mRNA_H-paniculata_contig4433.11207.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4433.11207.1
Unique NamemRNA_H-paniculata_contig4433.11207.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4433.11207.1 vs. uniprot
Match: A0A6H5JC23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC23_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.040e-24
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 AGPGNYTTGNEPELLSESPSRRDFTFGTAARESLALMTSSPGVLYKVDGVFKDGPVGGKIL 183
            +GP NY TGNE ELLSESPSRRD TFGTAARES+ LMT+SPGVLY VDGVF++GPV GKIL
Sbjct:   72 SGPANYKTGNEYELLSESPSRRDITFGTAARESMHLMTASPGVLYNVDGVFRNGPVKGKIL 132
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BLAST of mRNA_H-paniculata_contig4433.11207.1 vs. uniprot
Match: D8LG21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG21_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.010e-23
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 AGPGNYTTGNEPELLSESPSRRDFTFGTAARESLALMTSSPGVLYKVDGVFKDGPVGGKIL 183
            +GP NY TGNE E+LSESPSRRD TFGTAARES+ LMT+SPGVLY VDGVF++GPV GKIL
Sbjct:  136 SGPANYKTGNEYEVLSESPSRRDITFGTAARESMDLMTASPGVLYNVDGVFRNGPVKGKIL 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4433.11207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC23_9PHAE1.040e-2480.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG21_ECTSI1.010e-2378.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4433contigH-paniculata_contig4433:10868..11669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue4.8e-19
Seed eggNOG ortholog2880.D8LG21
Hectar predicted targeting categoryother localisation
EggNOG OGs2DCNP@1,2S5KF@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004910.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.742462-CDS-H-paniculata_contig4433:10867..109831622930336.742462-CDS-H-paniculata_contig4433:10867..10983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4433 10868..10983 -
1691481247.217215-CDS-H-paniculata_contig4433:10867..109831691481247.217215-CDS-H-paniculata_contig4433:10867..10983Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4433 10868..10983 -
1622930336.7611587-CDS-H-paniculata_contig4433:11602..116691622930336.7611587-CDS-H-paniculata_contig4433:11602..11669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4433 11603..11669 -
1691481247.2268708-CDS-H-paniculata_contig4433:11602..116691691481247.2268708-CDS-H-paniculata_contig4433:11602..11669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4433 11603..11669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4433.11207.1prot_H-paniculata_contig4433.11207.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4433 10868..11669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4433.11207.1

>prot_H-paniculata_contig4433.11207.1 ID=prot_H-paniculata_contig4433.11207.1|Name=mRNA_H-paniculata_contig4433.11207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
AGPGNYTTGNEPELLSESPSRRDFTFGTAARESLALMTSSPGVLYKVDGV
FKDGPVGGKIL
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mRNA from alignment at H-paniculata_contig4433:10868..11669-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4433.11207.1 ID=mRNA_H-paniculata_contig4433.11207.1|Name=mRNA_H-paniculata_contig4433.11207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=802bp|location=Sequence derived from alignment at H-paniculata_contig4433:10868..11669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTCCGGGTAACTACACGACGGGGAATGAACCTGAGCTGCTGTCGGA
ATCTCCAAGCCGAAGAGGTGAGGCTCGGCTTGTTTCTCCTCTGCCTGTGT
TGTTTTGTTCGTTATGTTCGCATGCGTGTGTCATCTGCGACGAGGAAGAC
ATGGTTCAACTCTTCCTTTTCCTAGTACGAGTGGTGCTTGACTTTTTAGG
CCTGGCTGTGCTCGTGCTCCGTGAGAATACTTACCCAGCTCTCTGGGAAC
AGCATTTTTGCCTACCCTTTCCTAGAGAGGGAAACCTAACGAAAGCAAGA
ATATCTTTGTTCAAAATAGTAATCGATATTGTACAACACGACATCCACAA
TAGACGAGACGGGCTTGACATTTCCTCCGGAATTCCATGTACTCAATGTA
TCGATACTAGCCCACGCAGCTATTGACGATGAATCCTCACCTCTGAGGTG
TCCAGGTAGCCGAGACCACACACTTTGCTTTGGTGCCCTCGAGGTATTGT
TCGGCTTCAATTTGTGCCCGCATTCCAAGCTATGGACAATGACAAATACA
TCGGAGAATGGTGTCAAGCACCAAAGAAAACCAAGCTCACTTCTCGTCTG
ACCCTGTTTCGCACAATAACGTTCCGCCCGCGCATCCGCTCTTTTTTCAC
GTCTTGGCGGATCGCGGGGGGGGCGGTGGGGGGCAGACTTTACATTCGGA
ACAGCAGCACGAGAAAGCTTAGCCCTCATGACCAGCTCTCCGGGAGTTTT
ATACAAGGTCGATGGCGTGTTTAAGGACGGTCCGGTGGGGGGTAAAATTC
TG
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Coding sequence (CDS) from alignment at H-paniculata_contig4433:10868..11669-

>mRNA_H-paniculata_contig4433.11207.1 ID=mRNA_H-paniculata_contig4433.11207.1|Name=mRNA_H-paniculata_contig4433.11207.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4433:10868..11669- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGTCCGGGTAACTACACGACGGGGAATGAACCTGAGCTGCTGTCGGA
ATCTCCAAGCCGAAGAGGCGGGTCCGGGTAACTACACGACGGGGAATGAA
CCTGAGCTGCTGTCGGAATCTCCAAGCCGAAGAGACTTTACATTCGGAAC
AGCAGCACGAGAAAGCTTAGCCCTCATGACCAGCTCTCCGGGAGTTTTAT
ACAAGGTCGATGGCGTGTTTAAGGACGGTCCGGTGGGGGGTAAAATTCTG
ACTTTACATTCGGAACAGCAGCACGAGAAAGCTTAGCCCTCATGACCAGC
TCTCCGGGAGTTTTATACAAGGTCGATGGCGTGTTTAAGGACGGTCCGGT
GGGGGGTAAAATTCTG
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