mRNA_H-paniculata_contig44366.11210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44366.11210.1
Unique NamemRNA_H-paniculata_contig44366.11210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A6H5JJX4_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJX4_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.770e-9
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHLGVGR 183
            ++ R  A  +GV+K ++ RR+ G + +DA+VG  TVLSK KED +ED L++A+   L  GR
Sbjct:   23 LSLRAAAKAYGVNKDALSRRLSGAMAMDARVGPETVLSKAKEDAVEDALIYASRHFLSFGR 83
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BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A6H5K6W6_9PHAE (HTH psq-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.420e-6
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:    1 MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHL 171
            M+    A  +GVSK+S+ RR+ G   +DA+VG  TV++  +ED +ED LL+A   ++
Sbjct:  380 MSRNAAAAAYGVSKMSLSRRLSGECAMDARVGPGTVMTAAEEDALEDVLLYAGRNYI 436
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BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Match: A0A1X7T9X0_AMPQE (HTH psq-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T9X0_AMPQE)

HSP 1 Score: 47.4 bits (111), Expect = 3.460e-5
Identity = 22/58 (37.93%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:   10 RQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLLWAAHRHLGVGR 183
            R+ A ++ V   ++ R + G V+ D + G PTVLS++KEDK+ + L+  A    GV R
Sbjct:   25 REAARLYNVPVETLRRMINGSVSADCKPGPPTVLSRDKEDKVAEYLITMADMGYGVNR 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44366.11210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JJX4_9PHAE2.770e-944.26HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5K6W6_9PHAE3.420e-640.35HTH psq-type domain-containing protein n=1 Tax=Ect... [more]
A0A1X7T9X0_AMPQE3.460e-537.93HTH psq-type domain-containing protein n=1 Tax=Amp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44366contigH-paniculata_contig44366:4..186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.9791393-CDS-H-paniculata_contig44366:3..1861622930336.9791393-CDS-H-paniculata_contig44366:3..186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44366 4..186 -
1691481247.275849-CDS-H-paniculata_contig44366:3..1861691481247.275849-CDS-H-paniculata_contig44366:3..186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44366 4..186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44366.11210.1prot_H-paniculata_contig44366.11210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44366 4..186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44366.11210.1

>prot_H-paniculata_contig44366.11210.1 ID=prot_H-paniculata_contig44366.11210.1|Name=mRNA_H-paniculata_contig44366.11210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MAYRQVATVFGVSKISIERRVKGHVTVDAQVGQPTVLSKEKEDKIEDTLL
WAAHRHLGVGR
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mRNA from alignment at H-paniculata_contig44366:4..186-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44366.11210.1 ID=mRNA_H-paniculata_contig44366.11210.1|Name=mRNA_H-paniculata_contig44366.11210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=183bp|location=Sequence derived from alignment at H-paniculata_contig44366:4..186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTACCGCCAGGTTGCTACTGTATTTGGGGTCTCGAAAATCAGTAT
AGAACGCCGGGTGAAGGGCCACGTGACCGTTGATGCTCAAGTTGGACAAC
CCACCGTACTCTCCAAAGAGAAGGAAGATAAGATCGAAGACACGTTGTTG
TGGGCTGCGCATCGGCACTTGGGGGTGGGTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig44366:4..186-

>mRNA_H-paniculata_contig44366.11210.1 ID=mRNA_H-paniculata_contig44366.11210.1|Name=mRNA_H-paniculata_contig44366.11210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig44366:4..186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTACCGCCAGGTTGCTACTGTATTTGGGGTCTCGAAAATCAGTAT
AGAACGCCGGGTGAAGGGCCACGTGACCGTTGATGCTCAAGTTGGACAAC
CCACCGTACTCTCCAAAGAGAAGGAAGATAAGATCGAAGACACGTTGTTG
TGGGCTGCGCATCGGCACTTGGGGGTGGGTAGAATGGCCTACCGCCAGGT
TGCTACTGTATTTGGGGTCTCGAAAATCAGTATAGAACGCCGGGTGAAGG
GCCACGTGACCGTTGATGCTCAAGTTGGACAACCCACCGTACTCTCCAAA
GAGAAGGAAGATAAGATCGAAGACACGTTGTTGTGGGCTGCGCATCGGCA
CTTGGGGGTGGGTAGA
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