mRNA_H-paniculata_contig4419.11174.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4419.11174.1
Unique NamemRNA_H-paniculata_contig4419.11174.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4419.11174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4419contigH-paniculata_contig4419:47..1000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size472
Cds size471
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4419.11174.1prot_H-paniculata_contig4419.11174.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4419 47..1000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.5775402-CDS-H-paniculata_contig4419:46..2561622930332.5775402-CDS-H-paniculata_contig4419:46..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 47..256 -
1691481245.5159798-CDS-H-paniculata_contig4419:46..2561691481245.5159798-CDS-H-paniculata_contig4419:46..256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 47..256 -
1622930332.5904617-CDS-H-paniculata_contig4419:627..7561622930332.5904617-CDS-H-paniculata_contig4419:627..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 628..756 -
1691481245.5337021-CDS-H-paniculata_contig4419:627..7561691481245.5337021-CDS-H-paniculata_contig4419:627..756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 628..756 -
1622930332.6078627-CDS-H-paniculata_contig4419:868..10001622930332.6078627-CDS-H-paniculata_contig4419:868..1000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 869..1000 -
1691481245.5436854-CDS-H-paniculata_contig4419:868..10001691481245.5436854-CDS-H-paniculata_contig4419:868..1000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4419 869..1000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4419.11174.1

>prot_H-paniculata_contig4419.11174.1 ID=prot_H-paniculata_contig4419.11174.1|Name=mRNA_H-paniculata_contig4419.11174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MRFTKCDTCALASEALDKGRLNGGPGWRAEEMGTIRRAQEDHHEDVRRSR
RVYIDGKQIAVSTPGKLLCIAIDGSDQSSYALFYFPQGPTLPCRYYTGRW
SICSRGGKRPVLHFLASFICSVITAAERTRNSILVKWEPKFEMGTLGYIG
NRLYPED
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mRNA from alignment at H-paniculata_contig4419:47..1000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4419.11174.1 ID=mRNA_H-paniculata_contig4419.11174.1|Name=mRNA_H-paniculata_contig4419.11174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=954bp|location=Sequence derived from alignment at H-paniculata_contig4419:47..1000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATTCACGAAGTGCGACACGTGCGCTCTTGCCTCCGAAGCTTTGGA
CAAGGGGCGACTCAATGGCGGGCCAGGGTGGAGAGCGGAGGAAATGGGCA
CCATCCGGCGCGCTCAGGAAGATCACCACGAGGTAGGTGTGATTTAGAAC
CCCTCGATTAACATCCGGACCTTCCATGCTCTCACTCATTAGGTGTGTTC
TCAATACAGCACTCACTTCACGATATATTGCTCTCTTTTGTCAGGACGTG
CGACGTAGCAGAAGAGTCTACATAGATGGGAAGCAAATAGCGGTATCGAC
ACCGGGAAAGCTGCTCTGCATCGCTATCGACGGCTCGGACCAGTCCTCCT
ACGCGCTATTCTACTTTCCACAGGTAGGTGTGCTTCGGGGGGGGTCGCAT
GGTGCGTCTAACGCGTTGGAATACGGAGGAAGAGTTCAGCTCGTGGTGTG
TATTGCACCAAGGGGTGTTCGCCGGCTTTCTGTTTTGCATTGCACAGGAA
ACGAAAGACTCGTGCAAGGGATGGAAGTTCAGGACGAAGCTCATCGCGGC
GTTGATGACTGGAAGGGTGTACCATTTCTTCACAGTTGCGAATAACTTCG
AGACTGGTAAGGGAGCAGTAGACAGAGCATATGGTGTTTCCGTGGTTCCA
GGACAAATCCAGTGCTTGGTGATCCACTACCTTCATTGTAAAAATACCCT
ATAACCGGAGTTAATCTCTTTGTCCTGTGTTGTGTTCCCCTCAGGGTCCA
ACCTTACCGTGCAGGTACTACACGGGACGCTGGTCAATCTGCTCAAGAGG
AGGCAAGCGTCCGGTACTCCACTTCCTCGCGAGCTTCATCTGCAGTGTGA
TAACTGCAGCCGAGAGAACAAGAAACAGCATATTGGTGAAATGGGAACCC
AAGTTTGAGATGGGGACCCTGGGTTATATTGGAAATAGGCTGTATCCTGA
AGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4419:47..1000-

>mRNA_H-paniculata_contig4419.11174.1 ID=mRNA_H-paniculata_contig4419.11174.1|Name=mRNA_H-paniculata_contig4419.11174.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig4419:47..1000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATTCACGAAGTGCGACACGTGCGCTCTTGCCTCCGAAGCTTTGGA
CAAGGGGCGACTCAATGGCGGGCCAGGGTGGAGAGCGGAGGAAATGGGCA
CCATCCGGCGCGCTCAGGAAGATCACCACGAGATGAGATTCACGAAGTGC
GACACGTGCGCTCTTGCCTCCGAAGCTTTGGACAAGGGGCGACTCAATGG
CGGGCCAGGGTGGAGAGCGGAGGAAATGGGCACCATCCGGCGCGCTCAGG
AAGATCACCACGAGGACGTGCGACGTAGCAGAAGAGTCTACATAGATGGG
AAGCAAATAGCGGTATCGACACCGGGAAAGCTGCTCTGCATCGCTATCGA
CGGCTCGGACCAGTCCTCCTACGCGCTATTCTACTTTCCACAGGACGTGC
GACGTAGCAGAAGAGTCTACATAGATGGGAAGCAAATAGCGGTATCGACA
CCGGGAAAGCTGCTCTGCATCGCTATCGACGGCTCGGACCAGTCCTCCTA
CGCGCTATTCTACTTTCCACAGGGTCCAACCTTACCGTGCAGGTACTACA
CGGGACGCTGGTCAATCTGCTCAAGAGGAGGCAAGCGTCCGGTACTCCAC
TTCCTCGCGAGCTTCATCTGCAGTGTGATAACTGCAGCCGAGAGAACAAG
AAACAGCATATTGGTGAAATGGGAACCCAAGTTTGAGATGGGGACCCTGG
GTTATATTGGAAATAGGCTGTATCCTGAAGATGGTCCAACCTTACCGTGC
AGGTACTACACGGGACGCTGGTCAATCTGCTCAAGAGGAGGCAAGCGTCC
GGTACTCCACTTCCTCGCGAGCTTCATCTGCAGTGTGATAACTGCAGCCG
AGAGAACAAGAAACAGCATATTGGTGAAATGGGAACCCAAGTTTGAGATG
GGGACCCTGGGTTATATTGGAAATAGGCTGTATCCTGAAGAT
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