mRNA_H-paniculata_contig4439.11215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4439.11215.1
Unique NamemRNA_H-paniculata_contig4439.11215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4439.11215.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 6.730e-48
Identity = 98/104 (94.23%), Postives = 101/104 (97.12%), Query Frame = 1 
Query: 1129 VPVGEPLDSSIFQVISANSFKPIEPVSSYDKFRLMRRLRKIGGILMTLHNVLMMGAPYDLLEKIFRKCCVRVKYIIADQLAVEAKQEDESEYEGGGG-TYTGGE 1437
            VPVGEPLDSSIFQVISANSFKPIEPVSS+DKFRLMRRLRKIGGILMTLHNVLMM APYDLLEK+FRKCCVRVKYIIADQLAVEAKQEDESEYEGGGG +Y GGE
Sbjct: 1068 VPVGEPLDSSIFQVISANSFKPIEPVSSFDKFRLMRRLRKIGGILMTLHNVLMMEAPYDLLEKLFRKCCVRVKYIIADQLAVEAKQEDESEYEGGGGASYNGGE 1171
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BLAST of mRNA_H-paniculata_contig4439.11215.1 vs. uniprot
Match: A0A836CAV0_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV0_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.180e-18
Identity = 46/100 (46.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query: 1108 DGNSGRAVPVGEPLDSSIFQVISANSFKPIEPVSSYDKFRLMRRLRKIGGILMTLHNVLMMGAPYDLLEKIFRKCCVRVKYIIADQLAVEAKQEDESEYE 1407
            +G     VP+ +PLDS +F ++ A+ + P+  + S+ +F+L +RLRK+GG+LM LHNVLM+  PYD+LE + RK   R+KYIIA+ +  E+K +D SE E
Sbjct: 1013 EGKMKLPVPLDQPLDSRVFAIVLASGYAPLGQIDSFTRFQLTKRLRKLGGVLMVLHNVLMLEDPYDVLETLLRKSFARIKYIIAEVVMEESKLDDASELE 1112
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4439.11215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI6.730e-4894.23Helicase ATP-binding domain-containing protein n=2... [more]
A0A836CAV0_9STRA2.180e-1846.00P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4439contigH-paniculata_contig4439:10298..13454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue2.2e-26
Seed eggNOG ortholog2880.D7FZQ4
Preferred nameDDX60
KEGG koko:K20103
Hectar predicted targeting categorysignal peptide
GOsGO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002831,GO:0002833,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0010646,GO:0010647,GO:0023051,GO:0023056,GO:0031347,GO:0031349,GO:0032101,GO:0032103,GO:0039531,GO:0039533,GO:0039535,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043900,GO:0043902,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045111,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050688,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051239,GO:0051240,GO:0051704,GO:0051707,GO:0065007,GO:0080134,GO:0097159,GO:1900245,GO:1900246,GO:1901363,GO:1902531,GO:1902533
EggNOG free text desc.helicase activity
EggNOG OGsCOG4581@1,KOG0949@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Exons3
Model size1666
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4439.11215.1prot_H-paniculata_contig4439.11215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4439 12384..13309 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.361763-UTR-H-paniculata_contig4439:10297..114641622930337.361763-UTR-H-paniculata_contig4439:10297..11464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 10298..11464 +
1691481247.3930542-UTR-H-paniculata_contig4439:10297..114641691481247.3930542-UTR-H-paniculata_contig4439:10297..11464Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 10298..11464 +
1622930337.3807197-UTR-H-paniculata_contig4439:12320..123831622930337.3807197-UTR-H-paniculata_contig4439:12320..12383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 12321..12383 +
1691481247.4072719-UTR-H-paniculata_contig4439:12320..123831691481247.4072719-UTR-H-paniculata_contig4439:12320..12383Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 12321..12383 +
1622930337.4302006-UTR-H-paniculata_contig4439:13309..134541622930337.4302006-UTR-H-paniculata_contig4439:13309..13454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 13310..13454 +
1691481247.4482949-UTR-H-paniculata_contig4439:13309..134541691481247.4482949-UTR-H-paniculata_contig4439:13309..13454Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4439 13310..13454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.3956616-CDS-H-paniculata_contig4439:12383..124931622930337.3956616-CDS-H-paniculata_contig4439:12383..12493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 12384..12493 +
1691481247.4161015-CDS-H-paniculata_contig4439:12383..124931691481247.4161015-CDS-H-paniculata_contig4439:12383..12493Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 12384..12493 +
1622930337.412785-CDS-H-paniculata_contig4439:13128..133091622930337.412785-CDS-H-paniculata_contig4439:13128..13309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 13129..13309 +
1691481247.431568-CDS-H-paniculata_contig4439:13128..133091691481247.431568-CDS-H-paniculata_contig4439:13128..13309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4439 13129..13309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4439.11215.1

>prot_H-paniculata_contig4439.11215.1 ID=prot_H-paniculata_contig4439.11215.1|Name=mRNA_H-paniculata_contig4439.11215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MRRLRKIGGILMTLHNVLMMGAPYDLLEKIFRKCCVRVKYIIADQLAVEA
KQEDESEYEGGGGTYTGGEEGEAPSTAAVAATAAGASSSVEESKGK*
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mRNA from alignment at H-paniculata_contig4439:10298..13454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4439.11215.1 ID=mRNA_H-paniculata_contig4439.11215.1|Name=mRNA_H-paniculata_contig4439.11215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3157bp|location=Sequence derived from alignment at H-paniculata_contig4439:10298..13454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTTCTGTTGTACAGTTTTTTTTTTCTTTACATATTTAGTGTGGTAAT
TGAGAAGATAGGTGTAGAGTTAGTTGTCGGTGGTTGTGAATCGGTTTAAG
GTACATTCTGCAAGGTGCAGTACGTGAATCGTTGTAAGGTACATTCTGTA
GTGGCAGCGGGAACAAAATGTACCTTGTTCAGTCCAAGTGCGGTTTATCC
AAGTGCAGGTCCCTTAACTGAATCCTACTGCCAGGAAAAATATTTCATGC
AGTTTTGACGCACATAGCGCACAGCAATACCTGAGGTAGGGCTACATGCT
GTACATACAAACATATATCGAACGAGTTGGCTGCTGAACGATTGTGACGA
TGTGAGGCTGTTTGTTTGAGAAATGAATGTTTTCACCCCTGGACAAACAT
AAATACGTGAAGCATTCCTAATGAATAGGAATCATCCGCAAGAAGGATCA
GAATGTGAGGGCACATGGAATAAAGTGTTGACCGTATTGAATCGTTTTGT
AAGTCTTTTTTTTAGAAAGAGCAATCGCTCATTTGGTAGGGGGGTCCTGG
GATGGCACATGGAATATAAGAGCTAACTCATCCTGAACAAACGTCCAGGC
GACGACACTTGTACCTTTTCGTCGTAACCACTCCAAGGGTTCAGTATTCG
CTATTAACCATGGCGTGAATGCTTTTTTTTAGATGATTTTGTGTGGATAC
TGGACACTGTGTTGCAGGCAAGCGCCATGCTGATTCGCCTTTTTTTGCCT
TTGCCACATGCACGACGATTTGGACAGCCCTCGTGGGGTTAGTTAGTACG
GCAGTCGGTAGGTTCTTGATAAGTTGTTGATGAGCCTAAATGTGATTGTA
AGTTTGGCTATTTGGTTTGTTGTATGTTTCCGTTCCCTTTTCGTCGTCTT
GTTTGATGTTATTTTGAGAGTTTTAAATTGCCGACTATTTCTACAGTACC
GTACAAACCTCCACGTAGCGCTTAGCTTGATGCCCTGGGTACGGTGGTAT
CTCATGTCTCGTCCTCGCGGATATATAGGGCGTTACTGGTTTGTGAAGTG
CTTTTCTTGAACGTGTTTTTTTTGTTGTCGGTTACTCGTTGGAATGTACA
TTTGCTGGATGGGAACTCTGGGCGAGCAGTTCCGGTGGGAGAGCCGCTGG
ACAGCTCCATCTTCCAGGTATGCAATGATATGTAGCAGCCAGCCAGACAA
AAAGATTTCGTTGTTGTCGAATGTTGGTGGTTGTTGTATTGATGCTGTTG
TTGTCTAATTTTTGTCAGATGTTTGTCATCACCTTTTTCCAACTTCGGTG
CGTACTCCAGAGTTCTCACAATCGATCAGACTATTTTCTTATCGTGGATT
TTTTTGTCGACATTGGTTTACCCTTTTTGTGGGGTTCAGCAGCGCATAGC
TCGCCGAGCACTTGAACCAGAAGAATTGGATTTCGTGGGAAATTGGTTCG
CAAATGTGTGTTTGTGTAAGGGACATCTTATTCGTCCTCTTGTTGCAGCA
GCCGCCCAGCTGCGCGGTTTCCCATTTCTCCACTTTTTTCCGTTACATTT
TTTTTGTCAGGGATGGAGAACAATACGCTGAAAATGGTGAATAATTTTTT
AATCTTTTGGATGTTTTTTTCTTTTTTAACCCTCGGAAGGCTGAGGCAAA
AACCATTATCCGATGCTTCCATACTTGAAGTATTTTACCGAAGTATTTGT
ACATTTCCTTCAACAAAACAGAGTTATTTATTCCTCTGCGGGGTAGGTGA
CACCCCGGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGGTTGCATTGGGA
TGTTGGTTCTACGATATAGCGCTCATCTCGTACACGTTGCACATCCGATG
CATATAACGTGGACTGCCTGTGACGAGCTTTGCTCAGTTTTACGCCTTTT
GTTTTGAGGTGTTCCGCTACCTTGCATTTCGTCTGTGCTTTGTGTGCCTT
GGGTGTCGTTGGGTACGACGTAAGTTTGTACCTACTGTAAGTGCATGTCA
TCCGCTGAACGAACGATGGACAGGTGATCAGCGCGAACTCTTTCAAGCCG
ATTGAGCCAGTGAGCTCGTACGATAAGTTCCGGCTCATGCGACGCCTGAG
AAAGATCGGGGGCATCCTAATGACGCTGCACAATGTGCTCATGATGGGGG
CACCCTACGACTTGTTGGAGAAGATCTTCCGAAAGTGCTGCGTCAGGCAA
GTGGTGTATCTACTTGAAGGTAGCTAGCTGGCGCGTACATGCCTCGATTT
TTTTTTCATACTATTTTTAGTGACCTCAGCAATGCCAAGATACATGAAGG
TCAATCTTTCCGGTTTTGTTTGTAACTACCACCCTCATGTTTCGGTCAAA
GTTTATGGACATTTTTCTTGTAACCCCACCAGCCCCAGGAGGGTGTTATT
TCTGTGGTCCATCGCGCTGTATATATCTATCTGTATATATATATGTGTGT
GTGTCTGGTGTGTTGTTCAAATAAGAACATGGTGGCCATATAAACGACCG
TTTGGCTCTGAATGTATTGCGGTGTCCTACCCCCCCCCCCCCCCCCCCCC
CTACACACACACGCACACGCTCTCATCTCTGAACTAAGCTTTCATGCTTT
GCGGTGCGAATATTGGATACGGTGTTCAGCTGACAATGAACCAAGCTAGA
AGTTGGTGGTCAATCGATTAAAAGTGTATTTACGAAGAGCAAGAAACAAC
CATCCAACCAATGTGCGGGTCGAGAAGTTGATGTTATTTTTTTTTGTTTT
TTTTCACCGTGTTTAAAAAGAATGCGTGTTGATGTTCTATTGTGGTGTGT
TTTTCGCTGCCAACTAACCAACGTAATACAGAGTGAAGTACATCATTGCG
GACCAGCTGGCGGTGGAAGCCAAGCAAGAAGACGAGTCCGAATATGAGGG
TGGGGGTGGTACGTACACCGGCGGTGAGGAGGGGGAAGCTCCTTCAACAG
CAGCGGTGGCAGCAACAGCAGCAGGAGCATCGAGCAGCGTAGAAGAGTCT
AAGGGAAAATGAGAGTAATTTAGAGTTATTTGTTCTGATCGTCGAAGCCT
CAGCGTATGTATGTTTTTCTCTTCCGCCCCCCTCGCCCCTCTGGTTGGGT
GCTATGTTGTTTGCATAGGAGGATCGATTGGTACACTGCTCGGTATTGCC
ACCCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4439:10298..13454+

>mRNA_H-paniculata_contig4439.11215.1 ID=mRNA_H-paniculata_contig4439.11215.1|Name=mRNA_H-paniculata_contig4439.11215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig4439:10298..13454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACGCCTGAGAAAGATCGGGGGCATCCTAATGACGCTGCACAATGT
GCTCATGATGGGGGCACCCTACGACTTGTTGGAGAAGATCTTCCGAAAGT
GCTGCGTCAGATGCGACGCCTGAGAAAGATCGGGGGCATCCTAATGACGC
TGCACAATGTGCTCATGATGGGGGCACCCTACGACTTGTTGGAGAAGATC
TTCCGAAAGTGCTGCGTCAGAGTGAAGTACATCATTGCGGACCAGCTGGC
GGTGGAAGCCAAGCAAGAAGACGAGTCCGAATATGAGGGTGGGGGTGGTA
CGTACACCGGCGGTGAGGAGGGGGAAGCTCCTTCAACAGCAGCGGTGGCA
GCAACAGCAGCAGGAGCATCGAGCAGCGTAGAAGAGTCTAAGGGAAAATG
AAGTGAAGTACATCATTGCGGACCAGCTGGCGGTGGAAGCCAAGCAAGAA
GACGAGTCCGAATATGAGGGTGGGGGTGGTACGTACACCGGCGGTGAGGA
GGGGGAAGCTCCTTCAACAGCAGCGGTGGCAGCAACAGCAGCAGGAGCAT
CGAGCAGCGTAGAAGAGTCTAAGGGAAAATGA
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