mRNA_H-paniculata_contig4423.11185.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI) HSP 1 Score: 276 bits (706), Expect = 4.970e-82 Identity = 134/190 (70.53%), Postives = 147/190 (77.37%), Query Frame = 2
Query: 53 SPDDIAQRVREMEEEILRKLLAEEDAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRCEPKCVCGMRLRFGDYTPGRACRLLHPWEHSPQC---------------------EDTWDPSDEQAARRFVAAVGAALGGARRAYETRVAPPTDSECSFSLETRRCEPQDLCRLRARWGDLTLSSACRL 559
SP+D+AQRVR+ME E++RKLLAEEDAKSLLDIWVE +E+VLT+TVPPTDA+CDFNWSRLRCEPKC CG RLRFGDYTPGRACRLLHPWE +P+ WDPSDE A RR VAA ALGG R+AYE RVAPP+DSECSFS ETRRCEPQ LCRLR RWGDLT SSACRL
Sbjct: 462 SPEDMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVDGDDXXXXXXXXXXXXXXXWDPSDEPAVRRVVAAAAGALGGLRQAYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 651
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE) HSP 1 Score: 275 bits (703), Expect = 3.260e-80 Identity = 133/191 (69.63%), Postives = 147/191 (76.96%), Query Frame = 2
Query: 53 SPDDIAQRVREMEEEILRKLLAEEDAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRCEPKCVCGMRLRFGDYTPGRACRLLHPWEHSPQC----------------------EDTWDPSDEQAARRFVAAVGAALGGARRAYETRVAPPTDSECSFSLETRRCEPQDLCRLRARWGDLTLSSACRL 559
SP+++AQRVR+ME E++RKLLAEEDAKSLLDIWVE +E+VLT+TVPPTDA+CDFNWSRLRCEPKC CG RLRFGDYTPGRACRLLHPWE +P+ WDPSDE A RR VAAV LGG R+AYE RVAPP+DSECSFS ETRRCEPQ LCRLR RWGDLT SSACRL
Sbjct: 626 SPEEMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVNGDDGXXXXXXXXXXXXXXAWDPSDEPAVRRVVAAVAGVLGGLRQAYEARVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRL 816
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: A0A7S2UXV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV6_9STRA) HSP 1 Score: 100 bits (248), Expect = 6.600e-21 Identity = 58/159 (36.48%), Postives = 80/159 (50.31%), Query Frame = 2
Query: 149 WVENAKEFVLT----KTVPPTDAQCDFNWSRLRCEPKCVCGMRLRFGDYTPGRACRLLHPWEHSPQCEDTWDPS---DEQAARRFVAAVGAALGGARRAYETRVAPPTDSECSF----SLETRR--CEPQDLCRLRARWGDLTLSSACRLTKNKDENST 586
W E + VLT K VP TD +C ++W RC+P+C C ++ +FGDY+PGRACR L E P C DPS D +F V +T + P TD +C F S ++RR C P C + ++GDLT+ ACR ++ ST
Sbjct: 31 WAEKISDKVLTFVNEKVVPDTDPECTWHWGHWRCDPQCECKLKYKFGDYSPGRACRSLTFGELDPNC----DPSAGDDISLLEKFGRVVVVTWRRVALFSKTYLLPRTDDQCQFAWKESWKSRRPTCSPHASCSFQPKFGDLTVGRACRYKYKEESKST 185
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: A0A6H5JPF6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPF6_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 8.640e-18 Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query: 125 DAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRCEPKCVCGMRLRFGDYTPGRACRLLHPWEHSPQCEDTWDPSDEQAARRFVAAVGAALGGARRAYETRVAPPTDSECSFSL----ETRR--CEPQDLCRLRARWGDLTLSSACRLTKNKDENSTAI 592
D ++LL+ ++V T+ P TD +CD++W R RC+P+C C + RFGDY PGR+CRL E D +D + A VG R V P TD +C FSL E ++ C P+ C ++GD+ +CRL +D++ T++
Sbjct: 91 DDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERGLATCDPERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRL---RDKSGTSV 249
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: A0A7R9ZJ95_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJ95_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 1.550e-11 Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 2
Query: 116 AEEDAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRCEPKCVCGMRLRFGDYTPGRACRLLHPWEHSPQCEDTWDPSDEQA 370
AE+D ++LLD++ E AKEF+ K +PPTD C ++W RCEP C C + GDY GR+CR + C++ DP+ QA
Sbjct: 96 AEQDDRTLLDVFGEAAKEFLTQKLIPPTDTDCRWDWRFARCEPFCACAFAPQRGDYHLGRSCRR----KTKVACDEPQDPTKVQA 176
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Match: A0A7S0CLR0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLR0_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.790e-6 Identity = 28/71 (39.44%), Postives = 41/71 (57.75%), Query Frame = 2
Query: 113 LAEEDAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRCEPKCVCG-----MRLRFGDYTPGRACRLL 310
L E+D ++ LD + E +K + +P TDA+CDF+W LRCEP +CG FGD+ GR+C +
Sbjct: 141 LDEDDERTYLDTFGEVSKIIMTHHVIPETDAECDFDWRSLRCEPHDICGGGGCRFEYEFGDFHLGRSCWIF 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4423.11185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4423.11185.1 >prot_H-paniculata_contig4423.11185.1 ID=prot_H-paniculata_contig4423.11185.1|Name=mRNA_H-paniculata_contig4423.11185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp MEEEILRKLLAEEDAKSLLDIWVENAKEFVLTKTVPPTDAQCDFNWSRLRback to top mRNA from alignment at H-paniculata_contig4423:3223..6228+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4423.11185.1 ID=mRNA_H-paniculata_contig4423.11185.1|Name=mRNA_H-paniculata_contig4423.11185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3006bp|location=Sequence derived from alignment at H-paniculata_contig4423:3223..6228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4423:3223..6228+ >mRNA_H-paniculata_contig4423.11185.1 ID=mRNA_H-paniculata_contig4423.11185.1|Name=mRNA_H-paniculata_contig4423.11185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig4423:3223..6228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |