mRNA_H-paniculata_contig4419.11176.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4419.11176.1
Unique NamemRNA_H-paniculata_contig4419.11176.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4419.11176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4419contigH-paniculata_contig4419:4973..9080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size2148
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4419.11176.1prot_H-paniculata_contig4419.11176.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4419 4982..5992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.7442777-UTR-H-paniculata_contig4419:4972..49811622930332.7442777-UTR-H-paniculata_contig4419:4972..4981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 4973..4981 +
1691481245.5919685-UTR-H-paniculata_contig4419:4972..49811691481245.5919685-UTR-H-paniculata_contig4419:4972..4981Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 4973..4981 +
1622930332.8086143-UTR-H-paniculata_contig4419:5992..61281622930332.8086143-UTR-H-paniculata_contig4419:5992..6128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 5993..6128 +
1691481245.6332412-UTR-H-paniculata_contig4419:5992..61281691481245.6332412-UTR-H-paniculata_contig4419:5992..6128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 5993..6128 +
1622930332.8279378-UTR-H-paniculata_contig4419:6595..70131622930332.8279378-UTR-H-paniculata_contig4419:6595..7013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 6596..7013 +
1691481245.6488447-UTR-H-paniculata_contig4419:6595..70131691481245.6488447-UTR-H-paniculata_contig4419:6595..7013Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 6596..7013 +
1622930332.8434322-UTR-H-paniculata_contig4419:7353..74301622930332.8434322-UTR-H-paniculata_contig4419:7353..7430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 7354..7430 +
1691481245.6592598-UTR-H-paniculata_contig4419:7353..74301691481245.6592598-UTR-H-paniculata_contig4419:7353..7430Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 7354..7430 +
1622930332.8605704-UTR-H-paniculata_contig4419:7755..79671622930332.8605704-UTR-H-paniculata_contig4419:7755..7967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 7756..7967 +
1691481245.6687665-UTR-H-paniculata_contig4419:7755..79671691481245.6687665-UTR-H-paniculata_contig4419:7755..7967Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 7756..7967 +
1622930332.8781903-UTR-H-paniculata_contig4419:8137..84901622930332.8781903-UTR-H-paniculata_contig4419:8137..8490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 8138..8490 +
1691481245.6837687-UTR-H-paniculata_contig4419:8137..84901691481245.6837687-UTR-H-paniculata_contig4419:8137..8490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 8138..8490 +
1622930332.8944554-UTR-H-paniculata_contig4419:8668..90801622930332.8944554-UTR-H-paniculata_contig4419:8668..9080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 8669..9080 +
1691481245.6958847-UTR-H-paniculata_contig4419:8668..90801691481245.6958847-UTR-H-paniculata_contig4419:8668..9080Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 8669..9080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.7639775-CDS-H-paniculata_contig4419:4981..51901622930332.7639775-CDS-H-paniculata_contig4419:4981..5190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 4982..5190 +
1691481245.6050062-CDS-H-paniculata_contig4419:4981..51901691481245.6050062-CDS-H-paniculata_contig4419:4981..5190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 4982..5190 +
1622930332.7764788-CDS-H-paniculata_contig4419:5517..56461622930332.7764788-CDS-H-paniculata_contig4419:5517..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 5518..5646 +
1691481245.6126432-CDS-H-paniculata_contig4419:5517..56461691481245.6126432-CDS-H-paniculata_contig4419:5517..5646Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 5518..5646 +
1622930332.7922223-CDS-H-paniculata_contig4419:5799..59921622930332.7922223-CDS-H-paniculata_contig4419:5799..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 5800..5992 +
1691481245.6207287-CDS-H-paniculata_contig4419:5799..59921691481245.6207287-CDS-H-paniculata_contig4419:5799..5992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 5800..5992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4419.11176.1

>prot_H-paniculata_contig4419.11176.1 ID=prot_H-paniculata_contig4419.11176.1|Name=mRNA_H-paniculata_contig4419.11176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MRQVLAMSPHAFDALSDITHLPDREDNDKDLKSHPDGLHFGRVTSKSLLR
GEFKSMDPHEQETYIYRIASGKKTLFTGPEYEELDQAAKDVGRVVRSLEM
LVNRQDWSKRFRRFVHHARTWQASSTFVTHHLQVASEVLEHKEAVPAGTL
PDKNIVDFLLNQPWPSFLRVRVTGMQ*
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mRNA from alignment at H-paniculata_contig4419:4973..9080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4419.11176.1 ID=mRNA_H-paniculata_contig4419.11176.1|Name=mRNA_H-paniculata_contig4419.11176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4108bp|location=Sequence derived from alignment at H-paniculata_contig4419:4973..9080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACGTTATGAGACAAGTCTTGGCGATGTCGCCTCATGCTTTCGACGC
CCTCTCAGACATCACGCACCTCCCCGACCGCGAGGACAACGACAAAGACT
TGAAGTCACACCCGGATGGACTGCACTTCGGCCGCGTCACCTCCAAAAGC
CTGCTGCGCGGAGAGTTCAAGAGCATGGACCCACACGAACAAGAAACTTA
CATCTACCGCATCGCATCGTGAGTCTTACACATCAGATGAAAGGAGGAAC
TGTCTCAGTCCTAGTTCTGACGGCACCGTGATAAAGGGTCAGTATATTTG
GTTGTGACCGATCCTGTTGCGTTGCTGCTCTCTTCTCCGTGAATGGTAAG
ATGTGTTGCTTTGCAACGGTACTCCTGTGATGAAATGTTTGCTACTATGC
AGTCATCACGCAATACGCCTTGCGCTCAACTCGTTTCCTTACGTTGATTT
TTGTGAAGAATCAACAGCAGGGTAACCTAATGTGACCAACTCGTTAGTCT
CTCTCTCAATTTGTGTTGCTGCCCTCTCCTGTACCTCCAAACAAGCGGGA
AGAAGACCCTGTTTACGGGCCCCGAGTACGAGGAGCTTGATCAAGCAGCA
AAGGACGTCGGCCGCGTCGTTAGATCGCTGGAGATGCTCGTGAACCGACA
GGACTGGAGCAAACGATTTCGTCGGTGAGTCACCTTTCGTCGGGACTCCG
ACTTCTTTGGGGAATTTTTGGAGCGCTGGGGTTCTTGGGTATGACCGGTC
ATGCCATTCTGCGCCGCTCAACGTTCGCTCAGTTAATCAGTGAACAGCTT
CGGTCTTGTTTCGTCTTCTTCAAACAGCTTTGTTCACCATGCCAGAACAT
GGCAGGCAAGCTCAACGTTTGTCACTCACCACCTACAGGTGGCGAGTGAG
GTACTTGAACACAAGGAAGCAGTGCCTGCGGGGACGCTACCAGACAAAAA
CATTGTCGACTTCTTGCTCAACCAGCCATGGCCTTCGTTCCTGAGGGTAA
GAGTAACCGGTATGCAATAGACAACGTCCCGTGATGAGCTCGACCCCAGA
GCAGCTTCAGGAGGAACAAGCCACTGCCGTGATCTCTCATATATCTTTCA
TTCGTCAAATTCGACGCAACACCCACTGGCATCGTGTGCAAATAGCAGTC
CATCTTGTTTTTCGCTGCGTTACACTGCACCATTCGTTCAGGAAATTGGC
AACGATCTGGGCACTCACCAGGTTCCAGCTCCCCCTCCGACAGCGAGGAC
GACGAAGACGAAGACTTCGAAGACGGCGACGGCGGTGCCGGATCTGGCAA
ACGCAAAGGTATTGTATGTCGGGGGCTGTATTTTTTGGAAGATTGGCTGT
TGTTTTGTTTTTCCCCCAACGAGCACACGTTGGCCGCTGGGTTGTCCAGC
GGGATATATTCGGAGGACACGCGATTGATGTGTTACTGTAGTGCCTGCTT
TCCCAACGACGTCGCGTTGACCACCAGCCACGCATCATCGTTTTCTGCAG
CGCGGAAGGACCCACCATCTGCAAAGAAGTCGCCGAAGCTGGCGAAACCT
GTCACAGAGAGCCTAAAGGAGAAAGCCCGGTACGCAATTGTTTATGTTCT
CAACAACAAGGGATGGGCCGTAGACTAGAGCATGTAGCGTTCAGATGTAC
GAATGTGATGACGGGAAAATGAGTGTTCATTCCGCAGGAACACTTTTGGA
TGCACTCGTCTTGTCGTCGTCGGTTTCATTCAACCTGTCGATGTATCTGA
AATTCAAAATGCGATTTATGCCCGTGAACCTCAGGAGGCACATGACCAAA
GTTGTGGCGGTGGACGTCCTCGGTTCTTTCGACAAGAGCATCGATGTTTC
TCCTCCAGGCGGCAGAAAGTTCATGATGGCCTTCGTCAACATCGCGTCGA
AGCCTTCCATCGATGATCGCGACTCCACAGACGGGGATGGTCTGCGGGAT
GCCTTGGATTTCCTCGCGGAAGGGATGGATGTTAAGGGCACGCTTGTCCT
GGCTTTGCCCGAAATTAACTTCGATCTCCGGCACCTGCAAGGTACGCACG
CGTGATTCCCCCCGGGTGTCTTAGAGAGACCAAGTCGGAACACTACATAC
AAGTTTGTCTGTTGCAGTTGCCCATGACAAGCCGTGTGCTTTTAGGTTGC
TTGTTTTTCCTTGTATCGCCTCCTTGCCACATTGTTGTGGCTTAGTCGTC
GGGAGTTTTGCTCTGTGGCTGTTCCTTTCCTTGTGTGTCGCTGACTGTAT
AACCAGGTACCTTACATGTGTGTCGTTGAGTTGGGCCTGCCCGTCGGACT
TGCCCCTCTAGCTTTTGACTCAAGATGATCGCTTGCATGCCGTGATTTCG
CGTGATCTTCACATGTTCCGTTTTTTCGAAGATATGATGAAGAAGGCCGG
ACTTATCTTAGAGCAACAGCCAATCGTGTCGGCGTACCTTCTGTTGAGGA
ATAAGGATGTGATATGATAACGCAGAGTATCGACCGTGGGAAGGTTGGGA
CGGGATATTGTTTTGAATGTTCTAGAGTCTGAACGTTCCGCGGTTTGTTG
CTTATTGGATGCTCAGGAGCTGGAACGTCCCGCGGTATTTGGGAATTTCT
AGAGCAAGAATTGTCCACGACATGGGAGGAGCACCGACCCCCTTTGTCTT
ACTCTCGTCTGCGCATCATACTATATGAACAAGTAAACTGCTGTGCCTGC
ACTACTGTGTCACAAGCCACAAGGATATCTACGTATCTCAACACCTTCAC
TGCCTAAGCGGGTGTACGAAGAAGAACACGGAGAACCTGTACACTCCTCA
AGTTTCCGTCGTGGCGATAGCACACCAGACCGCATACTTCGTGTGCAATG
GTGGCCGGGCGAGATCAACATCCTCAGCACCTGCGTCGAGAAGCACTGCG
GTCCAAATGCCGCGCACCCCCGAGATGGACGCCATAGGACTTGTCGTGTC
GAACAGCCACCCTTCCAAGGAGACTTTTCTGGCGCAAAGCATGATGTAGA
TCCTCATCCGACCGTACAAAGTCTGTCTGTACCGCTGTACTTCGAAATTG
ATGTCTTCCAACTCGTCGTTCGAGCATTTGTCTGGGTGTGTTTTTTTCGC
TCGTCAGGGGTTAGGGTTAAGGTTAGAGTTTTAATGTCCTAGAGTGCTTG
AATATTCGCTGTCAGGTTCTCGGACGTGGGCGATGTAGTGCTGGCTACTG
CTGCCGACAGAGACCCACTACTTTCGCGGATGGTGCTTCGAGAGGGACGG
TCGCTCGTCGCCTTGGTGCCTGATCTTGCCAGGTTGTTGGAGGTGAATGA
GAAGCTGGCAGCTGTTTGCGACGAGTCCTCGAAATCAAGGCTGTGGAAAC
GGATGCTAGAGTCACCCAAGACCCAGTTAGTGGTTGGGAAGGACACCAGG
CTCGTCAACGTGCCCGACACGAACGTCCCAAGCCGCCAGGACCGTCGGGC
CGGATGGTCTCACCCCTGACCGGCAGGTGGCCGACATCTCGGCTGAAGAG
AACGGTTTCAAGATCAAGGTACACGAAGTGGGAAAGGGATGCGTGAAGCG
GGCAAGGGAGAGACTCTTTTACGCGTTTTTCAAAGAGAATCGCCACCAAC
ATATACTTTTTCTACCCGCCTGACGTAGTGCCGTTTCGCTTTTTTTCTTT
TCGCCCTGTTGCGATCTTTGGCTGTCCCATGCTGGTTGCCTCCCAGGGTT
CTACGGTTCATGGACTCGGTCTGCTTGCTGCCAAGGATATCAAGAAAGGA
GACCAAGTGGAGATGTCATGCTTGGGGAAGTCCGTAGTGTATGACACAGA
GGCTGACCTTAAGAATGTTATGAAAAATGATAGCGTGCCTCGGTACTTGG
TGACACAACAAATTGCTAACAGGAGATGAGCTGGCGCGGCCGGACACTGC
GCTGTCTTTGGTCCCGCTGCCGTGTTCGATTTTGTTGTATATGAACTCGT
GCAGAGAGGATGTTGGGAAGGCGAACGTCCACCGGACTTGCGCCTTCAGG
CCTGAGGGCGGCAGCGCGGACACTGACGTACTTCGAACTCCACAGCGGTC
ATTGCGCTTCACCATTATGAAAGACGTAGAGGCAGGAGATGAGCTTTTGC
ACAACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig4419:4973..9080+

>mRNA_H-paniculata_contig4419.11176.1 ID=mRNA_H-paniculata_contig4419.11176.1|Name=mRNA_H-paniculata_contig4419.11176.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig4419:4973..9080+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACAAGTCTTGGCGATGTCGCCTCATGCTTTCGACGCCCTCTCAGA
CATCACGCACCTCCCCGACCGCGAGGACAACGACAAAGACTTGAAGTCAC
ACCCGGATGGACTGCACTTCGGCCGCGTCACCTCCAAAAGCCTGCTGCGC
GGAGAGTTCAAGAGCATGGACCCACACGAACAAGAAACTTACATCTACCG
CATCGCATCATGAGACAAGTCTTGGCGATGTCGCCTCATGCTTTCGACGC
CCTCTCAGACATCACGCACCTCCCCGACCGCGAGGACAACGACAAAGACT
TGAAGTCACACCCGGATGGACTGCACTTCGGCCGCGTCACCTCCAAAAGC
CTGCTGCGCGGAGAGTTCAAGAGCATGGACCCACACGAACAAGAAACTTA
CATCTACCGCATCGCATCCGGGAAGAAGACCCTGTTTACGGGCCCCGAGT
ACGAGGAGCTTGATCAAGCAGCAAAGGACGTCGGCCGCGTCGTTAGATCG
CTGGAGATGCTCGTGAACCGACAGGACTGGAGCAAACGATTTCGTCGCGG
GAAGAAGACCCTGTTTACGGGCCCCGAGTACGAGGAGCTTGATCAAGCAG
CAAAGGACGTCGGCCGCGTCGTTAGATCGCTGGAGATGCTCGTGAACCGA
CAGGACTGGAGCAAACGATTTCGTCGCTTTGTTCACCATGCCAGAACATG
GCAGGCAAGCTCAACGTTTGTCACTCACCACCTACAGGTGGCGAGTGAGG
TACTTGAACACAAGGAAGCAGTGCCTGCGGGGACGCTACCAGACAAAAAC
ATTGTCGACTTCTTGCTCAACCAGCCATGGCCTTCGTTCCTGAGGGTAAG
AGTAACCGGTATGCAATAGCTTTGTTCACCATGCCAGAACATGGCAGGCA
AGCTCAACGTTTGTCACTCACCACCTACAGGTGGCGAGTGAGGTACTTGA
ACACAAGGAAGCAGTGCCTGCGGGGACGCTACCAGACAAAAACATTGTCG
ACTTCTTGCTCAACCAGCCATGGCCTTCGTTCCTGAGGGTAAGAGTAACC
GGTATGCAATAG
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