mRNA_H-paniculata_contig44300.11199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44300.11199.1
Unique NamemRNA_H-paniculata_contig44300.11199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44300.11199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44300contigH-paniculata_contig44300:336..1052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size537
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930336.0995185-CDS-H-paniculata_contig44300:337..7111622930336.0995185-CDS-H-paniculata_contig44300:337..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44300 338..711 -
1691481247.0115132-CDS-H-paniculata_contig44300:337..7111691481247.0115132-CDS-H-paniculata_contig44300:337..711Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44300 338..711 -
1622930336.1171167-CDS-H-paniculata_contig44300:892..10521622930336.1171167-CDS-H-paniculata_contig44300:892..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44300 893..1052 -
1691481247.0266914-CDS-H-paniculata_contig44300:892..10521691481247.0266914-CDS-H-paniculata_contig44300:892..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44300 893..1052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44300.11199.1prot_H-paniculata_contig44300.11199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44300 338..1052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44300.11199.1

>prot_H-paniculata_contig44300.11199.1 ID=prot_H-paniculata_contig44300.11199.1|Name=mRNA_H-paniculata_contig44300.11199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=178bp
SPVPTSQPVPPAVAPTSGPINLGTTPTPAASLPPAATTPTTTSPLLTASP
LGPGETNPPSSTTSPASTSQPVAPAVAPSSSPIDPGSTRAPNVSLSPTTP
TIRTPSPTTAGMANPTPSTVLPTISPLFPGETNPPSLTISPMLTTQPVRV
LTQTFAPNPPGVTRAPDATLSPVVVATP
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mRNA from alignment at H-paniculata_contig44300:336..1052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44300.11199.1 ID=mRNA_H-paniculata_contig44300.11199.1|Name=mRNA_H-paniculata_contig44300.11199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=717bp|location=Sequence derived from alignment at H-paniculata_contig44300:336..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGGTCCCGACGTCGCAGCCTGTGCCGCCAGCAGTAGCACCAACTTC
AGGTCCCATTAACCTTGGAACTACCCCCACACCGGCCGCCTCCCTGCCGC
CCGCCGCGACCACACCAACAACCACAAGTCCGCTCCTCACCGCTTCCCCT
CTTGGCCCAGGTGAGATCGATTCCCCCAGCTTCACGACATCGCTAATGCT
GACATCAAAACCTGTAGCACCAGTAGTAGTACGAACCCTAGCGCCCATTG
ACTTTAGAACTACCCGTGGGCCCACTGCAACCTCACCAACGACAACACTG
TCATCTACTGTTGTGCCTACCCGTTTTCCCTCTGGTCCCAGGTGAGACCA
ATCCGCCGAGCTCCACGACATCCCCGGCCTCGACGTCGCAGCCTGTGGCA
CCAGCAGTAGCACCAAGTTCATCCCCAATTGACCCTGGAAGCACCCGCGC
GCCTAATGTATCCCTGTCACCAACTACACCAACGATCAGAACCCCGTCCC
CTACCACCGCTGGCATGGCGAACCCCACGCCATCGACTGTTTTGCCCACT
ATTTCCCCCCTATTCCCAGGTGAGACCAATCCGCCAAGCTTGACGATATC
GCCGATGCTGACCACACAGCCTGTGCGAGTACTGACGCAAACCTTTGCCC
CCAATCCTCCAGGAGTAACCCGCGCACCCGATGCCACCCTTTCACCAGTT
GTTGTCGCCACGCCGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig44300:336..1052-

>mRNA_H-paniculata_contig44300.11199.1 ID=mRNA_H-paniculata_contig44300.11199.1|Name=mRNA_H-paniculata_contig44300.11199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig44300:336..1052- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCCGGTCCCGACGTCGCAGCCTGTGCCGCCAGCAGTAGCACCAACTTC
AGGTCCCATTAACCTTGGAACTACCCCCACACCGGCCGCCTCCCTGCCGC
CCGCCGCGACCACACCAACAACCACAAGTCCGCTCCTCACCGCTTCCCCT
CTTGGCCCAGTCGCCGGTCCCGACGTCGCAGCCTGTGCCGCCAGCAGTAG
CACCAACTTCAGGTCCCATTAACCTTGGAACTACCCCCACACCGGCCGCC
TCCCTGCCGCCCGCCGCGACCACACCAACAACCACAAGTCCGCTCCTCAC
CGCTTCCCCTCTTGGCCCAGGTGAGACCAATCCGCCGAGCTCCACGACAT
CCCCGGCCTCGACGTCGCAGCCTGTGGCACCAGCAGTAGCACCAAGTTCA
TCCCCAATTGACCCTGGAAGCACCCGCGCGCCTAATGTATCCCTGTCACC
AACTACACCAACGATCAGAACCCCGTCCCCTACCACCGCTGGCATGGCGA
ACCCCACGCCATCGACTGTTTTGCCCACTATTTCCCCCCTATTCCCAGGT
GAGACCAATCCGCCAAGCTTGACGATATCGCCGATGCTGACCACACAGCC
TGTGCGAGTACTGACGCAAACCTTTGCCCCCAATCCTCCAGGAGTAACCC
GCGCACCCGATGCCACCCTTTCACCAGTTGTTGTCGCCACGCCGGTGAGA
CCAATCCGCCGAGCTCCACGACATCCCCGGCCTCGACGTCGCAGCCTGTG
GCACCAGCAGTAGCACCAAGTTCATCCCCAATTGACCCTGGAAGCACCCG
CGCGCCTAATGTATCCCTGTCACCAACTACACCAACGATCAGAACCCCGT
CCCCTACCACCGCTGGCATGGCGAACCCCACGCCATCGACTGTTTTGCCC
ACTATTTCCCCCCTATTCCCAGGTGAGACCAATCCGCCAAGCTTGACGAT
ATCGCCGATGCTGACCACACAGCCTGTGCGAGTACTGACGCAAACCTTTG
CCCCCAATCCTCCAGGAGTAACCCGCGCACCCGATGCCACCCTTTCACCA
GTTGTTGTCGCCACGCCG
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