mRNA_H-paniculata_contig4419.11175.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4419.11175.1
Unique NamemRNA_H-paniculata_contig4419.11175.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4419.11175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4419contigH-paniculata_contig4419:1909..2637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size407
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4419.11175.1prot_H-paniculata_contig4419.11175.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4419 1912..2637 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.657577-UTR-H-paniculata_contig4419:1908..19111622930332.657577-UTR-H-paniculata_contig4419:1908..1911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 1909..1911 -
1691481245.553568-UTR-H-paniculata_contig4419:1908..19111691481245.553568-UTR-H-paniculata_contig4419:1908..1911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4419 1909..1911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.6774764-CDS-H-paniculata_contig4419:1911..21961622930332.6774764-CDS-H-paniculata_contig4419:1911..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 1912..2196 -
1691481245.5637739-CDS-H-paniculata_contig4419:1911..21961691481245.5637739-CDS-H-paniculata_contig4419:1911..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 1912..2196 -
1622930332.6945965-CDS-H-paniculata_contig4419:2520..26371622930332.6945965-CDS-H-paniculata_contig4419:2520..2637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 2521..2637 -
1691481245.5728302-CDS-H-paniculata_contig4419:2520..26371691481245.5728302-CDS-H-paniculata_contig4419:2520..2637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 2521..2637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4419.11175.1

>prot_H-paniculata_contig4419.11175.1 ID=prot_H-paniculata_contig4419.11175.1|Name=mRNA_H-paniculata_contig4419.11175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
LAVNPPSPDNINPPIDLRNSTSSSLLCELVGPNNREADQVARALQNVLKE
VVTVPPARDLKRRFAQKRPYNSQRETRQHDPPPPPKTSETLARLPRVAAL
IKQATREVRLAARINVAVGSPWQKWNSSGNQSR*
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mRNA from alignment at H-paniculata_contig4419:1909..2637-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4419.11175.1 ID=mRNA_H-paniculata_contig4419.11175.1|Name=mRNA_H-paniculata_contig4419.11175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at H-paniculata_contig4419:1909..2637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCCGTCAACCCGCCATCCCCTGACAACATCAATCCGCCCATCGATCT
ACGGAACTCTACCTCATCATCACTCCTCTGCGAGTTGGTGGGCCCGAACA
ACAGAGAAGCTGATCAGGTGAGTTTCCGCAGTGCAACCCCCGCGATGCAC
TTCACCGAATTTGTGTGCTCTGTCCACTGCTGTGAGTCAAGCTATTCAGC
GGCTGAACTGCTGTAGACACGTACCCCACTCCTACTTTCTTCATGTACCT
GTTGTAGTCACCATGAACTGTTGTGGTGAGGTCTCAAGAGGAGAAACGGG
GGGTTCAAAAAGCAGTGACTCGAGTGTTGTATGTATAGAGGTCTTGGAAC
AGAACGTCAGCAGGCGGTTCAATGAAATGATGGTTGTAGATTGTAGCTTA
TCGTGTTGGCTTCTTCTTCTTTTGAATCTGCCCCACTCCAGGTCGCACGT
GCATTGCAGAACGTCCTGAAGGAAGTCGTCACCGTTCCGCCTGCGAGGGA
CTTGAAGCGGAGGTTCGCTCAGAAGCGCCCTTACAATAGCCAAAGAGAAA
CAAGGCAGCATGACCCTCCACCTCCCCCCAAAACTTCCGAGACTTTGGCG
CGATTGCCGAGGGTAGCTGCTTTAATAAAGCAAGCGACCAGGGAGGTGCG
CCTTGCTGCCAGGATAAATGTAGCGGTAGGTTCACCCTGGCAGAAATGGA
ACAGCAGCGGAAATCAGTCCCGGTGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig4419:1909..2637-

>mRNA_H-paniculata_contig4419.11175.1 ID=mRNA_H-paniculata_contig4419.11175.1|Name=mRNA_H-paniculata_contig4419.11175.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig4419:1909..2637- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCCGTCAACCCGCCATCCCCTGACAACATCAATCCGCCCATCGATCT
ACGGAACTCTACCTCATCATCACTCCTCTGCGAGTTGGTGGGCCCGAACA
ACAGAGAAGCTGATCAGCTCGCCGTCAACCCGCCATCCCCTGACAACATC
AATCCGCCCATCGATCTACGGAACTCTACCTCATCATCACTCCTCTGCGA
GTTGGTGGGCCCGAACAACAGAGAAGCTGATCAGGTCGCACGTGCATTGC
AGAACGTCCTGAAGGAAGTCGTCACCGTTCCGCCTGCGAGGGACTTGAAG
CGGAGGTTCGCTCAGAAGCGCCCTTACAATAGCCAAAGAGAAACAAGGCA
GCATGACCCTCCACCTCCCCCCAAAACTTCCGAGACTTTGGCGCGATTGC
CGAGGGTAGCTGCTTTAATAAAGCAAGCGACCAGGGAGGTGCGCCTTGCT
GCCAGGATAAATGTAGCGGTAGGTTCACCCTGGCAGAAATGGAACAGCAG
CGGAAATCAGTCCCGGTGAGTCGCACGTGCATTGCAGAACGTCCTGAAGG
AAGTCGTCACCGTTCCGCCTGCGAGGGACTTGAAGCGGAGGTTCGCTCAG
AAGCGCCCTTACAATAGCCAAAGAGAAACAAGGCAGCATGACCCTCCACC
TCCCCCCAAAACTTCCGAGACTTTGGCGCGATTGCCGAGGGTAGCTGCTT
TAATAAAGCAAGCGACCAGGGAGGTGCGCCTTGCTGCCAGGATAAATGTA
GCGGTAGGTTCACCCTGGCAGAAATGGAACAGCAGCGGAAATCAGTCCCG
GTGA
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