mRNA_H-paniculata_contig4418.11172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4418.11172.1
Unique NamemRNA_H-paniculata_contig4418.11172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4418.11172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4418contigH-paniculata_contig4418:1090..5416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size1040
Cds size831
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4418.11172.1prot_H-paniculata_contig4418.11172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4418 1090..5209 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.4067593-CDS-H-paniculata_contig4418:1089..11821622930332.4067593-CDS-H-paniculata_contig4418:1089..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 1090..1182 -
1691481245.4399493-CDS-H-paniculata_contig4418:1089..11821691481245.4399493-CDS-H-paniculata_contig4418:1089..1182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 1090..1182 -
1622930332.4240735-CDS-H-paniculata_contig4418:1527..19381622930332.4240735-CDS-H-paniculata_contig4418:1527..1938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 1528..1938 -
1691481245.4567297-CDS-H-paniculata_contig4418:1527..19381691481245.4567297-CDS-H-paniculata_contig4418:1527..1938Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 1528..1938 -
1622930332.4400816-CDS-H-paniculata_contig4418:4353..46201622930332.4400816-CDS-H-paniculata_contig4418:4353..4620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 4354..4620 -
1691481245.4688041-CDS-H-paniculata_contig4418:4353..46201691481245.4688041-CDS-H-paniculata_contig4418:4353..4620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 4354..4620 -
1622930332.4612513-CDS-H-paniculata_contig4418:5149..52091622930332.4612513-CDS-H-paniculata_contig4418:5149..5209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 5150..5209 -
1691481245.4791615-CDS-H-paniculata_contig4418:5149..52091691481245.4791615-CDS-H-paniculata_contig4418:5149..5209Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4418 5150..5209 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.4762664-UTR-H-paniculata_contig4418:5209..54161622930332.4762664-UTR-H-paniculata_contig4418:5209..5416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4418 5210..5416 -
1691481245.4889455-UTR-H-paniculata_contig4418:5209..54161691481245.4889455-UTR-H-paniculata_contig4418:5209..5416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4418 5210..5416 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4418.11172.1

>prot_H-paniculata_contig4418.11172.1 ID=prot_H-paniculata_contig4418.11172.1|Name=mRNA_H-paniculata_contig4418.11172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=277bp
MAFIRAVWSSARRASNLPSQAACVERSHSGQGVQSSLLFLLSRDSSTKST
GADRSAASPILCGTCQGPLESRKDSQGVSSVRCAKCCSEWQPWTASSTLS
SSNSSNPPQPPQRSASSAMGPGMRHPDISQVLSTAGSSNSNSNSNSNFTS
PPSSKKPHQRQHQLHAAHPPSSLERDLHEGNPSRFRLSGKAPDAASAAGG
GKLSVPPPGVSNATRRSRDRQHDAQSWSREVQEGYDAGSSGGAAGEGTTS
RHYPGAFSKDGGGGVGGEDEGGPPDED
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mRNA from alignment at H-paniculata_contig4418:1090..5416-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4418.11172.1 ID=mRNA_H-paniculata_contig4418.11172.1|Name=mRNA_H-paniculata_contig4418.11172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4327bp|location=Sequence derived from alignment at H-paniculata_contig4418:1090..5416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGACACACATCGTATGTCACACGCCACCTGATCGAATAGGTACCGTACA
CGTGTAGAACCCATCATCTTGACCGGGTGTCATAAGGATTGACGAAGAAT
CTAGTGGACTGTGGCCGCACGGCCGCGGCTTATTTCAGAACACCCTGCCG
TACGGACTGCGGCCCGAACCCATATTTGCTTGATCTTACTTTGAGTTGCA
CTGAACGATGGCCTTCATAAGGGCCGTGTGGTCTTCGGCACGAAGGGCGT
CGAATCTTCCCTCACAGGTGCGATGCAGGCTAGGTTACCGTGAGATAGCA
TGGTGTTTATGCACATGCTCTTCTCTTGGCCATAGGGAATGCTTCAACCT
TCTCGATAGAAGGTTGTGTGGGACACGGTTTAGTTTTCCGTTTTGTACAG
CTCCAAAGTTCTTCAATAAATTACGCACTTGGTTAAATTTGCCGCAGCTT
TTCAACATGCAGAATTAAGCAATTGACAGCAGCACAAAGTTCAGGATACA
GATAGTAAATTTCCTCGTCGCTCATCACACCAATCCGCACTCAGCAACAG
ACAGTCAGTAACACGGCCTTACCATCGTTTTCTTTCTGGCTGTTGAACCA
CTCCCAACCCACCCAACCACTCACTGAACCCCCTCCTTCGATCCGTAATG
TCTGCTCTCTATTTAGAATCTCCGCAATGACGTTGCATTCGATCGAAACA
CAAGATGCCTCTCTTTCACTAGTTATGTACTCCCTCACTAAGCTTGGTAT
ACATTTTGTCTGTTGCTCATGACTCCTTGAAAATCGCGCAAAGCAGGCAG
CATGTGTTGAACGCTCACATAGCGGGCAAGGAGTTCAATCCAGCCTTCTG
TTTCTTCTCAGTCGCGACAGCTCTACAAAATCCACCGGCGCGGATAGATC
CGCCGCCTCGCCGATTCTGTGCGGCACGTGCCAGGGGCCGCTGGAGAGCC
GCAAAGATTCGCAGGGGGTCTCGAGCGTCCGTTGCGCCAAGTGCTGTTCG
GAGTGGCAGCCATGGACGGCCTCCTCCACATTGTCGAGTAGTAACAGCAG
TAATCCCCCGCAGGTGAAATACAAACAAGGTTTTGCTTGTGCCACCAGTA
CAAAATATGTGCACAGTCAAATGCATGCATAGATATGATTGCGTTGCATT
GACTTGCGCAACAGAGCGTTTGGGTTTTCAGGCTGTTGGTTCTCGTGAGG
GATTTGAGGTTGGTTCATATCGGGTTCTAAACCAGGTAGATCGGAATAAA
AATGCCCTCCCCAGATGAATTGTTGCTGTCTCCAAAAGCATTTCAATATT
CCCAATGTATATTGGCTGTTTGGTCTAAGATGACGGTTGAGGGGCTATGT
TTACCTTTCATGCGCATTTTCCTGTTGGTGTAGAACTATCATCCTCACCG
GGTTGGGGGGGGTATATTCCCGAGCTTGACGGATTTGTTACTCTAGATCT
TATACCCAGCACTCAAAAGTGCAGTGTATCGATTATTAGTGCTCATGTTA
AGTCGCACTCCTCACCAAATGAAGGTCGAAAGAGGGTTGTTTTTGTCTTT
ATATGCAAAACAAATGACGCCTGTTACTTGAAGAGGAGTTCCGGCGGGAT
GTTCGAGACATGACCCGTCGCTAGGGCGATCAATAGCTGTTGCTCCTAAG
TAGTGGTCAGGGGCAGGATAAGACTTGCTGGAATGGAACATGGGATTTAC
TGCCTTGTCATGCATGAGGTTTATACCCGCAGTTCGCACGTATCAACATC
ATGTGTCATGTGTATGGTGGAGAGAAAACAATCAAGAGTAACAGATCGGC
GATAATATTTTACATATTTCAACTACGCCGGTATGACGGTCCGCGTAACG
TACAACGATCGAAGGCGGGCCATTTAGAGGAGGTTGCGTTCGTTCTCTAT
CGCACCCCTGTCCAAGGATGAAAGACGGCGGGTGCTTCGTGTGTTGCGCT
GCAGTTCCTTGTATCGTCACACCAAAGCTTTCCAATGAATGCGGTGTCTG
CTGTTTTAAGGTGGCATTCATCAACATGGGTTTGTCCCGAATGGTGACAG
GCGTCGAGACTCGAAAACCGTGCGTGGAGGTTCAATTTGCGGTACTTGCA
CAATACTTACTCCTAGTATATATCGTGTTGTACTCACAAGGTGCTACGTC
AATGTGTTGCTTGGTTATGTACTGTTGCACGCTAACGTACAACTCGTGCA
AGTCCTCGCGGCTCCAGTGCAATTGAACTGACCCCGTCAATTTTGTTTTT
AGAATACTTTCGTTTGCAGGAGACTCAAATGATTTATCTCGTCGACCCCA
GCTGTTGCCCATACAGATCACCGGTCCCATTCTATTACTGGCGACGTTAT
TGTGGAAAAAAATGAAATTCCCTCTCGGAAGGTATTGCAGCGCAATGCTA
AGTCCTTCATTGAGACCTTTTGCTTTCATGCCACAGAAACGTTGTTCTTC
TCATCCGTCCGTTGCTAATTTCCGCCGCACATGTTTTAATAGATATATCG
CACTCAGATGCACATCTACTCGTATATTAGGTAATATAGATCAAAGAAGG
ATTTGACCATTAGTCTGCCTACGAGCATCAAGCGTAGGATACACTACATC
TGATGGTGGGGTTAACTGCGTGCGGTGACCTTGATCATTGCGTATACGAG
GTTCTAGGTCTAATACTAGGCGTACTCAGATAGGGGTGTGCACATGTTAC
CAACATATTGGAATGGACCGAATGTTTGCCACGGCTCATGTCCATGAAGT
TGTTGAACATGCTTTCTATTCATCGTGGGCCAACGCAAAACTAGCGTTTT
GCGTTGTTAGGGTTGCGTCCGAGAGCACCTGCTTTTCTTCGCATAACTAT
TTCGTTTCAGTCCCATGAATCACGTACTAGACATGTTTCGTCATTTACCA
GTACGCTCTTCGATGAGTACCCTCCCCACCCGCTGTTTTTGGCCCCCTCT
TGCACCCCATGCACGCCTAACGATGGTTGGCTAGATTTCCCTTCGTATTG
TTCACAATCTCATTTTGCTGATGAGCGTACACAACGGTGGATTGAAGCCA
GCTCCATAAACTCAACATTAATACAAGGGAGAGCTTGTCATTTGTGCGCT
AGAGATTGTTCGTGCTAACTGTGGCAAGTGGTTTGGCTCATAAATGAGAC
TCCCGGTGTTGAAAGGTGGGGGGGTTATTTTAGGAATTGGTACAATGTAT
CCATGTTAAAAACTAGTGCATGTTTCACGTTTTTGTATCACATGAGAGTG
ATTCAAAAATATTCTCTCCTGAAGATTGTCCTAGCCCATGTTGTGCCTGT
TGGAAGAGATGCGAGAAGTTCTGGTACTAGGTCGTCGTCGCGGTCAAAAC
GAATGTCATCTAAGTAGAACCCTCAAAATAGCATATACCCAAATATCCAA
GCTAATTCGAAAGTCAATTCACCTGGACTGACCCCCTCCGCCCGGCCTCT
ATCGGGTGCTTTGTGTGCACCCCTACAGCCCCCTCAAAGATCCGCTTCTT
CGGCAATGGGCCCAGGCATGCGGCACCCCGACATCAGCCAAGTGCTGTCG
ACGGCGGGATCTTCTAATTCCAATTCCAATTCCAATTCTAATTTTACATC
CCCTCCGTCATCCAAGAAGCCCCACCAGCGCCAGCACCAGCTGCATGCCG
CGCACCCTCCCAGCAGCCTCGAGCGAGACCTTCACGAAGGCAATCCCAGC
AGGTTCCGGCTTTCAGGAAAGGCCCCCGATGCTGCCTCGGCTGCCGGTGG
CGGAAAGTTATCCGTTCCCCCTCCAGGCGTGAGTAATGCCACCCGGCGAT
CGCGCGACAGGCAGCATGACGCCCAAAGTTGGAGCCGAGAGGTTCAGGAG
GGTTATGACGCGGGTTCCAGCGGAGGCGCTGCCGGGGAGGTAGGCGGTTC
TTCACCTTGCCGTTACGCTGCTGTATACTGTATTGATGATGCCCTTTTGG
ACTCCTGTCATATTTTGTAGTAACTGAGTTGGCTGTGTCGAATAACGTTG
TGTTTACGCCTGCCATTGTCTTGACACCATTCGGGATTTTACTTCTGCTT
TCACAGACGGGAAACCCTATCATCAATGTCACGTGTAGTGAACGGAAGCA
GTAATTTGGCGTATTCATCGCGAAACGTACAAATCGACCCACGCGGCTTG
AAGTAGTTTCTCCAGCTCATGATATCGACTTTCTTACCCGTTGGTTTATT
TTCAAAGCTCGGTCTTGTTCTGTCTCCTGATTAGGGGACGACGTCGAGGC
ACTACCCTGGGGCGTTTTCTAAAGATGGTGGAGGGGGCGTCGGCGGGGAG
GATGAGGGAGGTCCGCCCGATGAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig4418:1090..5416-

>mRNA_H-paniculata_contig4418.11172.1 ID=mRNA_H-paniculata_contig4418.11172.1|Name=mRNA_H-paniculata_contig4418.11172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at H-paniculata_contig4418:1090..5416- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCTTCATAAGGGCCGTGTGGTCTTCGGCACGAAGGGCGTCGAATCT
TCCCTCACAGATGGCCTTCATAAGGGCCGTGTGGTCTTCGGCACGAAGGG
CGTCGAATCTTCCCTCACAGGCAGCATGTGTTGAACGCTCACATAGCGGG
CAAGGAGTTCAATCCAGCCTTCTGTTTCTTCTCAGTCGCGACAGCTCTAC
AAAATCCACCGGCGCGGATAGATCCGCCGCCTCGCCGATTCTGTGCGGCA
CGTGCCAGGGGCCGCTGGAGAGCCGCAAAGATTCGCAGGGGGTCTCGAGC
GTCCGTTGCGCCAAGTGCTGTTCGGAGTGGCAGCCATGGACGGCCTCCTC
CACATTGTCGAGTAGTAACAGCAGTAATCCCCCGCAGGCAGCATGTGTTG
AACGCTCACATAGCGGGCAAGGAGTTCAATCCAGCCTTCTGTTTCTTCTC
AGTCGCGACAGCTCTACAAAATCCACCGGCGCGGATAGATCCGCCGCCTC
GCCGATTCTGTGCGGCACGTGCCAGGGGCCGCTGGAGAGCCGCAAAGATT
CGCAGGGGGTCTCGAGCGTCCGTTGCGCCAAGTGCTGTTCGGAGTGGCAG
CCATGGACGGCCTCCTCCACATTGTCGAGTAGTAACAGCAGTAATCCCCC
GCAGCCCCCTCAAAGATCCGCTTCTTCGGCAATGGGCCCAGGCATGCGGC
ACCCCGACATCAGCCAAGTGCTGTCGACGGCGGGATCTTCTAATTCCAAT
TCCAATTCCAATTCTAATTTTACATCCCCTCCGTCATCCAAGAAGCCCCA
CCAGCGCCAGCACCAGCTGCATGCCGCGCACCCTCCCAGCAGCCTCGAGC
GAGACCTTCACGAAGGCAATCCCAGCAGGTTCCGGCTTTCAGGAAAGGCC
CCCGATGCTGCCTCGGCTGCCGGTGGCGGAAAGTTATCCGTTCCCCCTCC
AGGCGTGAGTAATGCCACCCGGCGATCGCGCGACAGGCAGCATGACGCCC
AAAGTTGGAGCCGAGAGGTTCAGGAGGGTTATGACGCGGGTTCCAGCGGA
GGCGCTGCCGGGGAGCCCCCTCAAAGATCCGCTTCTTCGGCAATGGGCCC
AGGCATGCGGCACCCCGACATCAGCCAAGTGCTGTCGACGGCGGGATCTT
CTAATTCCAATTCCAATTCCAATTCTAATTTTACATCCCCTCCGTCATCC
AAGAAGCCCCACCAGCGCCAGCACCAGCTGCATGCCGCGCACCCTCCCAG
CAGCCTCGAGCGAGACCTTCACGAAGGCAATCCCAGCAGGTTCCGGCTTT
CAGGAAAGGCCCCCGATGCTGCCTCGGCTGCCGGTGGCGGAAAGTTATCC
GTTCCCCCTCCAGGCGTGAGTAATGCCACCCGGCGATCGCGCGACAGGCA
GCATGACGCCCAAAGTTGGAGCCGAGAGGTTCAGGAGGGTTATGACGCGG
GTTCCAGCGGAGGCGCTGCCGGGGAGGGGACGACGTCGAGGCACTACCCT
GGGGCGTTTTCTAAAGATGGTGGAGGGGGCGTCGGCGGGGAGGATGAGGG
AGGTCCGCCCGATGAGGATGGGACGACGTCGAGGCACTACCCTGGGGCGT
TTTCTAAAGATGGTGGAGGGGGCGTCGGCGGGGAGGATGAGGGAGGTCCG
CCCGATGAGGAT
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