mRNA_H-paniculata_contig443.11193.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig443.11193.1
Unique NamemRNA_H-paniculata_contig443.11193.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig443.11193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig443contigH-paniculata_contig443:8813..9202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size392
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930335.3645387-CDS-H-paniculata_contig443:8812..92021622930335.3645387-CDS-H-paniculata_contig443:8812..9202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig443 8813..9202 +
1691481246.673507-CDS-H-paniculata_contig443:8812..92021691481246.673507-CDS-H-paniculata_contig443:8812..9202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig443 8813..9202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig443.11193.1prot_H-paniculata_contig443.11193.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig443 8813..9202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig443.11193.1

>prot_H-paniculata_contig443.11193.1 ID=prot_H-paniculata_contig443.11193.1|Name=mRNA_H-paniculata_contig443.11193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
WCWCWVLEISTVSTLLLSFRVVFYMQSRNPTRDPMAVAKCYSLSVQKAKH
TSSALLSVPSTYYPISIIQCLLRKLMMLVIFFLRGAEPFELNISIKAFEI
QEIVGPQHIIVIPSHETSKRTYDTQKILF*
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mRNA from alignment at H-paniculata_contig443:8813..9202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig443.11193.1 ID=mRNA_H-paniculata_contig443.11193.1|Name=mRNA_H-paniculata_contig443.11193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig443:8813..9202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGTTGGTGTTGGGTACTCGAAATATCGACCGTGTCTACCTTATTGCT
TTCATTTCGCGTCGTTTTTTATATGCAGTCGCGCAATCCGACACGGGATC
CGATGGCTGTTGCGAAGTGCTACAGTCTGTCAGTGCAAAAAGCCAAGCAT
ACAAGCAGCGCATTGCTGTCAGTCCCCAGCACCTACTACCCGATATCCAT
TATCCAGTGTCTACTACGCAAATTGATGATGCTTGTCATTTTCTTCCTAC
GGGGGGCTGAACCTTTCGAGCTGAACATTTCGATAAAAGCTTTCGAAATA
CAAGAAATTGTGGGGCCTCAACACATTATTGTCATTCCTAGCCATGAGAC
ATCAAAACGCACCTACGACACACAAAAAATATTATTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig443:8813..9202+

>mRNA_H-paniculata_contig443.11193.1 ID=mRNA_H-paniculata_contig443.11193.1|Name=mRNA_H-paniculata_contig443.11193.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig443:8813..9202+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTGTTGGTGTTGGGTACTCGAAATATCGACCGTGTCTACCTTATTGCT
TTCATTTCGCGTCGTTTTTTATATGCAGTCGCGCAATCCGACACGGGATC
CGATGGCTGTTGCGAAGTGCTACAGTCTGTCAGTGCAAAAAGCCAAGCAT
ACAAGCAGCGCATTGCTGTCAGTCCCCAGCACCTACTACCCGATATCCAT
TATCCAGTGTCTACTACGCAAATTGATGATGCTTGTCATTTTCTTCCTAC
GGGGGGCTGAACCTTTCGAGCTGAACATTTCGATAAAAGCTTTCGAAATA
CAAGAAATTGTGGGGCCTCAACACATTATTGTCATTCCTAGCCATGAGAC
ATCAAAACGCACCTACGACACACAAAAAATATTATTCTAATGGTGTTGGT
GTTGGGTACTCGAAATATCGACCGTGTCTACCTTATTGCTTTCATTTCGC
GTCGTTTTTTATATGCAGTCGCGCAATCCGACACGGGATCCGATGGCTGT
TGCGAAGTGCTACAGTCTGTCAGTGCAAAAAGCCAAGCATACAAGCAGCG
CATTGCTGTCAGTCCCCAGCACCTACTACCCGATATCCATTATCCAGTGT
CTACTACGCAAATTGATGATGCTTGTCATTTTCTTCCTACGGGGGGCTGA
ACCTTTCGAGCTGAACATTTCGATAAAAGCTTTCGAAATACAAGAAATTG
TGGGGCCTCAACACATTATTGTCATTCCTAGCCATGAGACATCAAAACGC
ACCTACGACACACAAAAAATATTATTCTAA
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