mRNA_H-paniculata_contig44276.11190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44276.11190.1
Unique NamemRNA_H-paniculata_contig44276.11190.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: D8LK14_ECTSI (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK14_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.300e-44
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRGHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VERDRGITVKAQTASMLH GHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVD+TQGVQAQTLSTAKAA AAGL LVPVVTKIDL HANV+
Sbjct:  110 VERDRGITVKAQTASMLHDGHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDATQGVQAQTLSTAKAAQAAGLKLVPVVTKIDLHHANVE 200
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A7S1CPS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPS2_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.720e-37
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLH------RGHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASM+H        +LLNLIDTPGHVDFSYEV RSL+ACQGALLLVD TQGVQAQT++   AA  AGLT+VPV+TK+DLP A+ +
Sbjct:   11 VERERGITVKAQTASMMHTDPVTGEDYLLNLIDTPGHVDFSYEVSRSLAACQGALLLVDCTQGVQAQTIANYHAARTAGLTIVPVLTKVDLPTADPE 107
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A836CPP8_9STRA (Translation factor GUF1 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPP8_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.070e-36
Identity = 73/92 (79.35%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRG-HLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASML++G +LLNLIDTPGHVDFSYEVVRSLS+CQGALLLVD+TQGVQAQTL+T +AA  AG+ ++PVVTKIDLP+A V+
Sbjct:  114 VERERGITVKAQTASMLYQGEYLLNLIDTPGHVDFSYEVVRSLSSCQGALLLVDATQGVQAQTLTTFRAAQEAGIKVLPVVTKIDLPNAQVE 205
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A3R6VMS1_9STRA (Tr-type G domain-containing protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6VMS1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 7.780e-35
Identity = 65/97 (67.01%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRG------HLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASML+        +LLNL+DTPGHVDFSYEV RSLSAC+G LLLVD++QG+Q+QTL+T  AA   GL +VPV+TKID+PHA  +
Sbjct:   29 VERERGITVKAQTASMLYEDKLSNTRYLLNLVDTPGHVDFSYEVSRSLSACEGVLLLVDASQGIQSQTLATYHAAKEKGLQVVPVLTKIDMPHAQPE 125
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A6H5KYX2_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX2_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 2.000e-34
Identity = 80/131 (61.07%), Postives = 82/131 (62.60%), Query Frame = 1 
Query:   16 GITVKAQTASMLHRGHLLNLIDTPGHVDFSYE---------------------------------------------VVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            GITVKAQTASMLH GHLLNLIDTPGHVDFSYE                                             VVRSLSACQGALLLVD+TQGVQAQTLSTAKAA AAGL LVPVVTKIDL HANV+
Sbjct:  146 GITVKAQTASMLHDGHLLNLIDTPGHVDFSYERYLTCSLVLLEGDDVHSDRKPELAATAILHVRNETTSPNAFVCDKVVRSLSACQGALLLVDATQGVQAQTLSTAKAAQAAGLKLVPVVTKIDLHHANVE 276
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A2P4X6F8_9STRA (GTP-binding protein LepA (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6F8_9STRA)

HSP 1 Score: 126 bits (317), Expect = 3.810e-34
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRG------HLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASM+HR        +LNL+DTPGHVDFSYEV RSLSAC+G LLLVD +QG+QAQTL+T  AA    L +VPV+TKID+PHA VD
Sbjct:   98 VERERGITVKAQTASMVHRDPKTGETFMLNLVDTPGHVDFSYEVNRSLSACEGVLLLVDCSQGIQAQTLATYYAAKERDLHVVPVLTKIDMPHAEVD 194
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A7S2RTM0_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RTM0_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.140e-33
Identity = 63/89 (70.79%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRGHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHAN 267
            VER+RGITVKA+TASML  GHL+NL+DTPGHVDF YEV RSL +CQGALLLVD+TQGVQAQTL+   +A   GL ++PV+TK+DLPH++
Sbjct:  129 VERERGITVKARTASMLFDGHLINLVDTPGHVDFDYEVKRSLKSCQGALLLVDATQGVQAQTLANYNSAKDCGLEIIPVLTKMDLPHSD 217
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A662XK90_9STRA (Tr-type G domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XK90_9STRA)

HSP 1 Score: 129 bits (325), Expect = 2.690e-33
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHR------GHLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASM+HR       +LLNL+DTPGHVDFSYEV RSLSAC+G LLLVD +QG+QAQTL+T  AA    L +VPV+TKID+PHA VD
Sbjct:  127 VERERGITVKAQTASMVHRDPETGRAYLLNLVDTPGHVDFSYEVNRSLSACEGVLLLVDCSQGIQAQTLATYYAAKERNLRVVPVLTKIDMPHAQVD 223
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: W7TE65_9STRA (Translation factor GUF1 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TE65_9STRA)

HSP 1 Score: 130 bits (326), Expect = 4.010e-33
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRG------HLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASM++R       +LLNL+DTPGHVDF+YEV RSLSACQGALLLVD+TQG+QAQTLST   A  A L+++PVVTK DLPHA  D
Sbjct:  115 VERERGITVKAQTASMVYRHPKDGKEYLLNLVDTPGHVDFAYEVSRSLSACQGALLLVDATQGIQAQTLSTYAFAQEAKLSIIPVVTKSDLPHAQTD 211
[Close]
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Match: A0A0P1AZH3_PLAHL (Gtp-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AZH3_PLAHL)

HSP 1 Score: 129 bits (324), Expect = 4.960e-33
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 VERDRGITVKAQTASMLHRG------HLLNLIDTPGHVDFSYEVVRSLSACQGALLLVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVD 273
            VER+RGITVKAQTASMLHR       ++LNL+DTPGHVDFSYEV RSLSAC+G LLLVD +QG+QAQTL+T  AA    L +VPV+TKID+PHA VD
Sbjct:   95 VERERGITVKAQTASMLHRDSITGMTYMLNLVDTPGHVDFSYEVNRSLSACEGVLLLVDCSQGIQAQTLATYYAAKERNLHVVPVLTKIDMPHAEVD 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44276.11190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK14_ECTSI1.300e-4493.41Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A7S1CPS2_9STRA2.720e-3771.13Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A836CPP8_9STRA1.070e-3679.35Translation factor GUF1 homolog, mitochondrial n=1... [more]
A0A3R6VMS1_9STRA7.780e-3567.01Tr-type G domain-containing protein (Fragment) n=1... [more]
A0A6H5KYX2_9PHAE2.000e-3461.07Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A2P4X6F8_9STRA3.810e-3469.07GTP-binding protein LepA (Fragment) n=1 Tax=Phytop... [more]
A0A7S2RTM0_9STRA1.140e-3370.79Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A662XK90_9STRA2.690e-3370.10Tr-type G domain-containing protein (Fragment) n=2... [more]
W7TE65_9STRA4.010e-3371.13Translation factor GUF1 homolog, mitochondrial n=2... [more]
A0A0P1AZH3_PLAHL4.960e-3370.10Gtp-binding protein n=1 Tax=Plasmopara halstedii T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44276contigH-paniculata_contig44276:132..798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.2e-38
Seed eggNOG ortholog2880.D8LK14
KEGG koko:K03596,ko:K21594
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
EggNOG free text desc.GTPase activity
EggNOG OGsCOG0481@1,KOG0462@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.9747283-CDS-H-paniculata_contig44276:131..2421622930334.9747283-CDS-H-paniculata_contig44276:131..242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44276 132..242 +
1691481246.5694382-CDS-H-paniculata_contig44276:131..2421691481246.5694382-CDS-H-paniculata_contig44276:131..242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44276 132..242 +
1622930334.9916825-CDS-H-paniculata_contig44276:624..7981622930334.9916825-CDS-H-paniculata_contig44276:624..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44276 625..798 +
1691481246.580915-CDS-H-paniculata_contig44276:624..7981691481246.580915-CDS-H-paniculata_contig44276:624..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44276 625..798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44276.11190.1prot_H-paniculata_contig44276.11190.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44276 132..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44276.11190.1

>prot_H-paniculata_contig44276.11190.1 ID=prot_H-paniculata_contig44276.11190.1|Name=mRNA_H-paniculata_contig44276.11190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
VERDRGITVKAQTASMLHRGHLLNLIDTPGHVDFSYEVVRSLSACQGALL
LVDSTQGVQAQTLSTAKAAAAAGLTLVPVVTKIDLPHANVDVRR*
back to top

mRNA from alignment at H-paniculata_contig44276:132..798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44276.11190.1 ID=mRNA_H-paniculata_contig44276.11190.1|Name=mRNA_H-paniculata_contig44276.11190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=667bp|location=Sequence derived from alignment at H-paniculata_contig44276:132..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGCGAGACCGAGGCATCACGGTGAAAGCGCAAACGGCCAGCATGCT
GCACCGTGGACATCTGTTGAACCTCATCGACACTCCCGGCCACGTAGACT
TCAGCTATGAGGTGCAAGAAAAACTGTACAATATTATTCTGCTATGTACA
AATACACATAGATATACATGAATAGAGCATGACTTTTTTGGGGGTTTTTT
GCTTTTGTGACGTGAAGGGCGGTTTTGTACTACTGTAGCCTCTTTTTCTC
CATATATATATTGTTATTGTGAAGATGGAGGCAAAATCATCCAAATAAAT
ATATGGTGCATTATATATTTAGACCTTCAGCCGTCCCAAGGCTTGAATAT
ACTTTGCTGCATTTGCCTCTTATTAGTATGACTGACTCGTTGATAGTACC
CAGAAGGGTACCGCCAACCGGCAGCCGTGGCTTGATTTTCGCGTCTATTC
GTTGTTTTTCGTATTTCCCCTTCGTAACTTCGTATTTGTGCAGGTTGTAC
GAAGTCTTTCCGCCTGTCAGGGAGCACTGCTATTGGTGGATTCTACGCAG
GGAGTGCAAGCGCAAACCCTATCCACCGCAAAAGCAGCAGCAGCCGCCGG
CCTTACACTTGTTCCCGTCGTGACCAAGATTGATCTTCCTCACGCAAACG
TGGATGTACGTCGGTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig44276:132..798+

>mRNA_H-paniculata_contig44276.11190.1 ID=mRNA_H-paniculata_contig44276.11190.1|Name=mRNA_H-paniculata_contig44276.11190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig44276:132..798+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGAGCGAGACCGAGGCATCACGGTGAAAGCGCAAACGGCCAGCATGCT
GCACCGTGGACATCTGTTGAACCTCATCGACACTCCCGGCCACGTAGACT
TCAGCTATGAGGTGGAGCGAGACCGAGGCATCACGGTGAAAGCGCAAACG
GCCAGCATGCTGCACCGTGGACATCTGTTGAACCTCATCGACACTCCCGG
CCACGTAGACTTCAGCTATGAGGTTGTACGAAGTCTTTCCGCCTGTCAGG
GAGCACTGCTATTGGTGGATTCTACGCAGGGAGTGCAAGCGCAAACCCTA
TCCACCGCAAAAGCAGCAGCAGCCGCCGGCCTTACACTTGTTCCCGTCGT
GACCAAGATTGATCTTCCTCACGCAAACGTGGATGTACGTCGGTAGGTTG
TACGAAGTCTTTCCGCCTGTCAGGGAGCACTGCTATTGGTGGATTCTACG
CAGGGAGTGCAAGCGCAAACCCTATCCACCGCAAAAGCAGCAGCAGCCGC
CGGCCTTACACTTGTTCCCGTCGTGACCAAGATTGATCTTCCTCACGCAA
ACGTGGATGTACGTCGGTAG
back to top