prot_H-paniculata_contig44366.11210.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig44366.11210.1
Unique Nameprot_H-paniculata_contig44366.11210.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A6H5JJX4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.770e-9
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHLGVGR 61
            ++ R  A  +GV+K ++ RR+ G + +DA+VG  TVLSK KED +ED L++A+   L  GR
Sbjct:   23 LSLRAAAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKAKEDAVEDALIYASRHFLSFGR 83          
BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A6H5K6W6_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.420e-6
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 0
Query:    1 MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHL 57
            M+    A  +GVSK+S+ RR+ G   +DA+VG  TV++  +ED +ED LL+A   ++
Sbjct:  380 MSRNAAAAAYGVSKMSLSRRLSGECAMDARVGPGTVMTAAEEDALEDVLLYAGRNYI 436          
BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A1X7T9X0_AMPQE (HTH psq-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T9X0_AMPQE)

HSP 1 Score: 47.4 bits (111), Expect = 3.460e-5
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 0
Query:    4 RQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHLGVGR 61
            R+ A ++ V   ++ R + G V+ D + G PTVLS++KEDK+ + L+  A    GV R
Sbjct:   25 REAARLYNVPVETLRRMINGSVSADCKPGPPTVLSRDKEDKVAEYLITMADMGYGVNR 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJX4_9PHAE2.770e-944.26HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5K6W6_9PHAE3.420e-640.35HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A1X7T9X0_AMPQE3.460e-537.93HTH psq-type domain-containing protein n=1 Tax=Amp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44366contigH-paniculata_contig44366:4..186 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44366.11210.1mRNA_H-paniculata_contig44366.11210.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig44366 4..186 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig44366.11210.1 ID=prot_H-paniculata_contig44366.11210.1|Name=mRNA_H-paniculata_contig44366.11210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLL
WAAHRHLGVGR
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