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Homology
BLAST of mRNA_H-paniculata_contig11744.1117.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI) HSP 1 Score: 265 bits (677), Expect = 1.850e-75 Identity = 157/350 (44.86%), Postives = 195/350 (55.71%), Query Frame = 1
Query: 364 DSIVFVALGPAARSTSLLYALRSLKEEGEWRGPVHVIVGATEDLGCLMSHLPDADNINIVETSAETSTVAMG----KGGDGSSTIIAHAKMAKMHLLDLLPEALRRVVYIDVDVITQQPIAPFIGMVERRWAELDRA---------------------------DAAAAAKKKAANELRAYTHRLGEKTAATATKRRDGQISPPSTLLIFPDAWGHTVPVCPGCDLAHSGVVGIERGRSELCLKLWLEAFAGDDKSGREGTSTDQEALDYAIRKGSGCEATWLDASHLRFMKDISVLFGLSRTRTFGHFTSLLHPERLNWLFRRHYSKSLRRGFDEWGGKRGVIERCALE 1320
DSIVFVALGPAARS SLLYAL SL+EEG W G VHV+V +DL CL S+L ++ + + G GG + ++ +AKMAKM LLDLLP ++ RVVY+D DV+TQ+P+ PF+ V R W ELDR T++IF DA GHTVPVC GCD AHSGVV + RG SE CLKLW +AF GD +G GTSTDQEALD A+ +GSGCEA + HL FMKD V+ GL+RT TFGH+T LLHP+ L ++RR Y +L F+EWG +G I+ CA+E
Sbjct: 64 DSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYL--RQSVTAIAIAPXXXXXXXGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDG-AGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWG--QGEIQGCAVE 408
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 269.6 |
| Seed ortholog evalue | 2.4e-69 |
| Seed eggNOG ortholog | 2880.D8LSZ4 |
| Hectar predicted targeting category | signal anchor |
| EggNOG OGs | 2EYNU@1,2T04Z@2759 |
| Ec32 ortholog description | Nucleotide-diphospho-sugar transferases |
| Ec32 ortholog | Ec-26_001980.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 3374 |
| Cds size | 1269 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11744.1117.1 >prot_H-paniculata_contig11744.1117.1 ID=prot_H-paniculata_contig11744.1117.1|Name=mRNA_H-paniculata_contig11744.1117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=423bp
MRCRLFSLWRNVSLAALCLYVCGSIYIFSPPLRTSTTGARADNGAHKDSN
AQYSTFKQQPQNTVVPQPARPMAPETLQRVVDSIVFVALGPAARSTSLLY
ALRSLKEEGEWRGPVHVIVGATEDLGCLMSHLPDADNINIVETSAETSTV
AMGKGGDGSSTIIAHAKMAKMHLLDLLPEALRRVVYIDVDVITQQPIAPF
IGMVERRWAELDRADAAAAAKKKAANELRAYTHRLGEKTAATATKRRDGQ
ISPPSTLLIFPDAWGHTVPVCPGCDLAHSGVVGIERGRSELCLKLWLEAF
AGDDKSGREGTSTDQEALDYAIRKGSGCEATWLDASHLRFMKDISVLFGL
SRTRTFGHFTSLLHPERLNWLFRRHYSKSLRRGFDEWGGKRGVIERCALE
IEHRHAENAEANDRVSRRLRHH* back to topmRNA from alignment at H-paniculata_contig11744:3060..7189+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11744.1117.1 ID=mRNA_H-paniculata_contig11744.1117.1|Name=mRNA_H-paniculata_contig11744.1117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4130bp|location=Sequence derived from alignment at H-paniculata_contig11744:3060..7189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAAATATGAACTGATACTGCACACAGTTCTGCCAGAACCCCGTCCAAG
CCCAAGGCGGACGTGCGAGCAAGGCGGAGCAGGAAGAGCCGCACAACTAA
CAGAGAATTAAAACAATCAGATGCGATGTCGACTTTTCTCGCTCTGGAGA
AATGTGTCGCTCGCCGCGTTGTGCCTGTACGTTTGCGGAAGCATTTATAT
TTTCTCTCCTCCCTTGAGAACCTCGACAACAGGGGCGCGGGCAGATAACG
GCGCCCACAAGGACAGCAATGCTCAGTACAGCACCTTCAAGCAACAGCCG
CAAAACACCGTAGTTCCTCAGCCCGCCAGACCAATGGCACCGGAAACGCT
GCAAAGGGTCGTGGATTCTATCGTCTTCGTGGCGTTGGGTCCGGCAGCGC
GGTCGACGTCTCTGCTGTATGCCTTGCGATCGCTGAAAGAGGAGGGGGAG
TGGCGAGGGCCAGTGCATGTCATAGTCGGGGCGACGGAAGACTTGGGCTG
CTTGATGTCCCACCTACCCGACGCCGACAACATCAATATTGTCGAAACTT
CCGCCGAGACATCAACGGTAGCAATGGGAAAAGGGGGGGATGGCAGCTCC
ACCATAATAGCGCACGCAAAGATGGCCAAAATGCACTTGCTGGATCTTTT
GCCCGAGGCATTGCGCCGCGTCGTGTACATAGACGTCGACGTTATCACGC
AACAGCCCATAGCCCCATTCATCGGCATGGTAGAGCGTCGGTGGGCCGAG
CTAGATCGTGCAGACGCAGCGGCAGCCGCTAAGAAGAAAGCTGCAAATGA
GCTTAGGGCGTACACGCATCGCCTCGGCGAAAAAACTGCTGCAACAGCTA
CAAAAAGAAGGGATGGTCAAATCTCCCCGCCATCCACCCTGCTGATATTT
CCTGACGCATGGGGACACACTGTTCCGGTGTGTCCGGGGTGTGACTTGGC
ACACTCGGGCGTTGTGGGCATCGAGCGGGGACGATCGGAGCTTTGCCTGA
AGCTGTGGCTGGAGGCTTTCGCAGGCGACGACAAGTCTGGGAGAGAGGGC
ACCTCCACGGACCAGGAAGCTTTGGACTACGCCATCCGCAAAGGTGCGGA
GAAAAAGAGAAACGGTTGGTCTTGTACAAAATGTGGTGTGATGTAAACGG
CACGATGGTTGGTGGTTATGAACATGGACTTACCGTGTTTGTTTCTGTGT
CGCGCAGGAGGATATCCATCTACAGCCGGAGCTTACGGTTATGAAAGAAT
TATATGCTAGCAGAGAATACTGGTGCGACCTTAACAGACTTTCCGACGTA
TAGTACATCGCTAACCCCCCCACGCCCTCCTTCTGACTAGATCTTCTCAG
TAAGTCAATCTCTGTCAGCGTTGAACCCTACCGCTCCCCTTCGCCCCTTC
ATTTGTTTGAATCCTGTGGTGGCCTTGAGTTACAGGATTCATGGACCATT
TGCTCGTTAAAAAAATCGCTCTCCCTTGTATGATCTCCGTCGTCCCGAGG
ACGCGTGGTCGATGGTCGATCGACTACGGCATGCACAATATGAGTACACC
GAGTCCCTTATCCTACATTTGCTGATGAGTGTGCACGACTGAGATTTAAG
GTCAGCTGCATAATCCCAACATAGGTATGATCAAGTTGTTTTCTGAGTGT
TATAGATTTACTATTAATAACTGTGGCAAGTGGGTTGACCTGTGAAAGAG
GCGCACGGTGGGTGGAATGGAGTGTTTTATTTTTGTCTTGCGTTCACGTA
AAAACCATTTGATATTTACGCACAGTACACACGCGAGTGATACAGTGATA
CCCCTTGTGACCCCTTCCCCCATCCCCCTTCCCCCCGAAACATATTCAGG
TTCCGGCTGCGAGGCAACATGGCTTGACGCAAGCCACCTCCGGTTCATGA
AAGATATTTCCGTTCTCTTCGGTCTATCACGTACACGCACCTTTGGGCAC
TTCACGAGTCTTTTACACCCAGAGAGACTGAATTGGCTTTTTCGAAGACA
TTACTCGAAGAGTTTGCGGCGGGGATTCGACGAATGGGGCGGTAAGCGAG
GGGTCATCGAGCGCTGTGCTTTGGAAATTGAGCATCGGCACGCGGAGAAT
GCAGAAGCAAACGACCGCGTCAGCCGTCGCTTGCGGCACCACTAATGCTG
CCGGTAAATGTGCGTTTGGTGATAAAGGGGCGACGTGTGTGTCGGGGGGG
TGTTCATGTTTTGCGTGCCTTGAGGTATTATTGGACCGTTGACCGCCCGT
GCTCGGGAGAATGGAGTTGGGAGCGAGGGGGGGGGGTGAAGGGGCTGCAA
TCGAAGGTGCGCTCGAGTGTAAAGCGGAAAGCTTTGTGCCGCTGCAGAGC
TGCTAATATGTGGGTGTGCGTACCGAGACGTCAGAGATGAGAGAGAACAG
AACAGAGATAAGGGACTCAGAATAGTACTGGAGAACCAGACCGATGTTTT
TGGCCCACGAAACATGGGTCAACTTCCTTATTCTTCCTTTGTGTCGCTGC
TCTGGTTGTCATTGAGACCGTCGAAATCCTTGGGAATGTTATTTGTGCTC
GAATTTCAGTTTTCCGTCGTCTCCGCCTCCCTGCCCTTCTCCTTTTTACA
CCCGTGCTACCCCCCCCCCGCTCCTCTGCCCTGTGTGCTTGCTCGTTTTA
CTACTATAGCTGTCTACGAGGCCCTTGTCGTGTTCTTAGCGATGCCATAA
TTTCGATGTCGAGTACTTGAGGTGGTGGCTACGCCGCCGAAACACCTGAA
TAAAGTATTCAAATTATTCTGAAATTTGTAAGGGTTTGTGACGTTAGAAC
TAGCTCGTCTGAGGCATCGTATTCTTATGTAATGTTTGTGTTGCCGTAAA
TAAAGAGTTTGGTTGGGTTTTGTTTTCGAGGAAAACATGCCTCGGCCTTG
GGGCTCGAGCGCACAGTGTGCTCGCGAGAGAACGATAGTTTTGTCAGAAC
GCCAGGGCTGTTTTTTGCTGGGCGATGGACTCCACCAGAGGCGGTGCTCG
CCTCTCAGGTGCTGTGTTGGTCGTCATTGGATATCGGTGGAGAGTCTTCA
CGTTGTTCAGAACGCGGTAATCGTCTGTTATCTCGGGGGTGTACATTGTC
CATTCTCGCCCTTGTCTATTGCACGCGGTGTGGTTTGGTGTACAGTGATA
AGTAATGTTGAAAAGAGGAAGGCATTCAGCTCTTTTTTGAGTGAAGAAGC
CTGGTATAAGCACATGTGAATTGTTGAGTCGGTTATCAATCCGTAGGCGT
GTTGCTGTGTTGACCGATGAGTTGTATGACTGTCTGTTTTTATGTCTCCT
TGAAAGTGCTCCACGCCTTTTCTCTCTTGTTCTTTTTTTGGCTTTGTCGG
GCCTCTGTCGAATACTTTTTATGTTTTCCCAGTCTGTGGGTGTTTGAATT
CGTGTCGAGAGTACGGTAAGTCAGAGACACTGCCGTGGTGATGGGACTGG
CGTTTGCGCCCCTTGCCTACGGACCAATCATCTCACGCGTTGGTGACACG
GCGCCTCTGTTGCGCTGTCTAACCGTGCATGGAGAGGCTCACATCGGCGG
GTAGAAATCGTTGTCTTGAGATGTACGGGTACATGTGTTGCAGTCAAGAG
ATAGCGTCGTATTTGTATAAAGCAACTGGATCACTCAGCTAATGTTTTTG
AAGGTTTGGTTCTGCGATGTGTCTCTTGTATTTATTCTTATAAATAGGTG
GGGGGTTCAGGAAGGGGTGGTACACTGCCATAGTGATGCACTTGCTCATT
TTTTCGAAAGATACTGTTGATCGTCGACCTCCCTGCACTACTGTTGATAT
GGTTTCGTGTCACATTACAGTTTTCTTGTTTGTTTGTGTCAAGGCGATAT
GAATACGGCTTGTACCCTTTTTTCTTGCCCTTGTCAAGAGAAAACGTGTT
GTCTCCCCCCCCCGCTGCGCTCGTTTGATGTAACGTCCACCGTGTACCGA
TGGGTATGGCGACGTGTGTAGGTTACGCGATTACCCATAAGTTGTTCGTG
GTCAATTTGATAGTTTGTGCATCGTGGGAAAGATAAATACATTCTTTGTA
CTGTGAATTGGATACTCTACTGCGTTTGGCTTGTGACTAAACAACTAAAC
GGTATAAATAGCGATGTTCGTGATATTTAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig11744:3060..7189+ >mRNA_H-paniculata_contig11744.1117.1 ID=mRNA_H-paniculata_contig11744.1117.1|Name=mRNA_H-paniculata_contig11744.1117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2538bp|location=Sequence derived from alignment at H-paniculata_contig11744:3060..7189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATGTCGACTTTTCTCGCTCTGGAGAAATGTGTCGCTCGCCGCGTT
GTGCCTGTACGTTTGCGGAAGCATTTATATTTTCTCTCCTCCCTTGAGAA
CCTCGACAACAGGGGCGCGGGCAGATAACGGCGCCCACAAGGACAGCAAT
GCTCAGTACAGCACCTTCAAGCAACAGCCGCAAAACACCGTAGTTCCTCA
GCCCGCCAGACCAATGGCACCGGAAACGCTGCAAAGGGTCGTGGATTCTA
TCGTCTTCGTGGCGTTGGGTCCGGCAGCGCGGTCGACGTCTCTGCTGTAT
GCCTTGCGATCGCTGAAAGAGGAGGGGGAGTGGCGAGGGCCAGTGCATGT
CATAGTCGGGGCGACGGAAGACTTGGGCTGCTTGATGTCCCACCTACCCG
ACGCCGACAACATCAATATTGTCGAAACTTCCGCCGAGACATCAACGGTA
GCAATGGGAAAAGGGGGGGATGGCAGCTCCACCATAATAGCGCACGCAAA
GATGGCCAAAATGCACTTGCTGGATCTTTTGCCCGAGGCATTGCGCCGCG
TCGTGTACATAGACGTCGACGTTATCACGCAACAGCCCATAGCCCCATTC
ATCGGCATGGTAGAGCGTCGGTGGGCCGAGCTAGATCGTGCAGACGCAGC
GGCAGCCGCTAAGAAGAAAGCTGCAAATGAGCTTAGGGCGTACACGCATC
GCCTCGGCGAAAAAACTGCTGCAACAGCTACAAAAAGAAGGGATGGTCAA
ATCTCCCCGCCATCCACCCTGCTGATATTTCCTGACGCATGGGGACACAC
TGTTCCGGTGTGTCCGGGGTGTGACTTGGCACACTCGGGCGTTGTGGGCA
TCGAGCGGGGACGATCGGAGCTTTGCCTGAAGCTGTGGCTGGAGGCTTTC
GCAGGCGACGACAAGTCTGGGAGAGAGGGCACCTCCACGGACCAGGAAGC
TTTGGACTACGCCATCCGCAAAGATGCGATGTCGACTTTTCTCGCTCTGG
AGAAATGTGTCGCTCGCCGCGTTGTGCCTGTACGTTTGCGGAAGCATTTA
TATTTTCTCTCCTCCCTTGAGAACCTCGACAACAGGGGCGCGGGCAGATA
ACGGCGCCCACAAGGACAGCAATGCTCAGTACAGCACCTTCAAGCAACAG
CCGCAAAACACCGTAGTTCCTCAGCCCGCCAGACCAATGGCACCGGAAAC
GCTGCAAAGGGTCGTGGATTCTATCGTCTTCGTGGCGTTGGGTCCGGCAG
CGCGGTCGACGTCTCTGCTGTATGCCTTGCGATCGCTGAAAGAGGAGGGG
GAGTGGCGAGGGCCAGTGCATGTCATAGTCGGGGCGACGGAAGACTTGGG
CTGCTTGATGTCCCACCTACCCGACGCCGACAACATCAATATTGTCGAAA
CTTCCGCCGAGACATCAACGGTAGCAATGGGAAAAGGGGGGGATGGCAGC
TCCACCATAATAGCGCACGCAAAGATGGCCAAAATGCACTTGCTGGATCT
TTTGCCCGAGGCATTGCGCCGCGTCGTGTACATAGACGTCGACGTTATCA
CGCAACAGCCCATAGCCCCATTCATCGGCATGGTAGAGCGTCGGTGGGCC
GAGCTAGATCGTGCAGACGCAGCGGCAGCCGCTAAGAAGAAAGCTGCAAA
TGAGCTTAGGGCGTACACGCATCGCCTCGGCGAAAAAACTGCTGCAACAG
CTACAAAAAGAAGGGATGGTCAAATCTCCCCGCCATCCACCCTGCTGATA
TTTCCTGACGCATGGGGACACACTGTTCCGGTGTGTCCGGGGTGTGACTT
GGCACACTCGGGCGTTGTGGGCATCGAGCGGGGACGATCGGAGCTTTGCC
TGAAGCTGTGGCTGGAGGCTTTCGCAGGCGACGACAAGTCTGGGAGAGAG
GGCACCTCCACGGACCAGGAAGCTTTGGACTACGCCATCCGCAAAGGTTC
CGGCTGCGAGGCAACATGGCTTGACGCAAGCCACCTCCGGTTCATGAAAG
ATATTTCCGTTCTCTTCGGTCTATCACGTACACGCACCTTTGGGCACTTC
ACGAGTCTTTTACACCCAGAGAGACTGAATTGGCTTTTTCGAAGACATTA
CTCGAAGAGTTTGCGGCGGGGATTCGACGAATGGGGCGGTAAGCGAGGGG
TCATCGAGCGCTGTGCTTTGGAAATTGAGCATCGGCACGCGGAGAATGCA
GAAGCAAACGACCGCGTCAGCCGTCGCTTGCGGCACCACTAAGTTCCGGC
TGCGAGGCAACATGGCTTGACGCAAGCCACCTCCGGTTCATGAAAGATAT
TTCCGTTCTCTTCGGTCTATCACGTACACGCACCTTTGGGCACTTCACGA
GTCTTTTACACCCAGAGAGACTGAATTGGCTTTTTCGAAGACATTACTCG
AAGAGTTTGCGGCGGGGATTCGACGAATGGGGCGGTAAGCGAGGGGTCAT
CGAGCGCTGTGCTTTGGAAATTGAGCATCGGCACGCGGAGAATGCAGAAG
CAAACGACCGCGTCAGCCGTCGCTTGCGGCACCACTAA back to top
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