mRNA_H-paniculata_contig44165.11170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig44165.11170.1
Unique NamemRNA_H-paniculata_contig44165.11170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: G1RFP5_NOMLE (Uncharacterized protein n=1 Tax=Nomascus leucogenys TaxID=61853 RepID=G1RFP5_NOMLE)

HSP 1 Score: 78.2 bits (191), Expect = 1.370e-15
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRG 144
            T+WL+YAE EM+++  NHARN+WDRA+  LPRV QFWYKY+YME   G
Sbjct:  254 TLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLG 301
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A0D9ZL17_9ORYZ (Uncharacterized protein n=2 Tax=Oryza TaxID=4527 RepID=A0A0D9ZL17_9ORYZ)

HSP 1 Score: 77.4 bits (189), Expect = 2.560e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRGVVCS 156
            T+W+ YAE EMR+ F NHARN+WDRAV++LPRV+Q WYKY +ME   G V +
Sbjct:  114 TLWISYAELEMRNGFANHARNLWDRAVSVLPRVDQLWYKYIHMEELLGAVAN 165
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A0D3FW52_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3FW52_9ORYZ)

HSP 1 Score: 77.4 bits (189), Expect = 2.570e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRGVVCS 156
            T+W+ YAE EMR+ F NHARN+WDRAV++LPRV+Q WYKY +ME   G V +
Sbjct:  114 TLWISYAELEMRNGFANHARNLWDRAVSVLPRVDQLWYKYIHMEELLGAVAN 165
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A1S3F8C7_DIPOR (LOW QUALITY PROTEIN: crooked neck-like protein 1 n=1 Tax=Dipodomys ordii TaxID=10020 RepID=A0A1S3F8C7_DIPOR)

HSP 1 Score: 76.6 bits (187), Expect = 4.780e-15
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 IWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRG 144
            +WL+YAE EM+++  NHARNVWDRA+  LPRV QFWYKY+YME   G
Sbjct:   56 LWLKYAEMEMKNRQANHARNVWDRAITALPRVSQFWYKYTYMEELLG 102
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A1B6HCS7_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6HCS7_9HEMI)

HSP 1 Score: 73.9 bits (180), Expect = 2.830e-14
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    7 WLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRG 144
            WL+Y E EMR++  NHARN+WDRAV +LPR  QFWYKY+YME   G
Sbjct:   22 WLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLG 67
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A2G9HXZ8_9LAMI (Cell cycle control protein (Crooked neck) n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HXZ8_9LAMI)

HSP 1 Score: 74.3 bits (181), Expect = 3.110e-14
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRGVV 150
            T+WL+YA+FEM++KF NHARN+WDRA  LLP V+Q WYK  +ME   G V
Sbjct:  100 TLWLKYADFEMKNKFVNHARNIWDRATELLPTVDQLWYKSIHMEEMLGNV 149
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A6G1BZ39_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BZ39_9ORYZ)

HSP 1 Score: 74.3 bits (181), Expect = 3.110e-14
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYME 132
            ++W+ YAE EMR+ F NHARNVWDRAV++LPRV+Q WYKY +ME
Sbjct:  112 SLWVNYAELEMRNGFVNHARNVWDRAVSVLPRVDQLWYKYIHME 155
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: A0A834LRJ6_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834LRJ6_RHOSS)

HSP 1 Score: 73.9 bits (180), Expect = 4.240e-14
Identity = 31/48 (64.58%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 TIWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRG 144
            T++LRYA FEMR++F +HARNVWDRAV++ PRV+Q WYKY++ME   G
Sbjct:   67 TLFLRYAAFEMRNEFLSHARNVWDRAVSVFPRVDQLWYKYAHMEEMIG 114
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: F4JC74_ARATH (Crooked neck protein, putative / cell cycle protein n=6 Tax=Arabidopsis TaxID=3701 RepID=F4JC74_ARATH)

HSP 1 Score: 72.4 bits (176), Expect = 1.480e-13
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    4 IWLRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRG 144
            +W++YA+FEM++K  N ARNVWDRAV+LLPRV+Q WYK+ +ME   G
Sbjct:   93 VWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLG 139
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BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Match: H9JG12_BOMMO (Uncharacterized protein n=1 Tax=Bombyx mori TaxID=7091 RepID=H9JG12_BOMMO)

HSP 1 Score: 70.9 bits (172), Expect = 5.000e-13
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:   10 LRYAEFEMRSKFPNHARNVWDRAVALLPRVEQFWYKYSYME 132
            L+Y E EMR++  NHARN+WDRAV +LPRV QFWYKY+YME
Sbjct:    5 LKYTEMEMRNRQVNHARNLWDRAVTILPRVSQFWYKYTYME 45
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig44165.11170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G1RFP5_NOMLE1.370e-1564.58Uncharacterized protein n=1 Tax=Nomascus leucogeny... [more]
A0A0D9ZL17_9ORYZ2.560e-1561.54Uncharacterized protein n=2 Tax=Oryza TaxID=4527 R... [more]
A0A0D3FW52_9ORYZ2.570e-1561.54Uncharacterized protein n=1 Tax=Oryza barthii TaxI... [more]
A0A1S3F8C7_DIPOR4.780e-1565.96LOW QUALITY PROTEIN: crooked neck-like protein 1 n... [more]
A0A1B6HCS7_9HEMI2.830e-1465.22Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]
A0A2G9HXZ8_9LAMI3.110e-1462.00Cell cycle control protein (Crooked neck) n=1 Tax=... [more]
A0A6G1BZ39_9ORYZ3.110e-1468.18Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
A0A834LRJ6_RHOSS4.240e-1464.58Uncharacterized protein n=1 Tax=Rhododendron simsi... [more]
F4JC74_ARATH1.480e-1361.70Crooked neck protein, putative / cell cycle protei... [more]
H9JG12_BOMMO5.000e-1370.73Uncharacterized protein n=1 Tax=Bombyx mori TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig44165contigH-paniculata_contig44165:933..1088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog4565.Traes_7AL_03E492457.1
Preferred nameCRNKL1
KEGG koko:K12869
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071011,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.HAT (Half-A-TPR) repeats
EggNOG OGs37MF9@33090,3G99I@35493,3IB4I@38820,3KR06@4447,KOG1915@1,KOG1915@2759
COG Functional cat.D
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Exons1
Model size156
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.2700508-CDS-H-paniculata_contig44165:932..10581622930332.2700508-CDS-H-paniculata_contig44165:932..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44165 933..1058 -
1691481245.399543-CDS-H-paniculata_contig44165:932..10581691481245.399543-CDS-H-paniculata_contig44165:932..1058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig44165 933..1058 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.2889347-UTR-H-paniculata_contig44165:1058..10881622930332.2889347-UTR-H-paniculata_contig44165:1058..1088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44165 1059..1088 -
1691481245.4169123-UTR-H-paniculata_contig44165:1058..10881691481245.4169123-UTR-H-paniculata_contig44165:1058..1088Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig44165 1059..1088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig44165.11170.1prot_H-paniculata_contig44165.11170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig44165 933..1058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig44165.11170.1

>prot_H-paniculata_contig44165.11170.1 ID=prot_H-paniculata_contig44165.11170.1|Name=mRNA_H-paniculata_contig44165.11170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=42bp
MRSKFPNHARNVWDRAVALLPRVEQFWYKYSYMEVSRGVVCS
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mRNA from alignment at H-paniculata_contig44165:933..1088-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig44165.11170.1 ID=mRNA_H-paniculata_contig44165.11170.1|Name=mRNA_H-paniculata_contig44165.11170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig44165:933..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGATATGGCTGCGCTACGCGGAGTTCGAGATGAGAAGCAAGTTTCCCAA
CCACGCTAGAAACGTGTGGGACCGAGCTGTGGCCCTGCTGCCGAGGGTGG
AGCAGTTCTGGTACAAGTATAGCTACATGGAGGTAAGCAGGGGAGTTGTA
TGTAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig44165:933..1088-

>mRNA_H-paniculata_contig44165.11170.1 ID=mRNA_H-paniculata_contig44165.11170.1|Name=mRNA_H-paniculata_contig44165.11170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=252bp|location=Sequence derived from alignment at H-paniculata_contig44165:933..1088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAAGCAAGTTTCCCAACCACGCTAGAAACGTGTGGGACCGAGCTGT
GGCCCTGCTGCCGAGGGTGGAGCAGTTCTGGTACAAGTATAGCTACATGG
AGGTAAGCAGGGGAGTTGTATGTAGCATGAGAAGCAAGTTTCCCAACCAC
GCTAGAAACGTGTGGGACCGAGCTGTGGCCCTGCTGCCGAGGGTGGAGCA
GTTCTGGTACAAGTATAGCTACATGGAGGTAAGCAGGGGAGTTGTATGTA
GC
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