prot_H-paniculata_contig4412.11163.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4412.11163.1
Unique Nameprot_H-paniculata_contig4412.11163.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 8.830e-27
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 49
            MKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct:  207 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 255          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 8.830e-27
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 49
            MKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct:    1 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 49          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C4EX94_9BACT (ZnF_CHCC domain-containing protein n=1 Tax=Elusimicrobia bacterium TaxID=2030800 RepID=A0A7C4EX94_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 3.680e-16
Identity = 28/49 (57.14%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 49
            +K +GR  +  CPFHQ++TPSFS++  +G YHCFGCG  GDV +FLM V
Sbjct:   28 LKKSGRNWLALCPFHQEKTPSFSINQEKGFYHCFGCGEGGDVFSFLMAV 76          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A0M3AWC1_9SPHN (DNA primase n=2 Tax=Sphingobium chungbukense TaxID=56193 RepID=A0A0M3AWC1_9SPHN)

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-15
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 0
Query:    2 KPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 48
            K   R M+G CPFH ++TPSF V+D++G+YHC GCGASGD +TFLMQ
Sbjct:   44 KRGAREMVGLCPFHSEKTPSFEVNDNKGAYHCHGCGASGDALTFLMQ 90          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7K0ZDW4_9ACTN (DNA primase n=8 Tax=root TaxID=1 RepID=A0A7K0ZDW4_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 2.020e-15
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 49
            ++ AGRG +G CPFH +RTPSFSV+D  G Y CFGCGA GDV TF+ Q+
Sbjct:   27 LRRAGRGQVGLCPFHSERTPSFSVNDETGRYMCFGCGAKGDVFTFVQQM 75          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A316TUY3_9BACT (ZnF_CHCC domain-containing protein n=1 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316TUY3_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 2.720e-15
Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 49
            +K +G GM GCCPFH+++TPSF V D +G Y CFGCG  GD I FLM++
Sbjct:   28 LKRSGNGMKGCCPFHEEKTPSFHVSDQKGIYKCFGCGLGGDAIDFLMRI 76          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A349U054_9PROT (DNA primase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349U054_9PROT)

HSP 1 Score: 77.8 bits (190), Expect = 2.760e-15
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFPSA 60
            ++  GR M  CCPFH+++TPSF V+D +G YHCFGCGA GD+I F+MQ       PFP A
Sbjct:   27 LRRTGREMGACCPFHKEKTPSFHVNDEKGFYHCFGCGAHGDIIGFVMQYEN---LPFPEA 83          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C9GQU4_9SPHN (DNA primase n=1 Tax=Polymorphobacter fuscus TaxID=1439888 RepID=A0A7C9GQU4_9SPHN)

HSP 1 Score: 77.0 bits (188), Expect = 2.810e-15
Identity = 28/48 (58.33%), Postives = 39/48 (81.25%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 48
            ++  GR ++G CPFH +RTPSF V+D +G +HCFGCGA+GDV+ F+MQ
Sbjct:   28 LRRVGRELVGLCPFHDERTPSFGVNDDKGMFHCFGCGANGDVVRFVMQ 75          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.700e-15
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 0
Query:    8 MIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 48
            M GCCPFH D+TPS SVDD++G YHCFGCGA GDVI F+M+
Sbjct:   37 MKGCCPFHDDKTPSLSVDDAKGLYHCFGCGAGGDVIKFVME 77          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A534TIF0_9DELT (DNA primase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TIF0_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 3.770e-15
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 0
Query:    1 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFP 58
            +K  GR  IG CPFH ++TPSF+V++ RG +HCFGCGA G+V +FLM++     APFP
Sbjct:   29 LKRVGRNHIGLCPFHSEKTPSFTVNEDRGIFHCFGCGAGGNVFSFLMRLEA---APFP 83          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3B8_ECTSI8.830e-2793.88DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE8.830e-2793.88Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7C4EX94_9BACT3.680e-1657.14ZnF_CHCC domain-containing protein n=1 Tax=Elusimi... [more]
A0A0M3AWC1_9SPHN1.700e-1563.83DNA primase n=2 Tax=Sphingobium chungbukense TaxID... [more]
A0A7K0ZDW4_9ACTN2.020e-1563.27DNA primase n=8 Tax=root TaxID=1 RepID=A0A7K0ZDW4_... [more]
A0A316TUY3_9BACT2.720e-1559.18ZnF_CHCC domain-containing protein n=1 Tax=Rhodoha... [more]
A0A349U054_9PROT2.760e-1555.00DNA primase n=2 Tax=Alphaproteobacteria TaxID=2821... [more]
A0A7C9GQU4_9SPHN2.810e-1558.33DNA primase n=1 Tax=Polymorphobacter fuscus TaxID=... [more]
A0A835YIS2_9STRA3.700e-1573.17Toprim domain-containing protein (Fragment) n=1 Ta... [more]
A0A534TIF0_9DELT3.770e-1555.17DNA primase n=1 Tax=Deltaproteobacteria bacterium ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002694Zinc finger, CHC2-typeSMARTSM00400primzinc3coord: 8..55
e-value: 9.1E-19
score: 78.3
IPR002694Zinc finger, CHC2-typePFAMPF01807zf-CHC2coord: 2..50
e-value: 1.0E-20
score: 73.4
IPR036977DNA Primase, CHC2-type zinc fingerGENE3D3.90.580.10coord: 1..60
e-value: 6.8E-22
score: 79.0
NoneNo IPR availablePANTHERPTHR30313DNA PRIMASEcoord: 2..49
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 2..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4412contigH-paniculata_contig4412:246..428 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4412.11163.1mRNA_H-paniculata_contig4412.11163.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4412 246..446 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4412.11163.1 ID=prot_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVS
VCLCAPFPSA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002694Znf_CHC2
IPR036977DNA_primase_Znf_CHC2