mRNA_H-paniculata_contig4412.11163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.890e-30 Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
+G+HVEMKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct: 201 IGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 255
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.560e-26 Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1
Query: 19 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
MKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct: 1 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 49
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C9GQU4_9SPHN (DNA primase n=1 Tax=Polymorphobacter fuscus TaxID=1439888 RepID=A0A7C9GQU4_9SPHN) HSP 1 Score: 85.1 bits (209), Expect = 3.550e-18 Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
VGR V+++ GR ++G CPFH +RTPSF V+D +G +HCFGCGA+GDV+ F+MQ
Sbjct: 22 VGRRVKLRRVGRELVGLCPFHDERTPSFGVNDDKGMFHCFGCGANGDVVRFVMQ 75
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C0XBF4_9BACT (DNA primase (Fragment) n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7C0XBF4_9BACT) HSP 1 Score: 80.9 bits (198), Expect = 6.770e-18 Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
+G++VE+K +GR G CPFH+++TPSF VD +G YHCFGCGASG+V F+M++
Sbjct: 19 IGQYVELKRSGRSYKGLCPFHREKTPSFYVDPEKGVYHCFGCGASGNVFRFIMEM 73
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: UPI000262C870 (CHC2 zinc finger domain-containing protein n=1 Tax=Sphingobium yanoikuyae TaxID=13690 RepID=UPI000262C870) HSP 1 Score: 84.0 bits (206), Expect = 1.050e-17 Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
+ RHV+++ G M+G CPFH DRTPSF V D++G YHCFGCGA+GD ++FLM+
Sbjct: 26 IARHVKLRKRGVQMVGLCPFHADRTPSFEVSDTKGVYHCFGCGAAGDHVSFLME 79
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: UPI0013DAA404 (DNA primase n=1 Tax=Sandarakinorhabdus rubra TaxID=2672568 RepID=UPI0013DAA404) HSP 1 Score: 84.0 bits (206), Expect = 1.110e-17 Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFL 156
VGR V++ AGR M GCCPFH ++TPSF V+D +G YHCFGCGA GDVI FL
Sbjct: 21 VGRRVKLTRAGREMKGCCPFHNEKTPSFYVNDDKGFYHCFGCGAHGDVIRFL 72
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A534TIF0_9DELT (DNA primase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TIF0_9DELT) HSP 1 Score: 84.7 bits (208), Expect = 1.290e-17 Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFP 192
VG H+ +K GR IG CPFH ++TPSF+V++ RG +HCFGCGA G+V +FLM++ APFP
Sbjct: 23 VGAHIGLKRVGRNHIGLCPFHSEKTPSFTVNEDRGIFHCFGCGAGGNVFSFLMRLEA---APFP 83
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A349U054_9PROT (DNA primase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349U054_9PROT) HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17 Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFPSA 198
VGR + ++ GR M CCPFH+++TPSF V+D +G YHCFGCGA GD+I F+MQ PFP A
Sbjct: 21 VGRRIPLRRTGREMGACCPFHKEKTPSFHVNDEKGFYHCFGCGAHGDIIGFVMQYEN---LPFPEA 83
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: T0KJM1_9SPHN (ZnF_CHCC domain-containing protein n=1 Tax=Sphingobium ummariense RL-3 TaxID=1346791 RepID=T0KJM1_9SPHN) HSP 1 Score: 83.2 bits (204), Expect = 1.540e-17 Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query: 1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
VGRHV+++ AG +G CPFH + TPSF V+D++G +HCFGCGA GDVI FL V
Sbjct: 5 VGRHVKLRKAGHEYVGLCPFHDENTPSFRVNDAKGLFHCFGCGAGGDVIDFLTHV 59
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 1.690e-17 Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 1 VGRHVEMKPAGR-GMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
+G HV++ +G M GCCPFH D+TPS SVDD++G YHCFGCGA GDVI F+M+
Sbjct: 23 IGEHVKLTSSGHTSMKGCCPFHDDKTPSLSVDDAKGLYHCFGCGAGGDVIKFVME 77 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4412.11163.1 >prot_H-paniculata_contig4412.11163.1 ID=prot_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSback to top mRNA from alignment at H-paniculata_contig4412:246..446- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4412.11163.1 ID=mRNA_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig4412:246..446- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4412:246..446- >mRNA_H-paniculata_contig4412.11163.1 ID=mRNA_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4412:246..446- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |