mRNA_H-paniculata_contig4427.11188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4427.11188.1
Unique NamemRNA_H-paniculata_contig4427.11188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Match: D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 2.060e-42
Identity = 92/140 (65.71%), Postives = 106/140 (75.71%), Query Frame = 1 
Query:  574 PTKTAVAQSVAPGIKVLPFEVREPSLGAVVVGQLVILEGSCYVWAAAEGSGMQGSLVAAVATRFDGGMPVATPLLAGMGSXXXXXXXXXXXXXXXXVSMAQRLCKRTGRVVFVSCDLPEDSQLLVAAVEGKVVKMLKADE 993
            PTK A +++V P +KV+ F+VREP+LGA VVG +V+L GSCYVWAA EGS  QGSL AAV TRFDGGMP ATPLLAG G+                VSMAQRLCKRTGRVVFVSCDL EDSQ+LVAAVE KVV +LKA++
Sbjct:  226 PTKDAGSEAVLPELKVVSFDVREPTLGASVVGHVVVLAGSCYVWAATEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGGGGVG-------VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 358
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BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Match: A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 4.130e-41
Identity = 89/140 (63.57%), Postives = 105/140 (75.00%), Query Frame = 1 
Query:  574 PTKTAVAQSVAPGIKVLPFEVREPSLGAVVVGQLVILEGSCYVWAAAEGSGMQGSLVAAVATRFDGGMPVATPLLAGMGSXXXXXXXXXXXXXXXXVSMAQRLCKRTGRVVFVSCDLPEDSQLLVAAVEGKVVKMLKADE 993
            PT+ A +++V P +K++ F+VREP+LGA VVG +V+L GSCYVWA  EGS  QGSL AAV TRFDGGMP ATPLLAG G+                VSMAQRLCKRTGRVVFVSCDL EDSQ+LVAAVE KVV +LKA++
Sbjct:  231 PTEDAGSEAVLPELKIVSFDVREPTLGASVVGHVVVLAGSCYVWATTEGSVAQGSLAAAVGTRFDGGMPTATPLLAGEGAGEAGEGGVG-------VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 363
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BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Match: A0A485KKL7_9STRA (Aste57867_8572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KKL7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.480e-9
Identity = 42/109 (38.53%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:  670 QLVILEGSCYVWAAAEGS-GMQGSLVAAVATRFDGGMPVATPLLAGMGSXXXXXXXXXXXXXXXXVSMAQRLCKRTGRVVFVSCDLPEDSQLLVAAVEGKVVKMLKADE 993
            Q+ +L  +C+VW   +GS    GS+  AV TR+D  +P+A+ L+ G G                   MAQRL  RTG+ VFVSC+LPED   L A VE ++V  L+ ++
Sbjct:   38 QIWLLPNACFVWIGLDGSPARMGSMSTAVKTRYDP-LPLASSLIGGSGDEVEQ-------------QMAQRLVLRTGKQVFVSCNLPEDDMELCAFVERQIVARLREEQ 132
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BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Match: A0A6G0WHC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHC5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.750e-6
Identity = 37/108 (34.26%), Postives = 57/108 (52.78%), Query Frame = 1 
Query:  670 QLVILEGSCYVWAAAEGSGMQ-GSLVAAVATRFDGGMPVATPLLAGMGSXXXXXXXXXXXXXXXXVSMAQRLCKRTGRVVFVSCDLPEDSQLLVAAVEGKVVKMLKAD 990
            Q+ +L  +C+VW   + + +  GS+  AV T++D  +P+A+ L+ G                     MAQRL  RTGR VFVSC+LP+D   L A +E  ++K L  +
Sbjct:   33 QIWLLANACFVWIGLDSTAVSLGSMSTAVKTKYDP-LPLASSLIGGGNEMEQ--------------QMAQRLVLRTGRQVFVSCNLPDDDMELGAFIERAIIKRLNQE 125
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BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Match: W4FSB2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSB2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.960e-5
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:  670 QLVILEGSCYVWAAAEGSGM-QGSLVAAVATRFDGGMPVATPLLAGMGSXXXXXXXXXXXXXXXXVSMAQRLCKRTGRVVFVSCDLPEDSQLLVAAVEGKVVKMLK 984
            Q+ +L  +C+VW   + + +  GS+  AV TR+D  +P+A+ LL G                     MAQRL  RTG+ VFVSC+LPED   L A VE  +++ L+
Sbjct:   38 QIWLLAHACFVWVGLDETPVCMGSMSTAVKTRYDP-LPLASSLLGGGADDTEQ-------------QMAQRLVLRTGKQVFVSCNLPEDDMELGAYVERAILQRLR 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4427.11188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G2Q5_ECTSI2.060e-4265.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9L5_9PHAE4.130e-4163.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A485KKL7_9STRA6.480e-938.53Aste57867_8572 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WHC5_9STRA4.750e-634.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FSB2_9STRA1.960e-536.79Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4427contigH-paniculata_contig4427:2500..5757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2013
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4427.11188.1prot_H-paniculata_contig4427.11188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4427 3505..5568 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.6371944-UTR-H-paniculata_contig4427:2499..35041622930334.6371944-UTR-H-paniculata_contig4427:2499..3504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4427 2500..3504 -
1691481246.424455-UTR-H-paniculata_contig4427:2499..35041691481246.424455-UTR-H-paniculata_contig4427:2499..3504Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4427 2500..3504 -
1622930334.7393825-UTR-H-paniculata_contig4427:5568..57571622930334.7393825-UTR-H-paniculata_contig4427:5568..5757Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4427 5569..5757 -
1691481246.472655-UTR-H-paniculata_contig4427:5568..57571691481246.472655-UTR-H-paniculata_contig4427:5568..5757Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4427 5569..5757 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930334.6816118-CDS-H-paniculata_contig4427:3504..42081622930334.6816118-CDS-H-paniculata_contig4427:3504..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 3505..4208 -
1691481246.434036-CDS-H-paniculata_contig4427:3504..42081691481246.434036-CDS-H-paniculata_contig4427:3504..4208Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 3505..4208 -
1622930334.7001584-CDS-H-paniculata_contig4427:5051..51621622930334.7001584-CDS-H-paniculata_contig4427:5051..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 5052..5162 -
1691481246.4430122-CDS-H-paniculata_contig4427:5051..51621691481246.4430122-CDS-H-paniculata_contig4427:5051..5162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 5052..5162 -
1622930334.7211416-CDS-H-paniculata_contig4427:5564..55681622930334.7211416-CDS-H-paniculata_contig4427:5564..5568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 5565..5568 -
1691481246.4569857-CDS-H-paniculata_contig4427:5564..55681691481246.4569857-CDS-H-paniculata_contig4427:5564..5568Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4427 5565..5568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4427.11188.1

>prot_H-paniculata_contig4427.11188.1 ID=prot_H-paniculata_contig4427.11188.1|Name=mRNA_H-paniculata_contig4427.11188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MEPTKSEEPEDMEIFDEQTSRDFDEQHMKDMEEAALTIQSRGWMGMAKAE
AKPSVAAAGQESQLPLMSPGRAIMGKLSAASSMFSRKKTDTAETEPVPPP
PPARIAATSMTAASAAAVAKTASTRTKNPTKTAVAQSVAPGIKVLPFEVR
EPSLGAVVVGQLVILEGSCYVWAAAEGSGMQGSLVAAVATRFDGGMPVAT
PLLAGMGSGGEGGGGGAGAGGGLGVSMAQRLCKRTGRVVFVSCDLPEDSQ
LLVAAVEGKVVKMLKADEAGSL*
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mRNA from alignment at H-paniculata_contig4427:2500..5757-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4427.11188.1 ID=mRNA_H-paniculata_contig4427.11188.1|Name=mRNA_H-paniculata_contig4427.11188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3258bp|location=Sequence derived from alignment at H-paniculata_contig4427:2500..5757- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTAGCACAGCACTACATTTGGGAGTTATCCTGGCCCCATCCCAAAAC
ATCCACCTTCCCTCCCTACATCATAATCTAAATTAAAAAAAAGGCTTCGT
CATTCGAAAATATGAATCCCGCCGCATTGTTTGACCTCATCCCGACTTTC
CTGTTCGTGTGAGGACAAGGCAACACATCCTACAGACACATGGGTAAGCT
TCTGTTCGTGGATTTCACTCCTGTCAACTAAGCTGCAGGTAGGATTAAGG
AAAATCAGGGTGATTCTAATAATTCCGTCTCCTAAAAGTACCGCTTCCGT
AACACAACAGTACAATAGTACAGACAGTGTAGACAATAGACCTCTTCTGC
AACAGACAAGGAGTCTCCAGACATCGCTGGAAGGTGAAAGATGTAAGCGT
ACACAAGTCTGTAAGTCACACAGAGAAGATAGAGATAGGTGGTCAGATGC
GATATTTTCTTTGCCAAACGCAAGCTATTTGCACAATGCATTCTCTTTTC
GCCTCATTTGTTTGCGCGTTAGCTTGCTCTGCCGCTTTTGTATAAACCAC
AGCCCTCCCCCCCCCAAAATTCCTCGTACTGCTGCCGTCCTTTAGAACCG
ACGAAATCTGAGGAACCTGAAGATATGGAGATTTTCGATGAGCAAACCTC
GCGGGATTTCGATGAGCAGCACATGAAAGATATGGAGGAGGCCGCTCTAA
CAATCCGTGAGTCAGAGGAACAGAGGCAGGGGGAGCGGCGGCGGACGGAC
TTCCATCACGGATGAGATGCGTCCAGTTTCAGGGAAAGCTTGATGTAGCT
AGAATCTGCAAACGATCGTGACTCGAACATTCCGACAATTTGGGACATCT
TGGCATCCTGGTCGCTATCAGTCACGTGTGATGTATCCTTTGGACGACAC
ACGACGAGAGCTGGAGTAATGTAGTGTAACGCACACATGTTCAATTCTAA
CCCAATTCAGGTGGCCAATTCTATTGCCGGAGTCAAGTTCGTGTTGCTCA
GTACAGCCACTTTGTTCCCTTGTAGTTCATGTATCGCAACAGTTTGTGTT
CTCCTGTACTCCAGATGCACATCAAACCCGATACGTTGTGTTTTCTGCAT
TGTTCATCTCAACGTTTGCTAGTCATCATTCCTTGTGCTGTTCTATGGCT
TGCACGTTTGGGGCGTTGCATTATTTGACTTCACTCCCGACTACCCACGG
TTTATTGGTATGTTGTGTTGCAGGTGATTTAGATGGGCTTAAGTCGTTGG
TACCGTTTGCCATCATCATCACGATGGAGAAGCCTCCGCCTTCGCCTCTA
ATTCTTGTTTAGCTTAATCCGTTCATCAGCGGTCACAATTTCGGGTCTTT
AGTATGCTTGTCGAGCAATGTTTTGTTCTAGCGGCAATATCGAGTTTAAA
CTGTTGAACCATACTAGAACCACCGGTCAAAAGGTTTGACACTCTTCCAA
CTGCCCTTCAATGACACGAAACCCGTTCGGTAAACCCGATTTCTTCGTTT
GTCTTTTCCGATCACGCACTCCATCGTTTGTCGTTCCAATTCCTCGAAGA
GTCACGAGGTTGGATGGGAATGGCCAAAGCGGAAGCGAAACCATCAGTAG
CAGCAGCGGGCCAGGAGTCACAGCTACCACTGATGTCACCGGGCAGGGCT
ATCATGGGAAAATTGTCTGCCGCTTCCTCCATGTTCTCGAGGAAGAAAAC
AGACACAGCCGAAACGGAACCGGTTCCGCCGCCTCCTCCCGCTAGGATAG
CGGCAACGTCGATGACGGCTGCATCGGCTGCTGCTGTAGCGAAAACTGCA
TCAACGAGAACAAAGAATCCTACAAAAACCGCGGTCGCGCAATCTGTTGC
TCCAGGAATCAAAGTCTTGCCGTTCGAAGTGCGAGAGCCGTCGCTAGGAG
CCGTGGTCGTGGGACAGCTAGTTATCCTAGAAGGATCTTGCTATGTTTGG
GCGGCAGCGGAGGGGTCTGGCATGCAGGGATCCCTCGTCGCAGCCGTGGC
AACGCGTTTCGATGGGGGTATGCCAGTTGCTACGCCTTTATTGGCGGGGA
TGGGGTCGGGGGGCGAGGGCGGAGGCGGAGGCGCAGGCGCAGGCGGGGGG
TTGGGCGTGAGCATGGCGCAGAGGCTGTGCAAGCGCACAGGCAGAGTAGT
GTTTGTGAGCTGTGATTTGCCCGAGGATTCGCAGCTGTTAGTGGCTGCCG
TGGAGGGGAAGGTCGTGAAGATGCTGAAAGCCGACGAAGCCGGAAGCTTA
TGACAAAATTTCGGATGTCTTGGATTTTGCTCCACCGATTCTATCCCATG
TTGTCGGTGCCGTCGGCGTCGAGCCTACCGCTGTTTTACCTGTGGCAGTT
GTACGGTATATATGGCCAAGACTTAATCGTTGGGTTGGTGCTACATACTA
TGCATCTAGTTTTGTAGAAATATAGAGAGGCCCTAGAGGTGAAACGAGAA
ACCCGTGTAGGATTTATACACAAGTGTCTCTGCATCAGTTATTTGTCTTT
TGTTACAGTTGTGAAGTGGGAGGAGGGAGCACACGGCGATGTTTGTGCGA
GGGACTGTGTTCAAGCCTGCTTTACTGTTTGGACGATGGACAGCGCCAAA
TTGATGCGACGATACGAAGACTGCGGCATTACTCCTAGTTTACTTTTTTC
GCGGTGCTTCCGACTCTTTCGCCGTTTACGATGTAGCACCCAGCAAGCCT
AGTCCGTGCTTTGTTGACGTTGCTGCTGATTCACGCACACCCTAACGAAC
TTGCGACATGGTAGCAAGCAGCCAATCGAAGCTCATTTGCAGGGGAGAGA
TGCTCCAGGGATCGCTGACATCTTCTAGAACGATTAATTGGCAGGACATG
TCACTGTTATGGATAGCTAGCTCCCTGTGGAGGAAGGGGACTATTTTTCA
ATATTAAGCGGTTCATCACAGTTATGGCATTAGCCACGGACGAGATGCGC
CGAGCGCGATGCAGAGTGGGGGAAACACCTTTGTGAGGGAAGTCCACCGA
GATACGTTGACCGAAGGGTGCGGAAAGGTGGATGGCAAGTTTTTACCCCC
CGACAAATACGAATACTTGATGTACTCGACACAAAAATTCAAAATTTTCT
GTTGAGTCTCAGATTGAGTTCTATTGTATCTGTCTCGGAGCGTCCACGAC
TGCTAATAATAATGGTACGTCAAGTAGACAGGGGTAGGTACTTTACTAGT
TGTGTCCGTTTATTCTGAAACTTTGGCGAATACACCAACTTCGGAGTGGT
GGGATGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig4427:2500..5757-

>mRNA_H-paniculata_contig4427.11188.1 ID=mRNA_H-paniculata_contig4427.11188.1|Name=mRNA_H-paniculata_contig4427.11188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig4427:2500..5757- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGGAACCGACGAAATCTGAGGAACCTGAAGATATGGAGATTTTCG
ATGAGCAAACCTCGCGGGATTTCGATGAGCAGCACATGAAAGATATGGAG
GAGGCCGCTCTAACAATCCAACCGACGAAATCTGAGGAACCTGAAGATAT
GGAGATTTTCGATGAGCAAACCTCGCGGGATTTCGATGAGCAGCACATGA
AAGATATGGAGGAGGCCGCTCTAACAATCCAGTCACGAGGTTGGATGGGA
ATGGCCAAAGCGGAAGCGAAACCATCAGTAGCAGCAGCGGGCCAGGAGTC
ACAGCTACCACTGATGTCACCGGGCAGGGCTATCATGGGAAAATTGTCTG
CCGCTTCCTCCATGTTCTCGAGGAAGAAAACAGACACAGCCGAAACGGAA
CCGGTTCCGCCGCCTCCTCCCGCTAGGATAGCGGCAACGTCGATGACGGC
TGCATCGGCTGCTGCTGTAGCGAAAACTGCATCAACGAGAACAAAGAATC
CTACAAAAACCGCGGTCGCGCAATCTGTTGCTCCAGGAATCAAAGTCTTG
CCGTTCGAAGTGCGAGAGCCGTCGCTAGGAGCCGTGGTCGTGGGACAGCT
AGTTATCCTAGAAGGATCTTGCTATGTTTGGGCGGCAGCGGAGGGGTCTG
GCATGCAGGGATCCCTCGTCGCAGCCGTGGCAACGCGTTTCGATGGGGGT
ATGCCAGTTGCTACGCCTTTATTGGCGGGGATGGGGTCGGGGGGCGAGGG
CGGAGGCGGAGGCGCAGGCGCAGGCGGGGGGTTGGGCGTGAGCATGGCGC
AGAGGCTGTGCAAGCGCACAGGCAGAGTAGTGTTTGTGAGCTGTGATTTG
CCCGAGGATTCGCAGCTGTTAGTGGCTGCCGTGGAGGGGAAGGTCGTGAA
GATGCTGAAAGCCGACGAAGCCGGAAGCTTATGAAGTCACGAGGTTGGAT
GGGAATGGCCAAAGCGGAAGCGAAACCATCAGTAGCAGCAGCGGGCCAGG
AGTCACAGCTACCACTGATGTCACCGGGCAGGGCTATCATGGGAAAATTG
TCTGCCGCTTCCTCCATGTTCTCGAGGAAGAAAACAGACACAGCCGAAAC
GGAACCGGTTCCGCCGCCTCCTCCCGCTAGGATAGCGGCAACGTCGATGA
CGGCTGCATCGGCTGCTGCTGTAGCGAAAACTGCATCAACGAGAACAAAG
AATCCTACAAAAACCGCGGTCGCGCAATCTGTTGCTCCAGGAATCAAAGT
CTTGCCGTTCGAAGTGCGAGAGCCGTCGCTAGGAGCCGTGGTCGTGGGAC
AGCTAGTTATCCTAGAAGGATCTTGCTATGTTTGGGCGGCAGCGGAGGGG
TCTGGCATGCAGGGATCCCTCGTCGCAGCCGTGGCAACGCGTTTCGATGG
GGGTATGCCAGTTGCTACGCCTTTATTGGCGGGGATGGGGTCGGGGGGCG
AGGGCGGAGGCGGAGGCGCAGGCGCAGGCGGGGGGTTGGGCGTGAGCATG
GCGCAGAGGCTGTGCAAGCGCACAGGCAGAGTAGTGTTTGTGAGCTGTGA
TTTGCCCGAGGATTCGCAGCTGTTAGTGGCTGCCGTGGAGGGGAAGGTCG
TGAAGATGCTGAAAGCCGACGAAGCCGGAAGCTTATGA
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