mRNA_H-paniculata_contig4430.11197.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4430.11197.1
Unique NamemRNA_H-paniculata_contig4430.11197.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4430.11197.1 vs. uniprot
Match: D7G8J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8J3_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 7.740e-109
Identity = 171/271 (63.10%), Postives = 210/271 (77.49%), Query Frame = 1 
Query:    1 MTDRKIFDLFFGAREDDHDLCRRAYETGADINVGFEGKRSTKGGAGRWYYGDLQWYAPDGIDGVKNDTLLIIAIKVGNAKLVEWILSLDSLDATRTNARGLDALAVAKATDREHFLLGMA-----LPSPTTGGTAATTEATAGTEGADSLPRPSAGTNSDE---EIARLGNAIKMFKAQNDQKETEIAKAKKDCAAYQQMLLEKDASIGELQKTVLNKEREVIVMMHKIGQLEEALRNYTDFRQADADHYVQWGQADYHNAEGGEARSSDS 789
            MTDRKIFDLF+GARE+DHD+CRRAYETGADIN  F+G+R+TKGGAGRWYYGDLQWYAPDG+DG K DTLLIIA+K  N KLVEW+L+LD LD  + N +GL+A+AVAKA  RE+ LLGMA     LP    GG  A+ ++ A     ++ P P     +DE   E+ARL  A+KM KA ND+KE +I KA++DC AYQQML EKDA+IGELQK VL +E+EVIVM+HKIG+LEEALR YTDFRQADA+ Y  WG+AD+++AE G A ++ S
Sbjct:    1 MTDRKIFDLFYGARENDHDMCRRAYETGADINFAFDGRRATKGGAGRWYYGDLQWYAPDGVDGDKKDTLLIIAVKTNNVKLVEWMLTLDGLDTAKENGKGLNAMAVAKAIGRENLLLGMAACDDGLP----GGVDASAKSAASAADPNAPPLPPDKAAADEATMEVARLRTAMKMLKANNDEKEAKITKAQQDCQAYQQMLKEKDANIGELQKQVLEREKEVIVMLHKIGRLEEALREYTDFRQADAEQYTDWGRADHYDAENGGAGAAAS 267
[Close]
BLAST of mRNA_H-paniculata_contig4430.11197.1 vs. uniprot
Match: A0A836CH98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH98_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.240e-67
Identity = 125/257 (48.64%), Postives = 156/257 (60.70%), Query Frame = 1 
Query:    1 MTDRKIFDLFFGAREDDHDLCRRAYETGADINVGFEGKRSTKGGAGRWYYGDLQWYAPDGIDGVKNDTLLIIAIKVGNAKLVEWILSLDSLDATRTNARGLDALAVAKATDREHFLLGMALPSPTTGGTAATTEATAGTEGADSLPR------PSAGTNSDEEIARLGNAIKMFKAQNDQKETEIAKAKKDCAAYQQMLLEKDASIGELQKTVLNKEREVIVMMHKIGQLEEALRNYTDFRQADADHYVQWGQADYH 753
            MTDRK+FDLFFGARE D   C+ AYE GA++N  +EGK++T+G  GRWYYGDL W+APD +D  KN+TLL+IAIK  N  LV+W+L+LD LD T  N +G DA  VA    R   L  +A P P                     P       PS   ++ EEI R  NAIK+    ND KE E    K +    +Q++ EKDA+IGELQ TV +KERE+IVMMHK+ QL+  L  YTD RQ DA  + QWGQA +H
Sbjct:    1 MTDRKVFDLFFGAREGDLSACKAAYEAGANVNFQYEGKKATRGAGGRWYYGDLIWHAPDSVDANKNETLLMIAIKANNKPLVDWLLTLDRLDVTVRNIKGQDAFQVATEFGRSSMLTMVATPPPAPAAXXXXXXXXXXXXXXXXXPAAVTSAPPSVSADA-EEIKRQCNAIKLLTISNDTKEEENRALKAEVERCKQVIKEKDATIGELQNTVFSKEREMIVMMHKMEQLQATLAEYTDVRQGDAAVFEQWGQARFH 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4430.11197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8J3_ECTSI7.740e-10963.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH98_9STRA1.240e-6748.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4430contigH-paniculata_contig4430:8837..12101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003220.1
Exons4
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4430.11197.1prot_H-paniculata_contig4430.11197.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4430 8837..12101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930335.8519251-CDS-H-paniculata_contig4430:8836..90001622930335.8519251-CDS-H-paniculata_contig4430:8836..9000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 8837..9000 +
1691481246.8708215-CDS-H-paniculata_contig4430:8836..90001691481246.8708215-CDS-H-paniculata_contig4430:8836..9000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 8837..9000 +
1622930335.8911448-CDS-H-paniculata_contig4430:9219..95621622930335.8911448-CDS-H-paniculata_contig4430:9219..9562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 9220..9562 +
1691481246.8889105-CDS-H-paniculata_contig4430:9219..95621691481246.8889105-CDS-H-paniculata_contig4430:9219..9562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 9220..9562 +
1622930335.9081852-CDS-H-paniculata_contig4430:9913..100241622930335.9081852-CDS-H-paniculata_contig4430:9913..10024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 9914..10024 +
1691481246.8999994-CDS-H-paniculata_contig4430:9913..100241691481246.8999994-CDS-H-paniculata_contig4430:9913..10024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 9914..10024 +
1622930335.9260945-CDS-H-paniculata_contig4430:11921..121011622930335.9260945-CDS-H-paniculata_contig4430:11921..12101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 11922..12101 +
1691481246.9100053-CDS-H-paniculata_contig4430:11921..121011691481246.9100053-CDS-H-paniculata_contig4430:11921..12101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4430 11922..12101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4430.11197.1

>prot_H-paniculata_contig4430.11197.1 ID=prot_H-paniculata_contig4430.11197.1|Name=mRNA_H-paniculata_contig4430.11197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=266bp
MTDRKIFDLFFGAREDDHDLCRRAYETGADINVGFEGKRSTKGGAGRWYY
GDLQWYAPDGIDGVKNDTLLIIAIKVGNAKLVEWILSLDSLDATRTNARG
LDALAVAKATDREHFLLGMALPSPTTGGTAATTEATAGTEGADSLPRPSA
GTNSDEEIARLGNAIKMFKAQNDQKETEIAKAKKDCAAYQQMLLEKDASI
GELQKTVLNKEREVIVMMHKIGQLEEALRNYTDFRQADADHYVQWGQADY
HNAEGGEARSSDSGK*
back to top

mRNA from alignment at H-paniculata_contig4430:8837..12101+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4430.11197.1 ID=mRNA_H-paniculata_contig4430.11197.1|Name=mRNA_H-paniculata_contig4430.11197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3265bp|location=Sequence derived from alignment at H-paniculata_contig4430:8837..12101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGACAGGAAGATATTCGACCTATTCTTCGGGGCAAGGGAGGACGA
CCATGACTTATGCCGCAGGGCCTACGAGACTGGCGCAGATATCAACGTCG
GGTTTGAGGGAAAGCGCAGCACTAAAGGTGGAGCAGGGCGATGGTACTAC
GGAGACCTCCAGTGGTAAATTGGCCTGATTCATGGATTGAGAACAATCTT
CCCTTCCTCTGCGTAGCTCACAACTAAATGTTGCCACCAACCCATGTTAT
CTACAAACGTTCACGATGTGAGTATCACAGCTCATCGTGGCTATTGGCTT
TATTGAACTTCGATGACGTTTACCACTTGAACAACGTTCCATATACTCGA
AGTGTGGCACATACCATCGCACCGTTGACCCAGGTACGCTCCTGACGGAA
TAGATGGCGTGAAGAACGACACACTCCTCATCATCGCAATAAAAGTAGGA
AACGCAAAGCTAGTCGAGTGGATTCTCAGTCTTGACAGCTTAGACGCCAC
CAGGACCAACGCCAGAGGTTTGGATGCGTTGGCCGTGGCGAAAGCCACCG
ATCGAGAGCACTTTCTCCTGGGTATGGCGCTACCATCACCAACGACAGGT
GGCACGGCTGCAACGACTGAGGCAACAGCGGGAACGGAGGGTGCAGACTC
CCTCCCTCGTCCTTCAGCTGGAACGAACAGCGACGAGGAAATCGCGAGGC
TAGGAAACGCGATCAAGATGTTCAAGGTGAGGGGATATGTCGGCATGTGG
ACACGAAGCACCGTGGAACGCTGTATTAATTCCTGGTTTAAGTATTTGGT
GTTTATTGCCGTTGGTCTCAGGTCTTTCGCCGAACTTTGTTCAGCAACCG
AATTTGATCTTGTCGAAACACGACACATAAAAAGTATGCACCAATGCAGC
AGCAACTGGACTACAACTGCAGTCAATATTGACCTGGCCTAAATGACTGT
TGCGCAAAAATATCATTGTCGTCCGACGTCGTTTGCTTCTGACCATCTTC
TCTGCTCCGCTTCGTGATAATTGGCAAAGTACTCGCCCCTCCCATCTAAA
AATGACCGTTGTCCGTCGATGATCCAGGCTCAAAACGACCAGAAGGAGAC
CGAGATAGCCAAAGCTAAAAAGGATTGTGCTGCTTACCAACAGATGCTTC
TAGAGAAGGATGCCAGTATAGGCGAACTACAGAAGACGGTGAGCCTTAAT
GGGCAGTAGTATTCACTAGGCTGTGTGAGTTAAAGGATGAAATAGCATGC
TGGCACGGCTTGGCCCCTGTGTTGTACCCCAATTTACAACAGACAACCAA
ATGGAACACACACGACAATTCTACTAGTAAAACAGAGCGAAGATGCTACC
ACTATGCCTTGAGATCGAGCTGGTTCCAGACTTCTATCCGTAAGGCCATG
TCTCAACGAAGCGCGAACAATTTCACTAACTCTTCTTACGAAGGTGGTGT
TTCTCTATGATTGATCAAATAAACTTGTGGCTACTCATAACAGCCTATTT
CCAATATAACCCAGGGTCCCCATCTCAAAGTTGGGTCCCCATTTCACCAA
TATGCTGTTTCATGCGGCAAATTCCGTTTTTTTGCGGAACAATGTCCTTC
TGCCGCGCTTTTTTATAGTGCCCAGGGCTTCTTGAGAAGTTATTTGATCT
CTATAGGTACTAAAATATATATTGAAAGGCTCATGATAGGAAGAAGTTGC
GATTAAGAACATAGGTGTCGACAAAGGGCTGAAGGCGGTGAATTACGAAG
CGGGATAAGGAAAGCAGCACAGTAAAGGACAAATAGGGATCGTGGCCGTT
AGAAGCTCGACTCTCCCTGGTAGAACATAACATATCTCGGGTCATCATTC
GTCATTATCTTTACATCATATACTTGGTTAGGATATAATCAGTCCATATA
TATATATATATATATATATATATATATATATATATAGCTTAATGTTGATA
GAGCCAGGTGGTTTCCTCCTATATGCGGTCTCCAATGTCTTGGTCTCGGT
TTCCTCCTGATGACGCGGAAACCTCCATGAATAGCGTCGTTTTCTCAAGT
AGATTTGGGCATGGAGAGATCGAACAAGGTACCTGACAGACTTGTTGTGG
CCTTGGTGTGCTAGATTCTGTGAGCACTCTTCAGATTCTCTCGAGGGGTG
ATGAAGATCGAACAGGCTTTGCCTGGGAAACGAATAGGCTTCGGGCAAAG
TGTCACCATTGACCGGTCTAAATGACCGAAGCATAATCGCATCTTCATGT
TGTACATATGTAACGTAAGATCTATGACGGTCCAGAAAAAAGTTTAGTCT
GCACAGGAAGAATAGATACTCGGTGTCTACGTCTTGTTTTAGAAATTTCT
GCCAGGTATAGAGTCATCCTACGGTAGGGTTACTTGTTTAACGACTGCCG
CTTCGCAAAAAGGCGGTGTAAAAATAACGTAAATTAAACCATGTCAATTG
CATGTATTTGTGCATCCCCGAATGTGCACAGCCCACAAGTTGAAATGAGA
ATTCTGTTGAAGGGGGACAAAAAAACAAAAACGAATGCCCGATCCTGTTC
TCAAAGCGGCTCCTTCGTTAAACAAAGCGGCTCAAATACCCCCCTCCCCT
ACCGTAAGATAACTCTGTATGGTATTTTTCACTCCCCCAGTGTTTGAAAC
CTGCTTGACTCAATGACAGCTCAACGGTCAAATAAGTACGAACCTTGACA
TGTATGTCTGAAAAGATCGCCGTTACTCCTCCGAACTCGAACACGATGAG
TTTGTATCTGAATCGAGTTCATTCTCATAACCACAGAGAAATTGGTTTGT
TTCATAGTAACCCATCTATTTTTTTGTGCTTCGTTGAGACGCGGCCTAAG
CAAATTCTAACGGCTGGCTCGTGAACCTAGGAGAATCATTTCCCCCACAC
GGCGTTGCTGTACTATTCACTCGTTCATAGATAGCCTGAAAAATTGAACG
ATAGACGATTACAGCAACCTCAGGCCTTCCTACATAACCTCCAAGTCGCG
GACATCCTTCAACACGGTGTAATGAAAAGCATGCAGACACGGTTCCCTGA
CCGTTGTTGTTGTCATGCCTTCATTGCCAAGGTAGGTATTGAACAAGGAG
AGAGAAGTCATCGTGATGATGCACAAGATAGGTCAGCTGGAGGAGGCCCT
GAGAAACTACACGGACTTCCGCCAAGCCGACGCGGATCACTACGTGCAGT
GGGGGCAGGCGGATTATCACAATGCAGAAGGCGGCGAAGCGCGGTCGTCG
GATTCGGGAAAGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4430:8837..12101+

>mRNA_H-paniculata_contig4430.11197.1 ID=mRNA_H-paniculata_contig4430.11197.1|Name=mRNA_H-paniculata_contig4430.11197.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at H-paniculata_contig4430:8837..12101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGACAGGAAGATATTCGACCTATTCTTCGGGGCAAGGGAGGACGA
CCATGACTTATGCCGCAGGGCCTACGAGACTGGCGCAGATATCAACGTCG
GGTTTGAGGGAAAGCGCAGCACTAAAGGTGGAGCAGGGCGATGGTACTAC
GGAGACCTCCAGTGATGACTGACAGGAAGATATTCGACCTATTCTTCGGG
GCAAGGGAGGACGACCATGACTTATGCCGCAGGGCCTACGAGACTGGCGC
AGATATCAACGTCGGGTTTGAGGGAAAGCGCAGCACTAAAGGTGGAGCAG
GGCGATGGTACTACGGAGACCTCCAGTGGTACGCTCCTGACGGAATAGAT
GGCGTGAAGAACGACACACTCCTCATCATCGCAATAAAAGTAGGAAACGC
AAAGCTAGTCGAGTGGATTCTCAGTCTTGACAGCTTAGACGCCACCAGGA
CCAACGCCAGAGGTTTGGATGCGTTGGCCGTGGCGAAAGCCACCGATCGA
GAGCACTTTCTCCTGGGTATGGCGCTACCATCACCAACGACAGGTGGCAC
GGCTGCAACGACTGAGGCAACAGCGGGAACGGAGGGTGCAGACTCCCTCC
CTCGTCCTTCAGCTGGAACGAACAGCGACGAGGAAATCGCGAGGCTAGGA
AACGCGATCAAGATGTTCAAGGTACGCTCCTGACGGAATAGATGGCGTGA
AGAACGACACACTCCTCATCATCGCAATAAAAGTAGGAAACGCAAAGCTA
GTCGAGTGGATTCTCAGTCTTGACAGCTTAGACGCCACCAGGACCAACGC
CAGAGGTTTGGATGCGTTGGCCGTGGCGAAAGCCACCGATCGAGAGCACT
TTCTCCTGGGTATGGCGCTACCATCACCAACGACAGGTGGCACGGCTGCA
ACGACTGAGGCAACAGCGGGAACGGAGGGTGCAGACTCCCTCCCTCGTCC
TTCAGCTGGAACGAACAGCGACGAGGAAATCGCGAGGCTAGGAAACGCGA
TCAAGATGTTCAAGGCTCAAAACGACCAGAAGGAGACCGAGATAGCCAAA
GCTAAAAAGGATTGTGCTGCTTACCAACAGATGCTTCTAGAGAAGGATGC
CAGTATAGGCGAACTACAGAAGACGGCTCAAAACGACCAGAAGGAGACCG
AGATAGCCAAAGCTAAAAAGGATTGTGCTGCTTACCAACAGATGCTTCTA
GAGAAGGATGCCAGTATAGGCGAACTACAGAAGACGGTATTGAACAAGGA
GAGAGAAGTCATCGTGATGATGCACAAGATAGGTCAGCTGGAGGAGGCCC
TGAGAAACTACACGGACTTCCGCCAAGCCGACGCGGATCACTACGTGCAG
TGGGGGCAGGCGGATTATCACAATGCAGAAGGCGGCGAAGCGCGGTCGTC
GGATTCGGGAAAGTAGGTATTGAACAAGGAGAGAGAAGTCATCGTGATGA
TGCACAAGATAGGTCAGCTGGAGGAGGCCCTGAGAAACTACACGGACTTC
CGCCAAGCCGACGCGGATCACTACGTGCAGTGGGGGCAGGCGGATTATCA
CAATGCAGAAGGCGGCGAAGCGCGGTCGTCGGATTCGGGAAAGTAG
back to top