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Homology
BLAST of mRNA_H-paniculata_contig4416.11168.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 5.080e-10 Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1
Query: 1 QMELEAARLSLCEEAILRDLLRRCQIFLPPGYARADAVRKLR 126
Q+EL+AARL+LCEEA+LRDLLRRC I LPPGYARADAV KLR
Sbjct: 1232 QLELDAARLALCEEAVLRDLLRRCGIALPPGYARADAVNKLR 1273
BLAST of mRNA_H-paniculata_contig4416.11168.1 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 9.320e-10 Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 1
Query: 4 MELEAARLSLCEEAILRDLLRRCQIFLPPGYARADAVRKLR 126
+ELEAARL+LCEEA+LRDLLRRC I LPPGYARADAV KLR
Sbjct: 1476 LELEAARLALCEEAVLRDLLRRCGIALPPGYARADAVNKLR 1516
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1101 |
| Cds size | 1098 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4416.11168.1 >prot_H-paniculata_contig4416.11168.1 ID=prot_H-paniculata_contig4416.11168.1|Name=mRNA_H-paniculata_contig4416.11168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=366bp
MELEAARLSLCEEAILRDLLRRCQIFLPPGYARADAVRKLRSRAPSPGAG VGTVGRGRGGGTQAGDGNASAGRQGAYANTPAKPPALGRPTAVAVVATTS SPLSTGTAGGPIPSGRKDSYSFSLGSSSNNNNNNTSSSGRQSKKGSRGKT GWRGGKVLTGRAAGSNRRGGKRPRSEGSVEDDTSDDDLASLSDSSHSSIR RSSSGSSHRRPRGSPLLFAMADADASYFPPHQQAFTPNLTAAEALRLATA PDEPPEDNPAAAPDSMTVDAAGAPVAAAGILATSAPLTPLTSAMSHNSAA AAAGSTGTAGGDGSLPVSSGAASAASAASEDSSAIVSTTGGWAHEVGYGA IIGVAHGGAGAGAGAG back to topmRNA from alignment at H-paniculata_contig4416:854..6544+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig4416.11168.1 ID=mRNA_H-paniculata_contig4416.11168.1|Name=mRNA_H-paniculata_contig4416.11168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5691bp|location=Sequence derived from alignment at H-paniculata_contig4416:854..6544+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGATGGAGCTGGAAGCCGCGCGTCTCTCGTTGTGCGAAGAGGCTATCCT
ACGAGACTTGCTTCGAAGGTGCCAAATTTTCCTTCCTCCTGGCTATGCCC
GCGCGGACGCTGTAAGAAAGCTGAGAAGCAGGGCGCCTTCACCTGGGGCG
GGTGTTGGTACCGTGGGAAGGGGCAGAGGAGGGGGGACTCAGGCTGGCGA
TGGTAATGCTTCGGCGGGTAGACAAGGTGGGTAAAGTGTAGAGCTAGGTA
GGTAAGTATCTTGTGTGTTGCCTGCGTTCCACCAGAGGTGACAAGTGTAA
TCGCCCATTGTTGTGTTCTGTTTTGCTTGTAGAAATTACAAATTGGTATG
GAAGCATCGGTAAAGGTTTTTGCCTCAGCCTTCTGGGGGTTAAAAAAAAG
AAGAAAAAAAATGCACATGTACTGAGTATTTTTTTTTAAAAGAAGAAAAA
AAATGCACATTAGTGGTAGAACACGTAAGGTTAACATGTGTGCCATTAAT
TGGTACTTAACTTGCGTCAGTTTGCTGCTAATATTGTTCTCGTAGTTATA
AGAACACGTCGTCGTGATCATTTCTGCCTGCCTTATCGGCAAAACTACTA
GTAGCCAAGAAACAACTTATTACCCCATACCTTAATTTAACTTACCCGAC
GTCGATTCATCACCGTCCCCTAATATTACGTCATGTCCCGCAAAGGACTG
TTGTAATTGTGCACGTTAAACAGTGTTACAGTATGATGTTACGTGTTGTC
GAGTTAATTTGCTAGGCAACGTTTGAGAGAAACCAATCAATCGCTTCAAC
ATTTGATACTCTTGAAAAACACCCTAATTGAGGTGATAGAGGGTTGGAAA
ACTTCTCGACGACGACCGCCTTACCGCATGCATCATCTTCTAAAATTATT
TGATTCTCTCGGAAGGCTCTCCTATTTTGTGTTTTTGAAGGAGCTTTCTT
ACACTGGAAATATAGCGGTTTATTATCCGCACGCGAAAATGCGTCATGCG
GCCGAAACCTCGGGTGTTCCACACGCTGTCGTGATGTGTACTTCCTATTG
ACGTGCGCAAATATTCTTCTATAAATATCTTTTTCGTACATGGAAGGATC
GTAAGAACTGAGGATTGTATTGCCGGTGGCGTTGTTCATACTGTTCGAGC
ACGATAGCGATGAATCGTTTCGGTCTACTAATAGTTTGGGTGAAATATAA
AGTGCCGAAACGACACCAAAAATCTCAATTATCTCTACAAAAACCTCAAA
CTTTTGTAGGCAGCTGCAACGTTGACTAGGTTGGATACGATTGGATATAA
TCGTATTCATCGTTGGACACAGACGGTGCGATTAATTGTGGAGCATGATC
AAGAAGCACGGAAGAACGCTTGATGATGATCACGATGACGAACTGACCTC
TGCTCGTCCCGTAATGAAGGTGATGGGATTTACACTCTATCACGTCGGTA
GGTCATGGGTTCAATTCTCGGAATACGTTTTTTTTTCCTCAAACTTGCGA
TAAATTTTAGGGCGCTGGTCAAAAGGCGATACACCGGGCGGAAAATGGTC
CGAACCCAGTGCAGTTTCCCCCCATAATTCACGGTGACACCAAATATGAC
AAGCTCCACCGGTAACTCACACGGCACACTCTCACACACCCACGGCAACC
ATTCGTCGAAGAATTTCTAGAAAAGAACGCGTTTTGGCCTCGTACCACCG
CCGCAAAGTTGGTGATTTCCTGAGGGCACTACATTATACTGGTTGTAGAC
CAAAAAAGCACCCAATGTAACGATTGTAGACCAAACTGTCCTGGTTGTAG
ACCAATTTGGCAACCGGGATTTCCCTACATGCTACACACCAACGCAGCCT
ACCGCCGAGGAGAATGTCACTGTTTTCCACAAAGGCTGGACTTTGCTGGC
CCTAACGAGCACCACGCTGGATCTTTTTCTGGCCTTCCCACTGATGAACG
AACTCGAGAAGAAGAAGCATGATACATGCCAGCATCATATACCCAACCAA
GTGTTGTCGGCATTTTAGGCTTGGTTTGTTTCGTTGTTTCAAGAGGAGCC
GGCTAAGTACCATTACCACATAGTCGAAGCTGGCAAATTGGTCAAATGGT
TTGGCGTTGAACAATGTGGACGGCAGAGTGGGCGGGTGGAGAGCAGGGCG
GGAGTCCTTTGTATTTTTTGTGGAATGTCGCGTTTTTTCAGAATGGTATT
GATGGCAGCACCGTGAGATGCGTGGCCATCCAGGAAACGTCGTGATTGTG
CGATGAAAAGGGCGTGTGGGTGTACTGTATTACTGTGCTGTGCTGTGCTG
CTACAGTGCTGACTAGTGCCGTACATGTGGGCAGTAAGAAGCGTTCGATT
TTTCCTTTCGATTGGACAATGCAAACGAAAAGTAAGGTGACGAAAATCTC
CCCAACGCTTAGAACAGCCCCTAGAGCAAAATTCACCGGGGCGCGGACGT
TTAGGGGCGATCGTCTCGATGACGACGTGATGCTATCTAATGATGAGGGG
ATGTCACCCTAAAGACCCCCGAGAAGAGAGGCTGGTTGATACACGAACAA
ATTTTTACCCACTACCCGGTGCATTACCGGTGGTGCTGTTTTGATGCAAT
TTCCTCCTCGCACAAAGATACCCCGCGCTGAGGTATGCGTGTATCAAGCT
CCCCACCATGTTTGTGCTGCAGATGGAAAACAACTTTCAAGGAAGTATTT
GTTGGCTAACGAGAGAGGTCCAGGCTATAGAGCTCTGTAGCGCAACCAAT
TCGAAGAATCATACTAGTACCGTTCTGAAAAAATACCCAATTCATATCTC
TTGCTTCAATCAGTTGTCTGTTGTAATCGTATATAGCAGGTCCGTCTTCT
TGCTGTGTGTAGCAGTAAGTAGACTGCGTATTGTCCTAAGCGAAAATCGG
AATAGTTGTTTGACCAATTTGCCAGCTTTGACTGTGTGGTAATGGTACTT
AGCCGGCTCCTCTTGAAACAACACAACCAATCAAGCCTAAAATGCCGACA
ACACTTGGTTGGGTATATGATGCTGGCATGTATCATGCTTCTTCTTCTCG
AGTTCTTTCATCAGTGGGAAGGCCAGAAAAAGATCCAGCGTGGTGCTCGT
TAGGGCCAGCAAAGTCCAGCCTTTGTGGAAAACAGTGACATTCTCCTCGG
CGGTAGGCTGCGTTGGTGTGTAGCATGTAGGGAAATCCCGGTTGCCAAAT
TGGTCTACAACCAGGACAGTTTGATCTACAATCGTTAAAACTCTGTGGTC
CACAATCGGTATGCTTTCGTAAATAAATCCCCCAACTCGTTACACTGGGT
GCTTTTTTGGTCTACAACCGGTACAGTGTGGTGCGCTCAGGAAATCACCA
ACTTTGCGGCGGTGGTACGAAGCCAAAACGCGTTCTTTTCTAGTGGTACT
TCGACGAATGACTGCCGTGGGTGTGTGAGAGTGTGCCGTGTGAGTCACCG
GTGGAGCTTGTCGTATTTGGTGTCACCGTGAATTATGGGGGGAAACTGTA
CCGGATTCGGACCTTTTTCCGCCCGGTGTACCGGCTCTGGACCAGCGCCC
TAAATGTGAAATGGAACGGTCAAATTGCACGCAAGTCACGAAAATAGTCG
TCAGAGAAGCTCATACCGCTGTCAATGCCAACGTTGACGAGTGAGAGGGA
CTGCTTCCTCCAACGCGCGACAATACACAAGAAGAACTGAGGCATGACGC
TTCCAGCCTTGGGACCGATGGGTCTCCTCCGTTGACCAATAATAAAAAAG
AAACAGTATTGAGATGAAAAAAAAGACCGAGCAACTGACCCTTGGGACGT
ACGTAACCTAGCGGTAATGCCGCCACCTGCTCGGAACCTCAAATCGCTTT
CTGTTGTTTAGCTGGAGGGCTAGAATGCAGCACACACACACACACACACA
CACATTATATATATATATATATATATATATATATGTATACACACTACATT
GCCACTCTAAACAAGAAATTGTCACCGTGGAGGGGGGCACAAACCAGAAA
CGGTAAAAAGTCTTCAATTACGGTAATACGAATTCTTGATTCTTGATTTT
GATTTTGTGCACACGATTCATTCAGTCACGCTACAATTATAGTGTCCATA
TTGTACCGTAACACGCACCTAGTAACACATAAATCATGGTGTATCGTGTC
TCAACCCCCCCCCCAAGGTGCGTACGCTAATACTCCCGCTAAGCCGCCTG
CTCTTGGAAGACCAACAGCAGTAGCAGTAGTAGCCACCACTTCTTCTCCC
CTGTCCACCGGCACGGCGGGCGGCCCCATTCCCAGCGGCAGAAAGGATTC
GTACAGCTTTTCGCTTGGAAGCAGCAGTAACAACAACAACAACAACACTA
GCAGCAGCGGGCGACAAAGCAAGAAGGGTAGTCGAGGGAAAACGGGCTGG
AGGGGTGGAAAGGTTCTCACGGGACGGGCAGCAGGTTCGAATCGTAGAGG
GGGCAAGCGACCGCGGAGCGAGGGCTCTGTAGAGGTGAGTTACTTAATTA
AGACACTTGGCTAGTCACTTCCCGTGGGTATCACTGTCCTTGTTCCGGGG
GGGTGGGTGGTCAAAGGAACAACTGACACCCTGAATAACGAACTTAACTT
CACTAACCGGTATTCCCCTTAACTTCGTAAGTCACTTAAGGTACAGCTCC
GAAAGTCATAAAATAAATGCCTTGTATCCATGTTAAGGGCATGTAGCCGA
AACTAAATTTCAATTTGTATGCACTTTCAGCAAAATTAGATTATGACCAA
TAAGGAGGGAGACGTTGATACGGTAAATACAGTGGAAAGATTGTCCCCAT
GTAGGGTAACAAGGGTGTGTACTGGTTGTGTTAAGCTACATCTGGTCGCC
GTATTACCGCGTGGTTGCCTCATTCCATATAGGATTTGGATAGCTAGGGA
ATATATATATATATATAGCATTAGCGCCAAGCCGAGTTGGTCAGCCTGAA
ATCGGACTACCCACTGTTATACCTTATACCTTGGTTGGTGTCTTGCAATG
ATACCTTAGTGGTGACTTGTCACTATATGTACATGCCTTATCTTAAGAAC
TCTCAAATACATGCTCCTTGACGTCTGTTTCTGTCCACTTCACTTCACTC
CACTTCACTCCACTCCACTGCACAATACAAAAGGATGATACCTCGGACGA
CGACCTAGCGTCTCTGTCCGACTCATCCCACTCCTCAATCCGACGAAGCA
GCAGCGGCAGCTCACACCGACGTCCACGAGGCTCACCCTTGCTCTTCGCC
ATGGCAGACGCTGACGCCTCCTACTTCCCACCGCATCAACAAGCCTTCAC
TCCCAACCTCACCGCAGCAGAAGCGTTACGGTTAGCCACAGCACCGGACG
AACCTCCAGAGGACAACCCTGCCGCTGCGCCAGATTCAATGACTGTCGAC
GCTGCCGGAGCCCCGGTCGCCGCTGCTGGGATCCTGGCAACGTCGGCCCC
TCTAACCCCGCTAACGAGCGCAATGTCTCACAACAGTGCTGCTGCAGCAG
CAGGTTCGACGGGCACAGCGGGTGGGGACGGATCTCTGCCTGTCAGCAGC
GGTGCTGCTAGTGCTGCGAGCGCTGCGTCGGAAGATTCTTCGGCTATAGT
GTCTACGACGGGAGGGTGGGCGCATGAGGTGGGGTATGGAGCTATCATCG
GTGTTGCGCACGGTGGAGCTGGAGCCGGAGCTGGAGCTGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig4416:854..6544+ >mRNA_H-paniculata_contig4416.11168.1 ID=mRNA_H-paniculata_contig4416.11168.1|Name=mRNA_H-paniculata_contig4416.11168.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at H-paniculata_contig4416:854..6544+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAGCTGGAAGCCGCGCGTCTCTCGTTGTGCGAAGAGGCTATCCTACG AGACTTGCTTCGAAGGTGCCAAATTTTCCTTCCTCCTGGCTATGCCCGCG CGGACGCTGTAAGAAAGCTGAGAAGCAGGGCGCCTTCACCTGGGGCGGGT GTTGGTACCGTGGGAAGGGGCAGAGGAGGGGGGACTCAGGCTGGCGATGG TAATGCTTCGGCGGGTAGACAAGATGGAGCTGGAAGCCGCGCGTCTCTCG TTGTGCGAAGAGGCTATCCTACGAGACTTGCTTCGAAGGTGCCAAATTTT CCTTCCTCCTGGCTATGCCCGCGCGGACGCTGTAAGAAAGCTGAGAAGCA GGGCGCCTTCACCTGGGGCGGGTGTTGGTACCGTGGGAAGGGGCAGAGGA GGGGGGACTCAGGCTGGCGATGGTAATGCTTCGGCGGGTAGACAAGGTGC GTACGCTAATACTCCCGCTAAGCCGCCTGCTCTTGGAAGACCAACAGCAG TAGCAGTAGTAGCCACCACTTCTTCTCCCCTGTCCACCGGCACGGCGGGC GGCCCCATTCCCAGCGGCAGAAAGGATTCGTACAGCTTTTCGCTTGGAAG CAGCAGTAACAACAACAACAACAACACTAGCAGCAGCGGGCGACAAAGCA AGAAGGGTAGTCGAGGGAAAACGGGCTGGAGGGGTGGAAAGGTTCTCACG GGACGGGCAGCAGGTTCGAATCGTAGAGGGGGCAAGCGACCGCGGAGCGA GGGCTCTGTAGAGGTGCGTACGCTAATACTCCCGCTAAGCCGCCTGCTCT TGGAAGACCAACAGCAGTAGCAGTAGTAGCCACCACTTCTTCTCCCCTGT CCACCGGCACGGCGGGCGGCCCCATTCCCAGCGGCAGAAAGGATTCGTAC AGCTTTTCGCTTGGAAGCAGCAGTAACAACAACAACAACAACACTAGCAG CAGCGGGCGACAAAGCAAGAAGGGTAGTCGAGGGAAAACGGGCTGGAGGG GTGGAAAGGTTCTCACGGGACGGGCAGCAGGTTCGAATCGTAGAGGGGGC AAGCGACCGCGGAGCGAGGGCTCTGTAGAGGATGATACCTCGGACGACGA CCTAGCGTCTCTGTCCGACTCATCCCACTCCTCAATCCGACGAAGCAGCA GCGGCAGCTCACACCGACGTCCACGAGGCTCACCCTTGCTCTTCGCCATG GCAGACGCTGACGCCTCCTACTTCCCACCGCATCAACAAGCCTTCACTCC CAACCTCACCGCAGCAGAAGCGTTACGGTTAGCCACAGCACCGGACGAAC CTCCAGAGGACAACCCTGCCGCTGCGCCAGATTCAATGACTGTCGACGCT GCCGGAGCCCCGGTCGCCGCTGCTGGGATCCTGGCAACGTCGGCCCCTCT AACCCCGCTAACGAGCGCAATGTCTCACAACAGTGCTGCTGCAGCAGCAG GTTCGACGGGCACAGCGGGTGGGGACGGATCTCTGCCTGTCAGCAGCGGT GCTGCTAGTGCTGCGAGCGCTGCGTCGGAAGATTCTTCGGCTATAGTGTC TACGACGGGAGGGTGGGCGCATGAGGTGGGGTATGGAGCTATCATCGGTG TTGCGCACGGTGGAGCTGGAGCCGGAGCTGGAGCTGGAGATGATACCTCG GACGACGACCTAGCGTCTCTGTCCGACTCATCCCACTCCTCAATCCGACG AAGCAGCAGCGGCAGCTCACACCGACGTCCACGAGGCTCACCCTTGCTCT TCGCCATGGCAGACGCTGACGCCTCCTACTTCCCACCGCATCAACAAGCC TTCACTCCCAACCTCACCGCAGCAGAAGCGTTACGGTTAGCCACAGCACC GGACGAACCTCCAGAGGACAACCCTGCCGCTGCGCCAGATTCAATGACTG TCGACGCTGCCGGAGCCCCGGTCGCCGCTGCTGGGATCCTGGCAACGTCG GCCCCTCTAACCCCGCTAACGAGCGCAATGTCTCACAACAGTGCTGCTGC AGCAGCAGGTTCGACGGGCACAGCGGGTGGGGACGGATCTCTGCCTGTCA GCAGCGGTGCTGCTAGTGCTGCGAGCGCTGCGTCGGAAGATTCTTCGGCT ATAGTGTCTACGACGGGAGGGTGGGCGCATGAGGTGGGGTATGGAGCTAT CATCGGTGTTGCGCACGGTGGAGCTGGAGCCGGAGCTGGAGCTGGA back to top
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