGACAGGCAGCGGGGCTGACA
TCGAGGTATATTACCGTTTCCTTCATCTGGCGTGTTTTTCTTCTTTTTCT
TCCGCTCTAGGTTATTCTCTCTAAACAATTCGACAAAGAAATTCTACCAA
GTGAGGGGGATGTGCCCGTGGGTGCGTTATATTATTCCCGAGTATTTCTT
CCTGCGTCAATTTTTAGTCACGATTTGTGTCGAGGGTCACTGGTTTCAAC
TGATAAGGGGGCAACACAATGGTGGGCTCTCTTTTTCGAGCTAGATGCCC
AAATATTTCGAGTGCGGGTCTGACTTTTGGCACCAACTTTGCACCCTCCA
GACAAATACGAATGGAGCATTCGCAACTATCTTGAACTATAATGATTTTT
ATTGGGTAAACACATATTTATTCGTTTACAAGTCTTTAAATGGTCATTCT
ACAGATGGTCACCAGGTGGTCGTATACCTAGTGAAATGTCACACGTGCAG
GTGCTGTTTATTTTCTGGATGGTAGTGTACAGATTGAAAACTCGATCTGC
CAGAGCTTTTCGATGCCCCATGGTATATCGAGTCCACTGCATATTATTTA
CGTGACATGAACATCTTCCCCAACTCAAACAGATCCAGTATTTGTTCCAG
ATTTCTCGTATTCATTTGTGTCTTGTATTCGTATTTGTCCCTGTCGCAAA
ATACAAGCGGCCTAAGCTAAAAACTGTGTTACACTTTACCGTGGCGAAGT
ATTTCTGTCGTGAATGTAAAAGTTAATACGATTGTGGTACATGCGGTGCG
GGACTAAAAATTATGACCAATGCATGCCGTGGCATGGTACCGGACAGGCT
AAATAGTATGGTTATAATATAATCCAAAGTTCTTGGTATTCTATAATATT
CCATATGCATCGCGAGGGCATATGACACAGAATACCATGCAATAGCCACA
CGTGGCGGGGCGCCTTGGATACTTTTGACTGAAGTCTAGCCGTACCTCCG
TCCGCTCTGTCACCGCTGCTATCTTTCACCTCAGGGCGTAACCGCTGCGG
AAATGCTTGGCATCAGGAGAGACCTATCGCCCGAACTTCCTAACCCTGCC
TCCGGTATGGCGTTGATGACCGCACCGATCCCCACGACCACGCCAGCGGC
CCCGGCCGCACCTATCACCGCCCACCGATCATATCGAGAAGAGCCCTTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig4446:8237..10736-

>mRNA_H-paniculata_contig4446.11230.1 ID=mRNA_H-paniculata_contig4446.11230.1|Name=mRNA_H-paniculata_contig4446.11230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2262bp|location=Sequence derived from alignment at H-paniculata_contig4446:8237..10736- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTACGCGCAGGAAGGAGAGGGACAGGATGGATCGGAAGAAATAGTCAGAA
GCTGACCACCGCTGGCACGGTAGAAAAATCCGAATATGCTGCGGCTGGTC
GAGAGGTCGTGGCGGCAGTCTCTCGGGCGACGGCGGTGACGGCGGCAGCG
CTGTCGAATTCGAGAGATGACTTCCTTCCGTCAAATCCAGATGGAGGGAA
GCCGGATGGATCGGATGTCAATGACATCAAGGTCGCTACGCCGTCGGGAT
CTTTGTCGTCGGGCACCTTCGATGTGCCTGCTGATACAAAAGCTATGCAA
GCAGACGTGAAAACGGAACCTATGGCGGCCGACGGACCGATGCCGACGCC
CGAGCGTCATCAGAATGAGGCTGTAAACGAAGCGTCGAGTGTTGCAGATT
CGGCGCAAGGGTCGGCCGATGGGTCAATCACCGCCGCCGACGTTCACCAG
GAGCAGAAGGTGATGGCTGCCGAACCCACGCTCTCGACGTCTACACTCCC
GATCAGTTTGAGACGTGTACCGCAGTGCTCCTCCCCGTCCGATGTGGAGG
TGGCTCTACCGGATACTACGACGGTACCCGTTCCAGATGATGTTGGCCCT
GAGATCGGCCATGTACGACTGGCATCAAGCCCGTCGCGGCAACTGGCAGC
AGTGATGGCCACAACAGTTGGGAGAGGTGAAAATTGTTGGGAAGACGGAC
TGGGGGAGGAGACAACCCCCGCGCGGCCGAGACAACTCGCTGGGACTTTC
GAATTCTTCTCGGGGCACTGCGGCGGCGGCGAAGCAGCAGTAGGAGGACG
AGAAGAGGCGGCAGACGATGGTCATCATCTAACGCCGACGGAAGAGCTAC
GCGCAGGAAGGAGAGGGACAGGATGGATCGGAAGAAATAGTCAGAAGCTG
ACCACCGCTGGCACGGTAGAAAAATCCGAATATGCTGCGGCTGGTCGAGA
GGTCGTGGCGGCAGTCTCTCGGGCGACGGCGGTGACGGCGGCAGCGCTGT
CGAATTCGAGAGATGACTTCCTTCCGTCAAATCCAGATGGAGGGAAGCCG
GATGGATCGGATGTCAATGACATCAAGGTCGCTACGCCGTCGGGATCTTT
GTCGTCGGGCACCTTCGATGTGCCTGCTGATACAAAAGCTATGCAAGCAG
ACGTGAAAACGGAACCTATGGCGGCCGACGGACCGATGCCGACGCCCGAG
CGTCATCAGAATGAGGCTGTAAACGAAGCGTCGAGTGTTGCAGATTCGGC
GCAAGGGTCGGCCGATGGGTCAATCACCGCCGCCGACGTTCACCAGGAGC
AGAAGGTGATGGCTGCCGAACCCACGCTCTCGACGTCTACACTCCCGATC
AGTTTGAGACGTGTACCGCAGTGCTCCTCCCCGTCCGATGTGGAGGTGGC
TCTACCGGATACTACGACGGTACCCGTTCCAGATGATGTTGGCCCTGAGA
TCGGCCATGTACGACTGGCATCAAGCCCGTCGCGGCAACTGGCAGCAGTG
ATGGCCACAACAGTTGGGAGAGGTGAAAATTGTTGGGAAGACGGACTGGG
GGAGGAGACAACCCCCGCGCGGCCGAGACAACTCGCTGGGACTTTCGAAT
TCTTCTCGGGGCACTGCGGCGGCGGCGAAGCAGCAGTAGGAGGACGAGAA
GAGGCGGCAGACGATGGTCATCATCTAACGCCGACGGAAGAGGGTGTGCA
GAAGCTCGTCGTGAACTCCGCTGGTTCGCCAACTCCCTCTTCCTGTGGCC
TTGGTTTCGACTACTTCCCTACTGGCCTCAGCCAAGGGACAGGCAGCGGG
GCTGACATCGAGGGTGTGCAGAAGCTCGTCGTGAACTCCGCTGGTTCGCC
AACTCCCTCTTCCTGTGGCCTTGGTTTCGACTACTTCCCTACTGGCCTCA
GCCAAGGGACAGGCAGCGGGGCTGACATCGAGGGCGTAACCGCTGCGGAA
ATGCTTGGCATCAGGAGAGACCTATCGCCCGAACTTCCTAACCCTGCCTC
CGGTATGGCGTTGATGACCGCACCGATCCCCACGACCACGCCAGCGGCCC
CGGCCGCACCTATCACCGCCCACCGATCATATCGAGAAGAGCCCTTGGGC
GTAACCGCTGCGGAAATGCTTGGCATCAGGAGAGACCTATCGCCCGAACT
TCCTAACCCTGCCTCCGGTATGGCGTTGATGACCGCACCGATCCCCACGA
CCACGCCAGCGGCCCCGGCCGCACCTATCACCGCCCACCGATCATATCGA
GAAGAGCCCTTG
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