mRNA_H-paniculata_contig44388.11213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44388.11213.1
Unique NamemRNA_H-paniculata_contig44388.11213.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A6H5K2I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2I1_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.630e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            +Q+ER+  T E PSMEGLFPTGEGAGYAGGIVSAAVDG+RVG SVA QVLS
Sbjct:   22 VQVERNADTLECPSMEGLFPTGEGAGYAGGIVSAAVDGIRVGQSVAMQVLS 72
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.440e-17
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            +Q+ER+  T E PSMEGLFPTGEGAGYAGGIVSAAVDG+RVG SVA QVLS
Sbjct:  609 VQVERNADTLECPSMEGLFPTGEGAGYAGGIVSAAVDGIRVGQSVAMQVLS 659
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A8JI31_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JI31_CHLRE)

HSP 1 Score: 72.0 bits (175), Expect = 1.980e-13
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            ++++RDP T +S +M GLFP GEGAGYAGGI+SAAVDGLRVG +VAA +L+
Sbjct:  407 VRMDRDPTTCQSVTMPGLFPAGEGAGYAGGIMSAAVDGLRVGEAVAAHLLA 457
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A2K3CS05_CHLRE (FAD_binding_2 domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CS05_CHLRE)

HSP 1 Score: 72.0 bits (175), Expect = 2.020e-13
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            ++++RDP T +S +M GLFP GEGAGYAGGI+SAAVDGLRVG +VAA +L+
Sbjct:  822 VRMDRDPTTCQSVTMPGLFPAGEGAGYAGGIMSAAVDGLRVGEAVAAHLLA 872
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A835SS73_CHLIN (FAD_binding_2 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SS73_CHLIN)

HSP 1 Score: 71.6 bits (174), Expect = 2.760e-13
Identity = 35/51 (68.63%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            ++++RD AT +S SM GLFP GEGAGYAGGI+SAAVDGLRVG +VAA +L+
Sbjct:  720 VRMDRDTATCQSVSMPGLFPAGEGAGYAGGIMSAAVDGLRVGEAVAAHLLA 770
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A836BX60_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BX60_9CHLO)

HSP 1 Score: 71.2 bits (173), Expect = 3.780e-13
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVLS 153
            ++I+RDP +F+S S  GLFPTGEGAGYAGGI+SAAVDGL+V A+V A +L+
Sbjct: 1099 VRIDRDPLSFQSLSTPGLFPTGEGAGYAGGIMSAAVDGLKVAAAVEAHLLA 1149
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A7R9YUZ6_9CHLO (Hypothetical protein n=2 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YUZ6_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 4.870e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVL 150
            + IERD +T +S S+ GL+P GEGAGYAGGI+SAAVDGLRVG + AA +L
Sbjct:  127 VSIERDKSTLQSASLPGLYPCGEGAGYAGGIMSAAVDGLRVGGAAAAALL 176
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A1W9QE40_9DELT (Uncharacterized protein n=1 Tax=Sorangiineae bacterium NIC37A_2 TaxID=1970199 RepID=A0A1W9QE40_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVA 138
            ++I RDP++ E+P   GLFPTGEGAGYAGGIVSAAVDGLRV   VA
Sbjct:  482 VRITRDPSSLEAPKAAGLFPTGEGAGYAGGIVSAAVDGLRVAEKVA 527
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A6A3CFX3_HIBSY (Putative endonuclease or glycosyl hydrolase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3CFX3_HIBSY)

HSP 1 Score: 68.6 bits (166), Expect = 3.360e-12
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQ 144
            IQI RD AT+ES S+ GL+P GEGAGYAGGIVSAAVDG+  G SVA Q
Sbjct:  641 IQIPRDGATYESLSLRGLYPVGEGAGYAGGIVSAAVDGMYTGFSVAKQ 688
[Close]
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Match: A0A392QWB1_9FABA (FAD/NAD(P)-binding oxidoreductase-like protein (Fragment) n=2 Tax=Trifolium medium TaxID=97028 RepID=A0A392QWB1_9FABA)

HSP 1 Score: 63.5 bits (153), Expect = 4.530e-12
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVA 138
            IQI RD  ++ES S++GL+P GEGAGYAGGI+SAAVDG+  G +VA
Sbjct:    7 IQIPRDADSYESTSVKGLYPVGEGAGYAGGIISAAVDGMHAGFAVA 52
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44388.11213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2I1_9PHAE1.630e-1980.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIX4_ECTSI4.440e-1780.39FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A8JI31_CHLRE1.980e-1366.67Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A2K3CS05_CHLRE2.020e-1366.67FAD_binding_2 domain-containing protein n=1 Tax=Ch... [more]
A0A835SS73_CHLIN2.760e-1368.63FAD_binding_2 domain-containing protein n=1 Tax=Ch... [more]
A0A836BX60_9CHLO3.780e-1366.67Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7R9YUZ6_9CHLO4.870e-1366.00Hypothetical protein n=2 Tax=Chlamydomonas euryale... [more]
A0A1W9QE40_9DELT2.450e-1271.74Uncharacterized protein n=1 Tax=Sorangiineae bacte... [more]
A0A6A3CFX3_HIBSY3.360e-1272.92Putative endonuclease or glycosyl hydrolase n=2 Ta... [more]
A0A392QWB1_9FABA4.530e-1265.22FAD/NAD(P)-binding oxidoreductase-like protein (Fr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44388contigH-paniculata_contig44388:768..1414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D7FIX4
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.1289604-CDS-H-paniculata_contig44388:767..8381622930337.1289604-CDS-H-paniculata_contig44388:767..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44388 768..838 -
1691481247.310011-CDS-H-paniculata_contig44388:767..8381691481247.310011-CDS-H-paniculata_contig44388:767..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44388 768..838 -
1622930337.1488008-CDS-H-paniculata_contig44388:1329..14141622930337.1488008-CDS-H-paniculata_contig44388:1329..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44388 1330..1414 -
1691481247.3191288-CDS-H-paniculata_contig44388:1329..14141691481247.3191288-CDS-H-paniculata_contig44388:1329..1414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44388 1330..1414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44388.11213.1prot_H-paniculata_contig44388.11213.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44388 768..1414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44388.11213.1

>prot_H-paniculata_contig44388.11213.1 ID=prot_H-paniculata_contig44388.11213.1|Name=mRNA_H-paniculata_contig44388.11213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
IQIERDPATFESPSMEGLFPTGEGAGYAGGIVSAAVDGLRVGASVAAQVL
S*
back to top

mRNA from alignment at H-paniculata_contig44388:768..1414-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44388.11213.1 ID=mRNA_H-paniculata_contig44388.11213.1|Name=mRNA_H-paniculata_contig44388.11213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at H-paniculata_contig44388:768..1414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGATTGAACGGGATCCGGCTACCTTCGAGTCTCCTTCCATGGAGGG
GTTGTTCCCGACTGGAGAGGGTGCGGGGTACGCCGGTAAGCGCGGGGGGG
GGGGAATCGTCTTTGGATTTGTGCAGCACATGCGCATGCCCGCATCATAC
TGCAAATTATAATTTGCTAGAATACCCAGGAGCGATAGCATGTGTAGCAT
TCAGAGGACAGGATAGCGTTACGGTTGGGCAAAATAGACTCTTGAAGCTG
CTGGTAAGATAAAATATATCACACATTCCCCCTACCCCGCTGCTCCCCGG
GGTAGGTAAAATATTTTCGGACCACGTTTGGCACAGTAGGAATGAGCGAT
TGGCCATCAGAAATCGCACTTTTAGGAACAAGGCTCCGTCCTCCCGAGGA
TGCGTGGTCATTGGTCCCACAACCGTGACAGGCAAAATACGAGTGCGCCC
CCCATCCCTCTCCGCTCTTCCGCCTCCCGCCCCACCCGCTTTCGTGGTAT
TTTTGCTGTCTGCTTTTTCATATCTGTAACCCAAAATTGATTGCGGCGAT
GATTTTGTTTCGTTTTTGTTCAAAAGGTGGAATCGTGAGCGCGGCTGTCG
ACGGGCTTCGCGTGGGAGCTTCTGTAGCAGCGCAGGTTTTGTCCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44388:768..1414-

>mRNA_H-paniculata_contig44388.11213.1 ID=mRNA_H-paniculata_contig44388.11213.1|Name=mRNA_H-paniculata_contig44388.11213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig44388:768..1414- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCAGATTGAACGGGATCCGGCTACCTTCGAGTCTCCTTCCATGGAGGG
GTTGTTCCCGACTGGAGAGGGTGCGGGGTACGCCGATTCAGATTGAACGG
GATCCGGCTACCTTCGAGTCTCCTTCCATGGAGGGGTTGTTCCCGACTGG
AGAGGGTGCGGGGTACGCCGGTGGAATCGTGAGCGCGGCTGTCGACGGGC
TTCGCGTGGGAGCTTCTGTAGCAGCGCAGGTTTTGTCCTAGGTGGAATCG
TGAGCGCGGCTGTCGACGGGCTTCGCGTGGGAGCTTCTGTAGCAGCGCAG
GTTTTGTCCTAG
back to top