mRNA_H-paniculata_contig4412.11163.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4412.11163.1
Unique NamemRNA_H-paniculata_contig4412.11163.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: D7G3B8_ECTSI (DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3B8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.890e-30
Identity = 50/55 (90.91%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
            +G+HVEMKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct:  201 IGQHVEMKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 255          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A6H5K157_9PHAE (Toprim domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K157_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.560e-26
Identity = 46/49 (93.88%), Postives = 49/49 (100.00%), Query Frame = 1
Query:   19 MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
            MKPAGRGM+GCCPFH+DRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ+
Sbjct:    1 MKPAGRGMVGCCPFHEDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQI 49          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C9GQU4_9SPHN (DNA primase n=1 Tax=Polymorphobacter fuscus TaxID=1439888 RepID=A0A7C9GQU4_9SPHN)

HSP 1 Score: 85.1 bits (209), Expect = 3.550e-18
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
            VGR V+++  GR ++G CPFH +RTPSF V+D +G +HCFGCGA+GDV+ F+MQ
Sbjct:   22 VGRRVKLRRVGRELVGLCPFHDERTPSFGVNDDKGMFHCFGCGANGDVVRFVMQ 75          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A7C0XBF4_9BACT (DNA primase (Fragment) n=1 Tax=candidate division WOR-3 bacterium TaxID=2052148 RepID=A0A7C0XBF4_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 6.770e-18
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
            +G++VE+K +GR   G CPFH+++TPSF VD  +G YHCFGCGASG+V  F+M++
Sbjct:   19 IGQYVELKRSGRSYKGLCPFHREKTPSFYVDPEKGVYHCFGCGASGNVFRFIMEM 73          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: UPI000262C870 (CHC2 zinc finger domain-containing protein n=1 Tax=Sphingobium yanoikuyae TaxID=13690 RepID=UPI000262C870)

HSP 1 Score: 84.0 bits (206), Expect = 1.050e-17
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
            + RHV+++  G  M+G CPFH DRTPSF V D++G YHCFGCGA+GD ++FLM+
Sbjct:   26 IARHVKLRKRGVQMVGLCPFHADRTPSFEVSDTKGVYHCFGCGAAGDHVSFLME 79          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: UPI0013DAA404 (DNA primase n=1 Tax=Sandarakinorhabdus rubra TaxID=2672568 RepID=UPI0013DAA404)

HSP 1 Score: 84.0 bits (206), Expect = 1.110e-17
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFL 156
            VGR V++  AGR M GCCPFH ++TPSF V+D +G YHCFGCGA GDVI FL
Sbjct:   21 VGRRVKLTRAGREMKGCCPFHNEKTPSFYVNDDKGFYHCFGCGAHGDVIRFL 72          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A534TIF0_9DELT (DNA primase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534TIF0_9DELT)

HSP 1 Score: 84.7 bits (208), Expect = 1.290e-17
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFP 192
            VG H+ +K  GR  IG CPFH ++TPSF+V++ RG +HCFGCGA G+V +FLM++     APFP
Sbjct:   23 VGAHIGLKRVGRNHIGLCPFHSEKTPSFTVNEDRGIFHCFGCGAGGNVFSFLMRLEA---APFP 83          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A349U054_9PROT (DNA primase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A349U054_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-17
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVSVCLCAPFPSA 198
            VGR + ++  GR M  CCPFH+++TPSF V+D +G YHCFGCGA GD+I F+MQ       PFP A
Sbjct:   21 VGRRIPLRRTGREMGACCPFHKEKTPSFHVNDEKGFYHCFGCGAHGDIIGFVMQYEN---LPFPEA 83          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: T0KJM1_9SPHN (ZnF_CHCC domain-containing protein n=1 Tax=Sphingobium ummariense RL-3 TaxID=1346791 RepID=T0KJM1_9SPHN)

HSP 1 Score: 83.2 bits (204), Expect = 1.540e-17
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 VGRHVEMKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQV 165
            VGRHV+++ AG   +G CPFH + TPSF V+D++G +HCFGCGA GDVI FL  V
Sbjct:    5 VGRHVKLRKAGHEYVGLCPFHDENTPSFRVNDAKGLFHCFGCGAGGDVIDFLTHV 59          
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Match: A0A835YIS2_9STRA (Toprim domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.690e-17
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 VGRHVEMKPAGR-GMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQ 162
            +G HV++  +G   M GCCPFH D+TPS SVDD++G YHCFGCGA GDVI F+M+
Sbjct:   23 IGEHVKLTSSGHTSMKGCCPFHDDKTPSLSVDDAKGLYHCFGCGAGGDVIKFVME 77          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4412.11163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3B8_ECTSI1.890e-3090.91DNA primase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K157_9PHAE1.560e-2693.88Toprim domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7C9GQU4_9SPHN3.550e-1859.26DNA primase n=1 Tax=Polymorphobacter fuscus TaxID=... [more]
A0A7C0XBF4_9BACT6.770e-1856.36DNA primase (Fragment) n=1 Tax=candidate division ... [more]
UPI000262C8701.050e-1759.26CHC2 zinc finger domain-containing protein n=1 Tax... [more]
UPI0013DAA4041.110e-1767.31DNA primase n=1 Tax=Sandarakinorhabdus rubra TaxID... [more]
A0A534TIF0_9DELT1.290e-1754.69DNA primase n=1 Tax=Deltaproteobacteria bacterium ... [more]
A0A349U054_9PROT1.300e-1754.55DNA primase n=2 Tax=Alphaproteobacteria TaxID=2821... [more]
T0KJM1_9SPHN1.540e-1760.00ZnF_CHCC domain-containing protein n=1 Tax=Sphingo... [more]
A0A835YIS2_9STRA1.690e-1761.82Toprim domain-containing protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4412contigH-paniculata_contig4412:246..446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog2880.D7G3B8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA primase catalytic core, N-terminal domain
EggNOG OGs2S0EV@2759,COG0358@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.5568776-CDS-H-paniculata_contig4412:245..4281622930331.5568776-CDS-H-paniculata_contig4412:245..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 246..428 -
1691481245.0903995-CDS-H-paniculata_contig4412:245..4281691481245.0903995-CDS-H-paniculata_contig4412:245..428Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4412 246..428 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.5741632-UTR-H-paniculata_contig4412:428..4461622930331.5741632-UTR-H-paniculata_contig4412:428..446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4412 429..446 -
1691481245.100018-UTR-H-paniculata_contig4412:428..4461691481245.100018-UTR-H-paniculata_contig4412:428..446Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4412 429..446 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4412.11163.1prot_H-paniculata_contig4412.11163.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4412 246..428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4412.11163.1

>prot_H-paniculata_contig4412.11163.1 ID=prot_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MKPAGRGMIGCCPFHQDRTPSFSVDDSRGSYHCFGCGASGDVITFLMQVS
VCLCAPFPSA*
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mRNA from alignment at H-paniculata_contig4412:246..446-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4412.11163.1 ID=mRNA_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig4412:246..446- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGGAAGGCACGTGGAGATGAAGCCGGCCGGTCGGGGCATGATCGGATG TTGTCCCTTTCACCAGGACAGAACGCCTTCCTTTTCTGTCGACGACTCGA GGGGGTCCTACCATTGCTTCGGATGCGGCGCTAGCGGTGACGTCATCACT TTCTTGATGCAGGTGAGTGTGTGTCTGTGTGCACCGTTTCCTTCTGCTTG A
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Coding sequence (CDS) from alignment at H-paniculata_contig4412:246..446-

>mRNA_H-paniculata_contig4412.11163.1 ID=mRNA_H-paniculata_contig4412.11163.1|Name=mRNA_H-paniculata_contig4412.11163.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig4412:246..446- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCCGGCCGGTCGGGGCATGATCGGATGTTGTCCCTTTCACCAGGA
CAGAACGCCTTCCTTTTCTGTCGACGACTCGAGGGGGTCCTACCATTGCT
TCGGATGCGGCGCTAGCGGTGACGTCATCACTTTCTTGATGCAGGTGAGT
GTGTGTCTGTGTGCACCGTTTCCTTCTGCTTGAATGAAGCCGGCCGGTCG
GGGCATGATCGGATGTTGTCCCTTTCACCAGGACAGAACGCCTTCCTTTT
CTGTCGACGACTCGAGGGGGTCCTACCATTGCTTCGGATGCGGCGCTAGC
GGTGACGTCATCACTTTCTTGATGCAGGTGAGTGTGTGTCTGTGTGCACC
GTTTCCTTCTGCTTGA
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