mRNA_H-paniculata_contig4412.11164.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4412.11164.1
Unique NamemRNA_H-paniculata_contig4412.11164.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4412.11164.1 vs. uniprot
Match: A0A6H5K715_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K715_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.610e-8
Identity = 33/50 (66.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 AHAVRSDPAAVALR--VETLASGLRDLGKRVDCKGDTVAMERVLQGKVDK 144
            AHAVRSDPAAVALR  +ET++SGL  L KRVD K    A ER L+ KVDK
Sbjct:   94 AHAVRSDPAAVALRSRIETISSGLEGLSKRVDNKASASATERALEAKVDK 143
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BLAST of mRNA_H-paniculata_contig4412.11164.1 vs. uniprot
Match: D8LGB7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB7_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.250e-7
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 AHAVRSDPAAVALRVETLASGLRDLGKRVDCKGDTVAMERVL 126
            AHAVRSDPAAVALR+ET++SGL  L KRVD K    A ER L
Sbjct:  164 AHAVRSDPAAVALRIETISSGLEGLSKRVDHKASASATERAL 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4412.11164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K715_9PHAE3.610e-866.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGB7_ECTSI3.250e-769.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4412contigH-paniculata_contig4412:8624..9750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size217
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4412.11164.1prot_H-paniculata_contig4412.11164.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4412 8624..9750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.6324034-CDS-H-paniculata_contig4412:8623..86641622930331.6324034-CDS-H-paniculata_contig4412:8623..8664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 8624..8664 +
1691481245.1080813-CDS-H-paniculata_contig4412:8623..86641691481245.1080813-CDS-H-paniculata_contig4412:8623..8664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 8624..8664 +
1622930331.6500645-CDS-H-paniculata_contig4412:8960..90631622930331.6500645-CDS-H-paniculata_contig4412:8960..9063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 8961..9063 +
1691481245.1168156-CDS-H-paniculata_contig4412:8960..90631691481245.1168156-CDS-H-paniculata_contig4412:8960..9063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 8961..9063 +
1622930331.6722531-CDS-H-paniculata_contig4412:9678..97501622930331.6722531-CDS-H-paniculata_contig4412:9678..9750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 9679..9750 +
1691481245.127384-CDS-H-paniculata_contig4412:9678..97501691481245.127384-CDS-H-paniculata_contig4412:9678..9750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 9679..9750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4412.11164.1

>prot_H-paniculata_contig4412.11164.1 ID=prot_H-paniculata_contig4412.11164.1|Name=mRNA_H-paniculata_contig4412.11164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
AHAVRSDPAAVALRVETLASGLRDLGKRVDCKGDTVAMERVLQGKVDKQT
LDAALSSKAERTDLARIEASAA
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mRNA from alignment at H-paniculata_contig4412:8624..9750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4412.11164.1 ID=mRNA_H-paniculata_contig4412.11164.1|Name=mRNA_H-paniculata_contig4412.11164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1127bp|location=Sequence derived from alignment at H-paniculata_contig4412:8624..9750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCATGCCGTTCGCTCAGACCCGGCGGCCGTGGCGCTAAGGTGAGAAAA
GGCTATGCGTATCAGCCAAGGAAGGCACCTACAGCCAAGGGCGTTCGGTT
GCAAAGGCGCCCAAGCAAGATTATACTCTGCAGATACCCTCGGCCTTGCA
CCATACAGTTTGTTGCGGTGTATAATAACACGGTCTTATATAGTATTATC
AATACGTTCGATATATATCGTTATATCGAAGCTTCAGCGCGATATGGTGT
AACAGACACCGAAGCGAGGTTTGGGGAGATGCCGGGTGCCTGTTTTTCTT
TCTTATGTTGGGATTTTTTTTCAACTTCCACTTGCAGGGTCGAAACGCTG
GCATCCGGATTACGCGACCTGGGCAAGAGGGTAGACTGCAAGGGTGATAC
TGTCGCTATGGAACGTGTGCTTCAGGGAAAGGTTGACAAGGTGAGCGCTG
GTGGGTCATGACAACAGTTCTATAGCCATGCGAGGCATATGTGGTAAGTG
ACGTGGGGCGCCAAGGGTGGCGGTACTACGTTCACACGTGATTACTTCGT
GATTATACTCACGGACTCACATACGCACCTGCTTTCTTAGCCAGGTGGTC
TGTCTCGCTGCTTGTTATCCTTTTTCGTGTTTTTTTTTTGGTACATATCT
GCTGTCTCCTGAGTTCCATCTCGATCAAACAACGAACTCTATTAGCTACA
TATTTTGTCACGTTTTGAAATCGTCCCAATTCGATATCTACGGCGACAGG
ACGGCGAGACCAACTTTGTTGCAATGAGCTAGCACTACAGTAGGCAACAG
TTCCACCTTGGAGTGTCGCGTACTTGATTCACTCGATTCTGGTTTCCACG
GGGATTAACCAACAGGACACCTGGCGACGAAAGGTGTTCGTGCGGTGCTT
CCCCTACTGTACATCCATTGTACACTTGGTAACGCATGCTCACAGTGCTA
TCCCCCCCTGCCCCCAATTATCACGCTCGCCACTTTACGCACACCCCAAC
TCGTTGCGATGTGTCCCGTGTTCGTATCTAAACCACGCCCGACTATTTCT
CGCAGCAAACCTTAGATGCTGCTTTGTCATCCAAAGCCGAGCGGACCGAC
CTGGCCCGCATCGAAGCCTCAGCCGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig4412:8624..9750+

>mRNA_H-paniculata_contig4412.11164.1 ID=mRNA_H-paniculata_contig4412.11164.1|Name=mRNA_H-paniculata_contig4412.11164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig4412:8624..9750+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCATGCCGTTCGCTCAGACCCGGCGGCCGTGGCGCTAAGGCGCATGCC
GTTCGCTCAGACCCGGCGGCCGTGGCGCTAAGGGTCGAAACGCTGGCATC
CGGATTACGCGACCTGGGCAAGAGGGTAGACTGCAAGGGTGATACTGTCG
CTATGGAACGTGTGCTTCAGGGAAAGGTTGACAAGGGTCGAAACGCTGGC
ATCCGGATTACGCGACCTGGGCAAGAGGGTAGACTGCAAGGGTGATACTG
TCGCTATGGAACGTGTGCTTCAGGGAAAGGTTGACAAGCAAACCTTAGAT
GCTGCTTTGTCATCCAAAGCCGAGCGGACCGACCTGGCCCGCATCGAAGC
CTCAGCCGCCCAAACCTTAGATGCTGCTTTGTCATCCAAAGCCGAGCGGA
CCGACCTGGCCCGCATCGAAGCCTCAGCCGCC
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