mRNA_H-paniculata_contig44309.11201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44309.11201.1
Unique NamemRNA_H-paniculata_contig44309.11201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44309.11201.1 vs. uniprot
Match: A0A438GVH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GVH9_VITVI)

HSP 1 Score: 54.7 bits (130), Expect = 1.600e-6
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:    1 WIIDSGCTGHHLTPQCDLFQIFRQVVRCPIATAGKGKLDVEGQGDVEGLIWTAEGAICIIFC-NVFYVPEASDSILSVERMVSQGMEAYF 267
            W+IDSGCT H +TP+   F+   Q  +  +       +DV+G+G V     + E   CI +  +V +VPE S S+LSV +M+ +    +F
Sbjct:  291 WLIDSGCTNH-MTPELSYFKELDQSYKSKVKIGNGDLVDVKGKGVV-----SVETPTCIKYILDVLFVPEISQSLLSVGQMLEKNYSLHF 374
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44309.11201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A438GVH9_VITVI1.600e-634.44Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44309contigH-paniculata_contig44309:853..1143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.2174149-CDS-H-paniculata_contig44309:852..11431622930336.2174149-CDS-H-paniculata_contig44309:852..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44309 853..1143 -
1691481247.055667-CDS-H-paniculata_contig44309:852..11431691481247.055667-CDS-H-paniculata_contig44309:852..1143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44309 853..1143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44309.11201.1prot_H-paniculata_contig44309.11201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44309 853..1143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44309.11201.1

>prot_H-paniculata_contig44309.11201.1 ID=prot_H-paniculata_contig44309.11201.1|Name=mRNA_H-paniculata_contig44309.11201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
WIIDSGCTGHHLTPQCDLFQIFRQVVRCPIATAGKGKLDVEGQGDVEGLI
WTAEGAICIIFCNVFYVPEASDSILSVERMVSQGMEAYFGSERRRLY
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mRNA from alignment at H-paniculata_contig44309:853..1143-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44309.11201.1 ID=mRNA_H-paniculata_contig44309.11201.1|Name=mRNA_H-paniculata_contig44309.11201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig44309:853..1143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAATTGATTCGGGCTGCACCGGACATCACCTGACCCCGCAATGCGA
CCTCTTCCAAATTTTTCGCCAGGTCGTACGTTGTCCCATTGCCACAGCGG
GCAAGGGGAAGTTAGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATT
TGGACTGCTGAAGGAGCCATTTGCATCATTTTCTGCAATGTATTTTATGT
ACCTGAAGCATCAGACAGTATTTTATCGGTTGAGCGGATGGTGAGCCAAG
GGATGGAGGCGTATTTTGGTTCGGAACGGAGACGGTTGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig44309:853..1143-

>mRNA_H-paniculata_contig44309.11201.1 ID=mRNA_H-paniculata_contig44309.11201.1|Name=mRNA_H-paniculata_contig44309.11201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig44309:853..1143- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGATAATTGATTCGGGCTGCACCGGACATCACCTGACCCCGCAATGCGA
CCTCTTCCAAATTTTTCGCCAGGTCGTACGTTGTCCCATTGCCACAGCGG
GCAAGGGGAAGTTAGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATT
TGGACTGCTGAAGGAGCCATTTGCATCATTTTCTGCAATGTATTTTATGT
ACCTGAAGCATCAGACAGTATTTTATCGGTTGAGCGGATGGTGAGCCAAG
GGATGGAGGCGTATTTTGGTTCGGAACGGAGACGGTTGTATTGGATAATT
GATTCGGGCTGCACCGGACATCACCTGACCCCGCAATGCGACCTCTTCCA
AATTTTTCGCCAGGTCGTACGTTGTCCCATTGCCACAGCGGGCAAGGGGA
AGTTAGATGTAGAGGGGCAAGGAGACGTGGAAGGTTTAATTTGGACTGCT
GAAGGAGCCATTTGCATCATTTTCTGCAATGTATTTTATGTACCTGAAGC
ATCAGACAGTATTTTATCGGTTGAGCGGATGGTGAGCCAAGGGATGGAGG
CGTATTTTGGTTCGGAACGGAGACGGTTGTAT
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