mRNA_H-paniculata_contig44217.11181.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44217.11181.1
Unique NamemRNA_H-paniculata_contig44217.11181.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5JWA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.200e-15
Identity = 51/166 (30.72%), Postives = 74/166 (44.58%), Query Frame = 1
Query:   19 LVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLT-NRSGAPELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPITPDA 459
            L+VPGLGR++FS     + G+  + +   P L +    +PL +   D    +LD+T  ++  P      VP                   A  WHRRLG L  +SLD L+K    G  +  ++  C VC   K  Q  H   +  ++  P QLV  G MGP+ P A
Sbjct:  234 LIVPGLGRNIFSPTSLLKKGLRCVVEESTPRLTIQGNVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHLKQSTRELSRPGQLVVIGNMGPVNPPA 399          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.110e-14
Identity = 50/171 (29.24%), Postives = 75/171 (43.86%), Query Frame = 1
Query:    4 IQFSCLVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLT-NRSGAPELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPITPDA 459
            ++   L+VPGLGR++FS     + G+  + +   P L +    +PL +   D    +LD+T  ++  P      VP                   A  WHRRLG L  +SLD L+K       +  ++  C VC   K  Q  HP  +  ++  P QLV    MGP+ P A
Sbjct:  271 VRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPA 441          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5K9M6_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.940e-14
Identity = 50/171 (29.24%), Postives = 75/171 (43.86%), Query Frame = 1
Query:    4 IQFSCLVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLT-NRSGAPELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPITPDA 459
            ++   L+VPGLGR++FS     + G+  + +   P L +    +PL +   D    +LD+T  ++  P      VP                   A  WHRRLG L  +SLD L K       +  ++  C VC   K  Q  +P  +  ++  P QLV    MGP+TP A
Sbjct:   54 VRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLPIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILTKDTGTRVDYRDSLSPCGVCQIAKHKQSPYPKQSTRELSRPGQLVVIDNMGPVTPPA 224          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.810e-13
Identity = 51/182 (28.02%), Postives = 77/182 (42.31%), Query Frame = 1
Query:    4 IQFSCLVVPGLGRHLFSVE-----------KAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLT-NRSGAPELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPITPDA 459
            ++   L+VPGLGR++FS                + G+  + +   P L + +  +PL +   D    +LD+T  ++  P      VP                   A  WHRRLG L  +SLD L+K    G  +  ++  C VC   K  Q  HP  +  ++  P QLV    MGP+ P A
Sbjct:  312 VRIQGLIVPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPA 493          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5JSB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSB5_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.410e-13
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 1
Query:   19 LVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLTNRSGAPELAMQAVPDATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQL 372
            LVVPGLGR++FS     +NGV  + +  NP L V    LPL++ + D+ +   DL         A +A  +AT  HRRLG L  +S++ L+K++ +G      +  CD+CA  K  QL
Sbjct:  402 LVVPGLGRNVFSPTAQIKNGVKLVIEDGNPHLAVGGHILPLEQDSRDVVTADDDLG-------FAYEATVNATTLHRRLGYLNFRSMELLRKKEGHGVDSSDYMTTCDICAISKGRQL 512          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5K1K2_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 9.150e-6
Identity = 39/136 (28.68%), Postives = 56/136 (41.18%), Query Frame = 1
Query:   19 LVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLTNRSGA-PELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQ 369
            LVVPGLGR++FS     + G+  + +   P L +    +PL +   D    ++D+T    A P      VP                   A  WH+ LG L  +SLD L+K    G  +   +  C VC   K  Q
Sbjct:  269 LVVPGLGRNIFSPISLLKKGLPCVVEESPPHLTIQGKVIPLTQDPRDQGMCTVDITFEQNAQPSGTRSPVPHQKQSQTHTANAVCFTLVSADNWHKGLGHLNARSLDILRKDTGTGDDYRDNLSPCGVCQIAKHKQ 404          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A6H5K611_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K611_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.270e-5
Identity = 43/147 (29.25%), Postives = 65/147 (44.22%), Query Frame = 1
Query:    4 IQFSCLVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLT-NRSGAPELAMQAVP------------------DATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTT 387
            ++   L+VPGLGR++FS     + G+  + +   P L V +  +PL +   D    +LD+T  ++  P      VP                   A  WHRRLG L  +SLD L  R+H      G + +    A  + HQ  HP+T
Sbjct:   78 VRIQGLIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTVKDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILX-REHR-IRISGLLQEFSHQARVRRHQ--HPST 220          
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Match: A0A371G332_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371G332_MUCPR)

HSP 1 Score: 54.3 bits (129), Expect = 1.410e-5
Identity = 40/150 (26.67%), Postives = 64/150 (42.67%), Query Frame = 1
Query:   25 VPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQELASDLYSFSLDLTNRSGAPELAMQAVPDATLWHRRLGRLIRKSLDHLKKRDHNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPITPDALGGFK 474
            VP +  +L SV    + G  S F      L      +   +L   LY        +S +  L       ++LWH+RLG +  K L HL K+       D T   CD C   K H++A   ++  ++    + V T + GP+  +++GG K
Sbjct:  220 VPDIRLNLISVNALDEQGYNSHFGSKKWKLTKGAMIVAKGDLCCSLYKTRA----KSCSSSLNAAVGSLSSLWHKRLGHMSEKGLQHLAKKKLIPLQEDSTSEPCDHCVYGKQHRVAFKGSSS-RMSGVLERVRTYVCGPMEVESIGGAK 364          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44217.11181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JWA3_9PHAE3.200e-1530.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE1.110e-1429.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K9M6_9PHAE1.940e-1429.24gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KT84_9PHAE1.810e-1328.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSB5_9PHAE3.410e-1337.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K2_9PHAE9.150e-628.68CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K611_9PHAE1.270e-529.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A371G332_MUCPR1.410e-526.67Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44217contigH-paniculata_contig44217:483..956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score60.5
Seed ortholog evalue8.4e-07
Seed eggNOG ortholog6334.EFV57947
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930333.88483-CDS-H-paniculata_contig44217:482..9561622930333.88483-CDS-H-paniculata_contig44217:482..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44217 483..956 +
1691481246.1493871-CDS-H-paniculata_contig44217:482..9561691481246.1493871-CDS-H-paniculata_contig44217:482..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44217 483..956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44217.11181.1prot_H-paniculata_contig44217.11181.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44217 483..956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44217.11181.1

>prot_H-paniculata_contig44217.11181.1 ID=prot_H-paniculata_contig44217.11181.1|Name=mRNA_H-paniculata_contig44217.11181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=158bp
FIQFSCLVVPGLGRHLFSVEKAAQNGVASIFDMDNPGLEVNNFTLPLQEL
ASDLYSFSLDLTNRSGAPELAMQAVPDATLWHRRLGRLIRKSLDHLKKRD
HNGASFDGTVPDCDVCAGRKSHQLAHPTTADHKVKHPFQLVFTGLMGPIT
PDALGGFK
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mRNA from alignment at H-paniculata_contig44217:483..956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44217.11181.1 ID=mRNA_H-paniculata_contig44217.11181.1|Name=mRNA_H-paniculata_contig44217.11181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=474bp|location=Sequence derived from alignment at H-paniculata_contig44217:483..956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATCCAATTCTCGTGTCTGGTTGTACCTGGCTTGGGGCGCCACTTGTT CTCGGTAGAGAAAGCGGCGCAAAACGGCGTCGCGTCGATCTTCGATATGG ACAACCCTGGACTGGAAGTAAACAACTTCACCCTACCGCTTCAAGAGCTG GCGAGCGATCTCTACTCCTTCTCGCTCGATCTCACCAACAGGAGCGGCGC GCCAGAGCTGGCAATGCAAGCTGTGCCTGATGCCACCCTATGGCATCGGC GGCTTGGACGCCTCATCCGCAAGAGCCTGGACCATCTGAAGAAGAGGGAC CACAATGGGGCGAGCTTCGATGGGACCGTTCCGGATTGCGACGTCTGCGC CGGAAGGAAGAGCCACCAGCTGGCCCACCCCACGACGGCCGATCACAAGG TCAAGCACCCCTTCCAGCTGGTCTTCACAGGTCTGATGGGACCCATCACG CCGGACGCACTCGGGGGCTTTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig44217:483..956+

>mRNA_H-paniculata_contig44217.11181.1 ID=mRNA_H-paniculata_contig44217.11181.1|Name=mRNA_H-paniculata_contig44217.11181.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at H-paniculata_contig44217:483..956+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCATCCAATTCTCGTGTCTGGTTGTACCTGGCTTGGGGCGCCACTTGTT
CTCGGTAGAGAAAGCGGCGCAAAACGGCGTCGCGTCGATCTTCGATATGG
ACAACCCTGGACTGGAAGTAAACAACTTCACCCTACCGCTTCAAGAGCTG
GCGAGCGATCTCTACTCCTTCTCGCTCGATCTCACCAACAGGAGCGGCGC
GCCAGAGCTGGCAATGCAAGCTGTGCCTGATGCCACCCTATGGCATCGGC
GGCTTGGACGCCTCATCCGCAAGAGCCTGGACCATCTGAAGAAGAGGGAC
CACAATGGGGCGAGCTTCGATGGGACCGTTCCGGATTGCGACGTCTGCGC
CGGAAGGAAGAGCCACCAGCTGGCCCACCCCACGACGGCCGATCACAAGG
TCAAGCACCCCTTCCAGCTGGTCTTCACAGGTCTGATGGGACCCATCACG
CCGGACGCACTCGGGGGCTTTAAGTTCATCCAATTCTCGTGTCTGGTTGT
ACCTGGCTTGGGGCGCCACTTGTTCTCGGTAGAGAAAGCGGCGCAAAACG
GCGTCGCGTCGATCTTCGATATGGACAACCCTGGACTGGAAGTAAACAAC
TTCACCCTACCGCTTCAAGAGCTGGCGAGCGATCTCTACTCCTTCTCGCT
CGATCTCACCAACAGGAGCGGCGCGCCAGAGCTGGCAATGCAAGCTGTGC
CTGATGCCACCCTATGGCATCGGCGGCTTGGACGCCTCATCCGCAAGAGC
CTGGACCATCTGAAGAAGAGGGACCACAATGGGGCGAGCTTCGATGGGAC
CGTTCCGGATTGCGACGTCTGCGCCGGAAGGAAGAGCCACCAGCTGGCCC
ACCCCACGACGGCCGATCACAAGGTCAAGCACCCCTTCCAGCTGGTCTTC
ACAGGTCTGATGGGACCCATCACGCCGGACGCACTCGGGGGCTTTAAG
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