mRNA_H-paniculata_contig44373.11212.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44373.11212.1
Unique NamemRNA_H-paniculata_contig44373.11212.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44373.11212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44373contigH-paniculata_contig44373:173..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size894
Cds size891
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930337.0910702-CDS-H-paniculata_contig44373:172..10631622930337.0910702-CDS-H-paniculata_contig44373:172..1063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44373 173..1063 +
1691481247.3011665-CDS-H-paniculata_contig44373:172..10631691481247.3011665-CDS-H-paniculata_contig44373:172..1063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44373 173..1063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44373.11212.1prot_H-paniculata_contig44373.11212.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44373 173..1063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44373.11212.1

>prot_H-paniculata_contig44373.11212.1 ID=prot_H-paniculata_contig44373.11212.1|Name=mRNA_H-paniculata_contig44373.11212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
KLKPKAVRCYYIAPSPNRPSDSVRVFLKSGALIDSRDATWQCVSPVPTTV
PTISLPDNGEDSGGGEGGRKYEGTGNEEEKGSESCSSGSERGSDLSDRYD
SDSRKSDRTSSEEVLPGRHQSEETDSESERDQSRVGFVAHTAPATTPGLG
TATPPAKTSAVAPLDGRAATPSVFVGASLEAPTPVASIGGGSTPREVISS
LGSTDPSAWIEGSGINVHESPVPSSSDAGTGENASTPSLGGREAHRLEWT
AAGPTGIMPGRTRGDVARLHAAHSGALICADIGIEASVPEDFRKLQY
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mRNA from alignment at H-paniculata_contig44373:173..1065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44373.11212.1 ID=mRNA_H-paniculata_contig44373.11212.1|Name=mRNA_H-paniculata_contig44373.11212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=893bp|location=Sequence derived from alignment at H-paniculata_contig44373:173..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTAAAGCCGAAAGCTGTACGTTGTTATTACATAGCTCCTTCCCCCAA
CCGTCCGAGTGATTCTGTACGCGTGTTTTTGAAGAGTGGTGCTCTTATAG
ACAGTAGAGATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTA
CCAACGATTTCTCTGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGG
AGGGAGAAAGTACGAGGGTACCGGCAATGAGGAGGAAAAGGGGAGCGAGT
CTTGCAGCAGCGGGAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGAT
TCCGATAGCCGCAAGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGG
CCGCCATCAGTCAGAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAA
GGGTCGGCTTCGTGGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGG
ACTGCGACGCCGCCTGCAAAGACTTCGGCAGTTGCTCCGTTGGATGGGAG
GGCTGCCACACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACAC
CCGTCGCGTCGATAGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCT
CTGGGCAGTACTGATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGT
TCACGAGAGTCCGGTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATG
CATCCACCCCTTCTTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACA
GCGGCAGGACCGACGGGGATTATGCCGGGACGTACACGTGGTGATGTGGC
TAGGTTGCATGCTGCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGA
TCGAGGCTTCGGTGCCTGAGGATTTCCGGAAACTGCAGTACAC
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Coding sequence (CDS) from alignment at H-paniculata_contig44373:173..1065+

>mRNA_H-paniculata_contig44373.11212.1 ID=mRNA_H-paniculata_contig44373.11212.1|Name=mRNA_H-paniculata_contig44373.11212.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig44373:173..1065+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTAAAGCCGAAAGCTGTACGTTGTTATTACATAGCTCCTTCCCCCAA
CCGTCCGAGTGATTCTGTACGCGTGTTTTTGAAGAGTGGTGCTCTTATAG
ACAGTAGAGATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTA
CCAACGATTTCTCTGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGG
AGGGAGAAAGTACGAGGGTACCGGCAATGAGGAGGAAAAGGGGAGCGAGT
CTTGCAGCAGCGGGAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGAT
TCCGATAGCCGCAAGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGG
CCGCCATCAGTCAGAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAA
GGGTCGGCTTCGTGGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGG
ACTGCGACGCCGCCTGCAAAGACTTCGGCAGTTGCTCCGTTGGATGGGAG
GGCTGCCACACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACAC
CCGTCGCGTCGATAGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCT
CTGGGCAGTACTGATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGT
TCACGAGAGTCCGGTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATG
CATCCACCCCTTCTTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACA
GCGGCAGGACCGACGGGGATTATGCCGGGACGTACACGTGGTGATGTGGC
TAGGTTGCATGCTGCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGA
TCGAGGCTTCGGTGCCTGAGGATTTCCGGAAACTGCAGTACAAACTAAAG
CCGAAAGCTGTACGTTGTTATTACATAGCTCCTTCCCCCAACCGTCCGAG
TGATTCTGTACGCGTGTTTTTGAAGAGTGGTGCTCTTATAGACAGTAGAG
ATGCCACTTGGCAATGCGTTTCACCCGTCCCTACCACTGTACCAACGATT
TCTCTGCCAGATAATGGGGAGGATTCAGGAGGTGGGGAGGGAGGGAGAAA
GTACGAGGGTACCGGCAATGAGGAGGAAAAGGGGAGCGAGTCTTGCAGCA
GCGGGAGCGAGCGCGGGAGCGACCTCTCGGACCGCTACGATTCCGATAGC
CGCAAGTCCGATCGTACATCGTCCGAGGAGGTGCTGCCCGGCCGCCATCA
GTCAGAGGAGACCGACAGCGAGAGCGAGCGAGACCAGTCAAGGGTCGGCT
TCGTGGCGCACACGGCTCCCGCAACTACCCCTGGGCTGGGGACTGCGACG
CCGCCTGCAAAGACTTCGGCAGTTGCTCCGTTGGATGGGAGGGCTGCCAC
ACCGAGCGTTTTCGTGGGTGCCTCGTTGGAGGCGCCCACACCCGTCGCGT
CGATAGGCGGCGGGAGTACACCCAGGGAGGTAATAAGCTCTCTGGGCAGT
ACTGATCCGAGTGCTTGGATAGAAGGCTCGGGCATCAATGTTCACGAGAG
TCCGGTACCGTCATCCTCTGATGCAGGGACCGGTGAAAATGCATCCACCC
CTTCTTTAGGTGGGAGGGAAGCACACCGACTCGAGTGGACAGCGGCAGGA
CCGACGGGGATTATGCCGGGACGTACACGTGGTGATGTGGCTAGGTTGCA
TGCTGCCCACAGTGGGGCACTCATCTGCGCGGATATCGGGATCGAGGCTT
CGGTGCCTGAGGATTTCCGGAAACTGCAGTAC
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