mRNA_H-paniculata_contig4416.11169.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4416.11169.1
Unique NamemRNA_H-paniculata_contig4416.11169.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4416.11169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4416contigH-paniculata_contig4416:6626..11638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size986
Cds size966
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4416.11169.1prot_H-paniculata_contig4416.11169.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4416 6644..11638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.1357386-UTR-H-paniculata_contig4416:6625..66431622930332.1357386-UTR-H-paniculata_contig4416:6625..6643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4416 6626..6643 +
1691481245.346893-UTR-H-paniculata_contig4416:6625..66431691481245.346893-UTR-H-paniculata_contig4416:6625..6643Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4416 6626..6643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930332.153454-CDS-H-paniculata_contig4416:6643..66621622930332.153454-CDS-H-paniculata_contig4416:6643..6662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 6644..6662 +
1691481245.3585606-CDS-H-paniculata_contig4416:6643..66621691481245.3585606-CDS-H-paniculata_contig4416:6643..6662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 6644..6662 +
1622930332.170752-CDS-H-paniculata_contig4416:8532..86641622930332.170752-CDS-H-paniculata_contig4416:8532..8664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 8533..8664 +
1691481245.3688807-CDS-H-paniculata_contig4416:8532..86641691481245.3688807-CDS-H-paniculata_contig4416:8532..8664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 8533..8664 +
1622930332.19562-CDS-H-paniculata_contig4416:9487..96061622930332.19562-CDS-H-paniculata_contig4416:9487..9606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 9488..9606 +
1691481245.3808093-CDS-H-paniculata_contig4416:9487..96061691481245.3808093-CDS-H-paniculata_contig4416:9487..9606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 9488..9606 +
1622930332.215323-CDS-H-paniculata_contig4416:10942..116381622930332.215323-CDS-H-paniculata_contig4416:10942..11638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 10943..11638 +
1691481245.3895369-CDS-H-paniculata_contig4416:10942..116381691481245.3895369-CDS-H-paniculata_contig4416:10942..11638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4416 10943..11638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4416.11169.1

>prot_H-paniculata_contig4416.11169.1 ID=prot_H-paniculata_contig4416.11169.1|Name=mRNA_H-paniculata_contig4416.11169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=322bp
MGSSGGGGKRKPEWAYLTANIRVPPPLRPGPRGPNRKKGSGGSKGSGGTH
GEGNPGGDDHLLGVGEAFFCRGLPKAILWSDVARQFASIMDPSGTNPPPS
SPGSRVPAGGGGGTGGGDTPVPNSKSKSGYSATSFPPSLPSTPTQALANS
SSFPSLSSPPQGQVSPHPPMTSRASNNTSVGVAAGCIANGVAAAAAAAAV
EEAAAAAAPRAGASVEADALAAAQALRIRVPHEESESDQRDGGTFAAGVQ
RESASLSTSTGSTARPQRATSNASSTASTAGSSGGSGSGPTLERQHSSTS
SASASCPEITAPRFWVVQGVGV
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mRNA from alignment at H-paniculata_contig4416:6626..11638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4416.11169.1 ID=mRNA_H-paniculata_contig4416.11169.1|Name=mRNA_H-paniculata_contig4416.11169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5013bp|location=Sequence derived from alignment at H-paniculata_contig4416:6626..11638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGAATTCCTTGCTGGGGATGGGGTCTAGCGGTGGAGGTACGTATCTCTC
TCTATATGTATATATAGATATATATATATATTTTTTTTTTTTGTGTATTT
GCGGTATAGACTGGGCACAATGTATAGTATGGTCAATGCCACTACAGAAG
GCAGTTCTATGGTGTGTTGTGATGATAATATATTGATTTGGTGACAAGCC
AACAAGGCCCGCGTCAACTGGTAGTAGTGACTAGTGACTGTCGCGATCGA
TCCTCCTTATCTCGGGGGGTGGTTGGTTGGTTGGTTGCCTTAATTTATAC
CATGACACATCAAAATTGTAGAAATATAGAGCATTAATACCAAGTCGAGG
TTGGTCCGTCTTGAAGTCTAATTTCGCCTTGAGTATGACCGATCTCCTTT
TATCGGGGTAGACACTGTACTAGTGTATCACATTCCATCCATGTCTGTAT
TCTATTGTATTGTATGCATGTATGTACCGTTTTCCCCACGTGTTGTGTAG
ATGTATACATGTGCAATGTGCTGTGGACTTGAACATAGGAAGGATGGCAG
ATGGGTCAACATTGGGTTGACTGATTAATCGGGTGTAATGCTGTTGTAGG
TGTGTGCTGAGTCTGATTTGCTATGGCGCTGCTTACTATACTCTGCTTCG
GAGAAACATCGATGTACATGTACATGTAGTATATCCGTTAGGTACATTCA
CATTCGGTGTCGTCGCCTTGACTTCGACTTGCATCGAGTAGCATTTAATA
GACCATTGACTTTTCGTCGTCGCCGACTTTTGTAGAATAGTAATAGTAAT
AGTAAAGACGAAGTAATGTCACATAGATCTGCCGATAATATTCGTACGAA
CTCGACTCGGTAAGAACGTCTAAAAACCGTCGATAGGCCAAATGGCACGA
ACCAATGCGTCCCGTATCGCCATTATGGGGTTCCCTGGAACCGTGTAGAC
ACCCCAGAATGCGCTGCATGCTCAGATCGACCATCCGGCCACTTTCAATA
TTTGGCCCTTTATCATGACCCTGTCTAACTCAGGCCTGCTCTCTGCTACC
AGGAGATAATTTGGTGCCCATTTGAAGATTACAAATCTCATTTCGGATTA
TCCTGAAAGTTGTTGTGGCTGTTTGTTACTGTCGACACTTGGTCGAGCAG
AACGACCGATTGAGTCGACTCCGAATTTGTCGTTAGTGAAAGGTTATGAC
AACCAAGAGCACAAGGGAGAGAACAAGTACAAGAAAATGTATGGAGTTTT
TGCGTCTCCATAGATTGCTCCATTTCTTTTAGTCGTTTGTTGTTACGAAA
TATTTTCGTTTTTTTTTTTTCTTACGATCGAACTGCCCCGAAAAACCTTG
AACGGGTTATTCGCACACCGATTCTAGGATTTTTTAATTGAAATTTTGAG
GTGATGAGTACATTGTACATTCAAAGGTTTTTATCGATGGCGTGCTTTCT
TTGGGGAAGGAGGGGGCAGGGTAATATGGATATGAATGGATCTCGAACGG
AAAATAATGGGAAAACCTCAAAATCGAAAATAAAAAAATGTCAATTGTCA
GATATCATCATCACTGTAAAAATCTTAATGTTTAAGACGCGTGCTCTTCA
TCTATGCGATATTTTAAGTCCCAAATCCTGAAATAGGCCTGCGAAGAGCG
TGAATGATTCTACCAAAATGTCTGCCTGTCATTGGTCATTATTGGGCTCA
CCCTACAAAATTATGTAAGTTATGCTCATGATCTTAAAACAATGTTTCAT
TCTTGGGAACGTCTGTATATATGCCAGTGTGTTTTATGTCCCCTGTTTTT
TGTACTATACATCGTTTTGACCAATTTTAGCTGATGATTTCTGTTTCTGG
TACCTGGTTTGTCTTTTCCTCTTTTTTTTTTTCGATATTAAAAATTAAAA
ATTACAGGCGGAAAAAGGAAGCCAGAATGGGCTTATCTCACGGCCAACAT
TCGCGTACCACCACCGTTACGACCCGGGCCGCGTGGACCGAACCGAAAAA
AGGGCAGTGGCGGCAGCAAAGGAAGCGGAGGAACTCATGGTAAATTATAT
ACATATGTATCAAAACAGCATACAACCTTCCTAACACCACCCTCTGTTCC
TACCGAACGACTGCATCCTCCCTCCGTCATCATCCTCGCGCTGAATCAAA
TCGACAACACTTTTATAGCAACATTTTTATGGATTCTTGACCCCCAAACG
CAGTTTAATGGATTCTTATAATTTTGTAACAATTCCACCATAACAGTAAC
CCCGCCAGCTGTCACATGCCACCACGCTTCCACGAAAGTACGGACTGACT
TAGGACTTAGTGGGCCGTTGTATCTATCGTACTCGCGCCGTGACTGATGT
GGTGTCGTATGTTTTCCACATGGGAATCTGCACGCACTTGCTGTATGAAC
GGTTGTGTTGTATACTTCCTGTATGCTTGCATAGGCGAGGTTTGGAATAG
CACCTACCTGCCAAGCGTTTGTGATTTCAGTGAATCAAACGTTTGAAGCT
ACTAGTTGCTCGTGTTTGATATTGTTTGCCTTTTACCGTGACTTTTCGTA
TTGACTTTTTAAAAGTATATATTCATATTTATATGCATGCACATAAATTG
GTTTGCCCCCTTGGATAAAAACTATCCCTGTGGATTCATTTTTGTACTGT
TATCGCTGTTTTCACTCGATCGATGAATATATACGAAATATCTTTTTTAC
GTATTGCCCGTCGACTGAAGCGACTCAACTGTCCAGTGTATATTCGCCCG
GAGTCGTGACATATAGTTTTTTCATGATACATTAGTTGGATACTCAATAC
CTCGTACCCTCCAACTTATTCAAAGCGTCCCGCGTTCATTTGCCTTTGTT
CGACATGTACAGGGGAGGGAAACCCAGGAGGGGATGACCATTTGTTGGGT
GTGGGAGAGGCATTCTTCTGCAGGGGCTTGCCGAAGGCCATCCTCTGGTC
GGACGTGGCCCGTCAATTTGCGTCTATCATGGTAGGTAGCTCTGTTCATC
TTGTCATTGTCTCTCATCAACGTAGGGACGCGCGGTACAATCATCTTTCA
TCCTGTTAGGTTCCGTTGTGAAATAAATTGGACGATGATGCTTCGACTTG
TTGGGGAGTGAAGCGATTGGGGGAAAATGGGGGCTTTTAGGCGACTGACA
TATTTTACGGTACGGTATACAACAGCCACAGAGTTTCTTCCGCTATGGTA
TGTGTTCCGTGTTTTGGTGAAACGCGTGTAAATTATTAGCAGGACAAGTA
GGATAAGTAACGTATTAATATCTGTCTACTTGTTAGGTGAAGGAACATGG
TTGCCTTGGGGTAGCAGAGTTCTTAGCGTTTATAGTGGAGGCGCGAGCCC
CCATCGTCAGCGCCTTGAGGCCTCGGCCTCAAGACCCTTCATCCTCCACG
TTCCAAAGGGCAAATGGCTGGGGTATCCCGTGTACTGGGCAATCTAGGAG
ACAGGATTACGGTTTTAATGGGTGCCTAACATAACCTGCTCACCTGATCG
TGGGCGGGCTGGTACCTATCTACGGTGTGCGACCCGTCGGAGCAGGGAAA
CCGAAGACCCGATGAACGAGATACTGACCGGTACTGATTGCGTTAGCAAA
AAGCCTTCTGACGAGATCCGGGGGGGGGGGAGCGTTAGTTGAGCTTTTCT
GAAAACTGTCTACTTGTACGCCCATCGACCATCAACCATGCGAAGAACGT
CAAGTTGGGAAAAAAAAGTGCCAGCGTCAAGTCGTGCCTGCCTATCCGTC
AAAATGTTCCTGTCAATGACAGCTAATGTTGCTTCATCTAGAACACAACC
GTCAGCCGTAGCTTGAATCAAATGGTGTGACGATGGTCAATTTGTCACTT
TTGTACATTGGACATTGAACATTGGAGGTGGACAAAGTGTTGTGGTGTGT
GTCCTGTGTGTCTTCTATGATACGGAAAGGAACGTCGTGGTTGATGTTTA
TGATGCTCAACCCCAGAACAGCTACTGTGCTCAGTCAGTCATTCAGTTAC
TTCACTCGGTCGGTACATCATTGAAACATTAAAGCATTAAACGAGTACAT
GGTCAGAGCGATTTAAACGGATAGATATACAGGGCATACCAGCTGTTGTA
ATGGTGCTGTGATTGACCGTGTTTGCTCACTCGGTTTCTTGCTTGATCTA
GTTTTCGCTTTGGCACCTTGTACAAGCTAGCTAGCTTTTGACTTGGCCCT
TAACAAATCTCCTTAACAAACGTCCTGGGATGCGCTTTTCTTTCCGCTCC
GCCCCCACGGTGACTTGAATGTTTTTGCCGTATTTTTGCTTTTCCTATCC
ATCGTGGCCACGGACAGGATCCGAGCGGAACAAACCCGCCGCCATCGTCC
CCCGGTTCCAGAGTACCAGCAGGCGGCGGTGGCGGTACAGGCGGAGGAGA
TACACCAGTCCCAAACAGCAAGAGCAAGAGCGGTTACAGCGCAACCTCAT
TTCCGCCCTCTTTGCCTTCAACTCCAACGCAGGCGCTTGCGAACAGCTCC
TCGTTTCCTTCCCTCTCTTCTCCTCCTCAAGGGCAAGTTTCCCCTCATCC
CCCTATGACCTCAAGGGCTAGTAATAACACCAGCGTTGGCGTCGCTGCCG
GCTGTATAGCGAACGGCGTTGCGGCGGCAGCTGCAGCGGCAGCAGTCGAG
GAGGCAGCAGCAGCAGCAGCACCGCGAGCGGGAGCGTCGGTAGAAGCCGA
CGCTCTGGCCGCGGCGCAAGCGCTCCGAATCAGGGTACCTCACGAAGAAT
CGGAAAGCGACCAACGTGACGGTGGCACCTTTGCCGCCGGCGTCCAACGC
GAGTCCGCCTCGTTATCGACGTCAACTGGGTCCACAGCACGACCACAACG
GGCTACCAGTAATGCTAGTAGTACAGCATCGACCGCAGGGAGTAGTGGGG
GCAGTGGCAGTGGGCCTACGCTTGAAAGGCAACACAGCTCGACGTCGTCG
GCGAGTGCTAGCTGCCCCGAGATTACCGCACCGAGATTTTGGGTTGTGCA
GGGTGTTGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig4416:6626..11638+

>mRNA_H-paniculata_contig4416.11169.1 ID=mRNA_H-paniculata_contig4416.11169.1|Name=mRNA_H-paniculata_contig4416.11169.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig4416:6626..11638+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTCTAGCGGTGGAGATGGGGTCTAGCGGTGGAGGCGGAAAAAGGA
AGCCAGAATGGGCTTATCTCACGGCCAACATTCGCGTACCACCACCGTTA
CGACCCGGGCCGCGTGGACCGAACCGAAAAAAGGGCAGTGGCGGCAGCAA
AGGAAGCGGAGGAACTCATGGCGGAAAAAGGAAGCCAGAATGGGCTTATC
TCACGGCCAACATTCGCGTACCACCACCGTTACGACCCGGGCCGCGTGGA
CCGAACCGAAAAAAGGGCAGTGGCGGCAGCAAAGGAAGCGGAGGAACTCA
TGGGGAGGGAAACCCAGGAGGGGATGACCATTTGTTGGGTGTGGGAGAGG
CATTCTTCTGCAGGGGCTTGCCGAAGGCCATCCTCTGGTCGGACGTGGCC
CGTCAATTTGCGTCTATCATGGGGAGGGAAACCCAGGAGGGGATGACCAT
TTGTTGGGTGTGGGAGAGGCATTCTTCTGCAGGGGCTTGCCGAAGGCCAT
CCTCTGGTCGGACGTGGCCCGTCAATTTGCGTCTATCATGGATCCGAGCG
GAACAAACCCGCCGCCATCGTCCCCCGGTTCCAGAGTACCAGCAGGCGGC
GGTGGCGGTACAGGCGGAGGAGATACACCAGTCCCAAACAGCAAGAGCAA
GAGCGGTTACAGCGCAACCTCATTTCCGCCCTCTTTGCCTTCAACTCCAA
CGCAGGCGCTTGCGAACAGCTCCTCGTTTCCTTCCCTCTCTTCTCCTCCT
CAAGGGCAAGTTTCCCCTCATCCCCCTATGACCTCAAGGGCTAGTAATAA
CACCAGCGTTGGCGTCGCTGCCGGCTGTATAGCGAACGGCGTTGCGGCGG
CAGCTGCAGCGGCAGCAGTCGAGGAGGCAGCAGCAGCAGCAGCACCGCGA
GCGGGAGCGTCGGTAGAAGCCGACGCTCTGGCCGCGGCGCAAGCGCTCCG
AATCAGGGTACCTCACGAAGAATCGGAAAGCGACCAACGTGACGGTGGCA
CCTTTGCCGCCGGCGTCCAACGCGAGTCCGCCTCGTTATCGACGTCAACT
GGGTCCACAGCACGACCACAACGGGCTACCAGTAATGCTAGTAGTACAGC
ATCGACCGCAGGGAGTAGTGGGGGCAGTGGCAGTGGGCCTACGCTTGAAA
GGCAACACAGCTCGACGTCGTCGGCGAGTGCTAGCTGCCCCGAGATTACC
GCACCGAGATTTTGGGTTGTGCAGGGTGTTGGGGTGGATCCGAGCGGAAC
AAACCCGCCGCCATCGTCCCCCGGTTCCAGAGTACCAGCAGGCGGCGGTG
GCGGTACAGGCGGAGGAGATACACCAGTCCCAAACAGCAAGAGCAAGAGC
GGTTACAGCGCAACCTCATTTCCGCCCTCTTTGCCTTCAACTCCAACGCA
GGCGCTTGCGAACAGCTCCTCGTTTCCTTCCCTCTCTTCTCCTCCTCAAG
GGCAAGTTTCCCCTCATCCCCCTATGACCTCAAGGGCTAGTAATAACACC
AGCGTTGGCGTCGCTGCCGGCTGTATAGCGAACGGCGTTGCGGCGGCAGC
TGCAGCGGCAGCAGTCGAGGAGGCAGCAGCAGCAGCAGCACCGCGAGCGG
GAGCGTCGGTAGAAGCCGACGCTCTGGCCGCGGCGCAAGCGCTCCGAATC
AGGGTACCTCACGAAGAATCGGAAAGCGACCAACGTGACGGTGGCACCTT
TGCCGCCGGCGTCCAACGCGAGTCCGCCTCGTTATCGACGTCAACTGGGT
CCACAGCACGACCACAACGGGCTACCAGTAATGCTAGTAGTACAGCATCG
ACCGCAGGGAGTAGTGGGGGCAGTGGCAGTGGGCCTACGCTTGAAAGGCA
ACACAGCTCGACGTCGTCGGCGAGTGCTAGCTGCCCCGAGATTACCGCAC
CGAGATTTTGGGTTGTGCAGGGTGTTGGGGTG
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