mRNA_H-paniculata_contig44180.11173.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44180.11173.1
Unique NamemRNA_H-paniculata_contig44180.11173.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31)

HSP 1 Score: 73.2 bits (178), Expect = 4.310e-13
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   19 PKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITY 234
            P+  +E EEM+  PY+ AVGAL++++T TRPD ++AV    KF +NPG++H +AV +I++Y+  T    I Y
Sbjct:   23 PQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILY 94          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: UPI001EF8BF8C (secreted RxLR effector protein 161-like n=1 Tax=Diprion similis TaxID=362088 RepID=UPI001EF8BF8C)

HSP 1 Score: 70.1 bits (170), Expect = 2.740e-12
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   22 KPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITYRTAGSK 252
            KP  E+E +   PYR AVG+L+++A ++RPD + AV   +KF  N    H RAV +I  Y+L TA+  I YR+ GS+
Sbjct:   18 KPITESESVDSVPYREAVGSLMFLAIVSRPDISFAVNNASKFLNNHDSNHWRAVKRIFAYLLGTANFGIVYRSGGSE 94          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: E2LZP6_MONPE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2LZP6_MONPE)

HSP 1 Score: 72.0 bits (175), Expect = 3.300e-12
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1
Query:    1 MIKNDRPKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITY 234
            + K+  P+  +E EEM   PY  AVG+L+++ATMTRPD  +      +F  NPG++H +AV  +L+Y+  T D+++ Y
Sbjct:  366 LSKSQSPQTPDEVEEMSEIPYISAVGSLLYLATMTRPDIAYTASVLARFNSNPGMDHWKAVKHVLRYLKGTMDIKLEY 443          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: UPI001E1BC78C (secreted RxLR effector protein 161-like n=2 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BC78C)

HSP 1 Score: 70.1 bits (170), Expect = 5.930e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 MIKNDRPKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEI 228
            ++ + RPK   E      +PYR AVGAL++VA MTRPD  +AV   +K+C+NP   H  AVV+I  Y+  TAD  I
Sbjct:   17 LVTSKRPKSEGEMTTASPYPYREAVGALLYVALMTRPDICYAVGQVSKYCQNPDPSHWDAVVQIFAYLKGTADYGI 92          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 70.9 bits (172), Expect = 9.020e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   25 PSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITYRTAGSK 252
            P E+ E +   PYR AVG+L++VA ++RPD   AV T +KF  N    H +AV +I  Y++ TADL I YR++GS+
Sbjct: 1380 PVEKNEYVSNVPYREAVGSLMFVAIVSRPDIAFAVNTASKFLNNHDQSHWQAVKRIFAYLVGTADLGIEYRSSGSE 1455          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A0J7KFA6_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFA6_LASNI)

HSP 1 Score: 67.8 bits (164), Expect = 5.270e-11
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query:   22 KPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITYRTAGSKCWL 261
            KP+E+ E+    P+R AVG+L+++A MTRPD  +AV   +K+  N    H +AV +I +Y+  T    ITYR  GS+  L
Sbjct:   35 KPAEDTEKRLAVPFREAVGSLMFLAVMTRPDLAYAVNNVSKYLANLDESHWQAVKRIFKYLKGTTRFGITYRAGGSESQL 114          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A4S4MMC6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MMC6_9APHY)

HSP 1 Score: 68.2 bits (165), Expect = 7.200e-11
Identity = 28/76 (36.84%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 MIKNDRPKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEI 228
            + K+D P  +++  EM+ +PYR  VGA++W++ + RPD   A     +F  NPG+ H +AV ++L+Y+  T DL +
Sbjct:  258 LTKDDCPTSAKDIAEMKAYPYREIVGAILWISLIARPDLAFAAGHLAQFNANPGMTHWKAVKRVLRYLAATRDLRL 333          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A4S4MXI6_9APHY (Uncharacterized protein (Fragment) n=2 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4MXI6_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 9.100e-11
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   19 PKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITY 234
            P    E   M+  PY  AVGAL+++AT TRPD  + V T  +F  NPG+ H  AV  +++Y+  T D+++TY
Sbjct:   36 PTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTY 107          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A4S4LS10_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4LS10_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-10
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   19 PKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITY 234
            P    E   M+  PY  AVGAL+++AT TRPD  + V T  +F  NPG+ H  AV  +++Y+  T D+++TY
Sbjct:  116 PTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTY 187          
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY)

HSP 1 Score: 67.0 bits (162), Expect = 1.970e-10
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   19 PKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFCKNPGVEHKRAVVKILQYVLRTADLEITY 234
            P    E   M+  PY  AVGAL+++AT TRPD  + V T  +F  NPG+ H  AV  +++Y+  T D+++TY
Sbjct:  952 PTTDAERASMKDIPYINAVGALMYLATATRPDIANTVSTLARFSSNPGMAHWNAVKHLMRYLQGTLDMKLTY 1023          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44180.11173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1BCD314.310e-1344.44secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
UPI001EF8BF8C2.740e-1244.16secreted RxLR effector protein 161-like n=1 Tax=Di... [more]
E2LZP6_MONPE3.300e-1239.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BC78C5.930e-1246.05secreted RxLR effector protein 161-like n=2 Tax=Da... [more]
A0A0J7KRG1_LASNI9.020e-1246.05Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A0J7KFA6_LASNI5.270e-1141.25Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A4S4MMC6_9APHY7.200e-1136.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4MXI6_9APHY9.100e-1141.67Uncharacterized protein (Fragment) n=2 Tax=Antrodi... [more]
A0A4S4LS10_9APHY1.490e-1041.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4M1D7_9APHY1.970e-1041.67Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44180contigH-paniculata_contig44180:1230..1601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue9.8e-11
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size372
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.5270073-CDS-H-paniculata_contig44180:1229..16011622930332.5270073-CDS-H-paniculata_contig44180:1229..1601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44180 1230..1601 -
1691481245.4996634-CDS-H-paniculata_contig44180:1229..16011691481245.4996634-CDS-H-paniculata_contig44180:1229..1601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44180 1230..1601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44180.11173.1prot_H-paniculata_contig44180.11173.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44180 1230..1601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44180.11173.1

>prot_H-paniculata_contig44180.11173.1 ID=prot_H-paniculata_contig44180.11173.1|Name=mRNA_H-paniculata_contig44180.11173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MIKNDRPKPSEEAEEMRGFPYRGAVGALVWVATMTRPDTTHAVRTRTKFC
KNPGVEHKRAVVKILQYVLRTADLEITYRTAGSKCWLTLTRIMQRARTAD
ARSPAERYCWEGGRSVGTRELKR*
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mRNA from alignment at H-paniculata_contig44180:1230..1601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44180.11173.1 ID=mRNA_H-paniculata_contig44180.11173.1|Name=mRNA_H-paniculata_contig44180.11173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at H-paniculata_contig44180:1230..1601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAAAACGACCGGCCGAAACCCTCAGAGGAAGCCGAGGAGATGAG AGGGTTCCCATACAGGGGGGCAGTGGGGGCGCTCGTGTGGGTGGCGACAA TGACGCGACCCGACACCACACACGCCGTGCGCACTAGGACGAAGTTTTGT AAGAACCCAGGGGTGGAGCACAAAAGAGCTGTGGTGAAAATTCTGCAGTA CGTACTAAGGACCGCAGACCTGGAAATCACCTACAGGACTGCGGGGTCGA AATGTTGGCTTACGCTGACTCGGATTATGCAACGTGCCAGGACAGCCGAC GCTCGGTCTCCGGCGGAGCGGTACTGCTGGGAGGGGGGGCGATCAGTTGG CACGCGAGAACTTAAGAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig44180:1230..1601-

>mRNA_H-paniculata_contig44180.11173.1 ID=mRNA_H-paniculata_contig44180.11173.1|Name=mRNA_H-paniculata_contig44180.11173.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig44180:1230..1601- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAAAACGACCGGCCGAAACCCTCAGAGGAAGCCGAGGAGATGAG
AGGGTTCCCATACAGGGGGGCAGTGGGGGCGCTCGTGTGGGTGGCGACAA
TGACGCGACCCGACACCACACACGCCGTGCGCACTAGGACGAAGTTTTGT
AAGAACCCAGGGGTGGAGCACAAAAGAGCTGTGGTGAAAATTCTGCAGTA
CGTACTAAGGACCGCAGACCTGGAAATCACCTACAGGACTGCGGGGTCGA
AATGTTGGCTTACGCTGACTCGGATTATGCAACGTGCCAGGACAGCCGAC
GCTCGGTCTCCGGCGGAGCGGTACTGCTGGGAGGGGGGGCGATCAGTTGG
CACGCGAGAACTTAAGAGGTGAATGATCAAAAACGACCGGCCGAAACCCT
CAGAGGAAGCCGAGGAGATGAGAGGGTTCCCATACAGGGGGGCAGTGGGG
GCGCTCGTGTGGGTGGCGACAATGACGCGACCCGACACCACACACGCCGT
GCGCACTAGGACGAAGTTTTGTAAGAACCCAGGGGTGGAGCACAAAAGAG
CTGTGGTGAAAATTCTGCAGTACGTACTAAGGACCGCAGACCTGGAAATC
ACCTACAGGACTGCGGGGTCGAAATGTTGGCTTACGCTGACTCGGATTAT
GCAACGTGCCAGGACAGCCGACGCTCGGTCTCCGGCGGAGCGGTACTGCT
GGGAGGGGGGGCGATCAGTTGGCACGCGAGAACTTAAGAGGTGA
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