mRNA_H-paniculata_contig441.11160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig441.11160.1
Unique NamemRNA_H-paniculata_contig441.11160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig441.11160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig441contigH-paniculata_contig441:9221..16465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size625
Cds size624
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig441.11160.1prot_H-paniculata_contig441.11160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig441 9221..16465 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930331.0891275-CDS-H-paniculata_contig441:9220..95801622930331.0891275-CDS-H-paniculata_contig441:9220..9580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 9221..9580 -
1691481244.9072764-CDS-H-paniculata_contig441:9220..95801691481244.9072764-CDS-H-paniculata_contig441:9220..9580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 9221..9580 -
1622930331.117047-CDS-H-paniculata_contig441:15385..155711622930331.117047-CDS-H-paniculata_contig441:15385..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 15386..15571 -
1691481244.9224002-CDS-H-paniculata_contig441:15385..155711691481244.9224002-CDS-H-paniculata_contig441:15385..15571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 15386..15571 -
1622930331.130756-CDS-H-paniculata_contig441:16387..164651622930331.130756-CDS-H-paniculata_contig441:16387..16465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 16388..16465 -
1691481244.9372034-CDS-H-paniculata_contig441:16387..164651691481244.9372034-CDS-H-paniculata_contig441:16387..16465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig441 16388..16465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig441.11160.1

>prot_H-paniculata_contig441.11160.1 ID=prot_H-paniculata_contig441.11160.1|Name=mRNA_H-paniculata_contig441.11160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
WDCARGGVYKDMLMAAIPRLDAPAAQVHFDFDANGQAVGTANTSGDNLLA
GDARRIDAGNKRGGTGRVRSGGLPDADQEGCREYTRHLAEARRHHLGGVA
ATRALYLAGEDGRGRQLVVFCPELASSPSSVSPSPLSINADSGKSLVKPS
PCSDRTRRGKKATLSRASKKSSVNDHGEISSDGGGVTVGKGKGDHEDEVL
MPAGGDAA
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mRNA from alignment at H-paniculata_contig441:9221..16465-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig441.11160.1 ID=mRNA_H-paniculata_contig441.11160.1|Name=mRNA_H-paniculata_contig441.11160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7245bp|location=Sequence derived from alignment at H-paniculata_contig441:9221..16465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGATTGTGCGCGCGGGGGGGTTTATAAGGATATGCTGATGGCAGCCAT
CCCGCGATTAGACGCGCCAGCAGCTCAGGTGCCTTGGAATTTTTGCCGTT
TGCTTCTTTTGTTATGGCCTATCATCGTCATTATTGAATTCTGTTACTCA
AGCTATAACATGTTTGGAGTTTGGAGCAGTTCATGAAACCTCAAAAGCTA
GAGAGAGGCAGGCGCACAGGCAGATAGTACAGGTAATCACTGTTGTAGCT
GAAGATAGTGTAGAAGAGACGGGTAACAATGACACAAGCTGACCGCATGC
CTGTGTAGTTAGTTTGGCTAGCGTGTTTGGCTGTGTGCATGTGCAATATA
GTGTATAGAACCTTGTGGCATCACTACAGCATCTCTCACACACATGCGGA
ACACCCCAAAAACAGACCAACGGTTGCGCTGCTTTCCCAAATTCCCAACT
GGATGGAGAATGTGAGATCATACCACATGTAGATACCTATACACTCTCTA
TACTGTTGCCCGAAGCCAAATAATAGAGACAAGCGGAAACGGGCGTGTGA
CTCTACCGTCTCTATCGCGCACGAGCTAAAGAGTAAATCCTGAAGCAATC
TATACGCACGGGGTTCAGGGGACAACACTTCAAAACCTTTTCATCCCACT
TATCTTCAAATCATACAAGAATAAATACGGTCAGCTTGTAACCGTGCTGT
GATGCAACAAACGGATCCACCTTCCCAAGGACACCAAGCTTGGATTAGAA
CATCACAGCGTCCCTAAAGTCTAAGCCGCACCATGCCACCAGCAGCTTCT
CGTGGCCTATGATGATACCCCCTCCCCGCGGCACTCTGTTGATGTTACGC
AACCACTTTTGTTACATAATCAGTATACACAACAACACTTACAGGTTCAT
TTCGATTTCGACGCCAACGGTCAAGCTGTGGGGACTGCCAATACCAGCGG
GGATAATCTGCTAGCAGGCGATGCAAGGAGGATTGACGCGGGGAATAAAA
GAGGTGGCACCGGCAGAGTGAGGAGCGGGGGGCTGCCAGACGCTGATCAG
GAGGGCTGTCGGGAGTACACTCGACACCTGGTGCGTGCTCGTATTTGAAT
ATCTCATGTGCGCCTGTACGGGTCTCATCTACTGTCTGTACTGTCTCTTC
GAGTCTGTCCGATCTCTCTGTCTAGCGTTCAAGGATAGGAAAATCAATAT
GAGATGTGCATTACACTATTAACAGCACAGTTTGGAGACGAATTGGTTGA
TGGGTAGGTCTTGGTACCCACTGTGGGACTTAACACTCTGAAATAACACA
CACGGCAGAATTCGCGGACATACATACGGATCAAAGATATAGTTGGCTGC
TGTTGGTCCTGTTGTGTTGTACAATCGTGCGAGTCATGGAGAGGGTTGTG
AGATGATTGATGCCTATTGTGTGTGATGCTCTAAATCGCTGTTGTTAGTG
TTACGCACGTGCCCCAAAAACAATTCATTGTGCTGTGCATGCTTATTAAG
TATTTGATGTACTGCTGCGGTACCATCCAGCACACTCGTCCAAGTAGATA
ATAATCAATTGGCTAACCCTTTACCGTGTGCACGACGAACAATTAATTAA
CGGCGAAGCCAAAGATGGTTGTGTTGTACATCGTGCTTGAACTTGGAATT
GTATTGACTATTTCGGCGTCCGACCTTGAACTGTATGACCAACTCAATAA
TTGCAGTGGTTTTGTTATGTGGACATCTCAGTCAGTACAAGCTGCAGTTG
TTGAGGTGGGCTTTCGACAACCGTCAGTCTTGTAAATGCTTTGGAAATGA
ATAAATGGTACTCTGGTACCTTGGCTGTATGACGGCTAAATTTGTACCAA
CGACCGATCTGAGATATGGGTCTTGTCTTTTTTTATTCTTTGGGCTACGG
TCTGGATGGGAGCCGTCACTGTTCGGACAGAGAGACAGTAATCCAATTCG
GGCAAATGGCAAATGTGGCATATAGATACGGGAGTTGGCGAGGTTCTGCG
ATGCACGTCAACGAGATCGGGCTCAACGTCTGTTCTTCGTCCGATTCATT
TTGTTCCGCAACATCAAAGAGCCTCCTTCCTGGACCCAAATGCCTCATGT
TTCTATCTAGAGGTTGTGCTGCTTCTCCTCAGCTCTGGATGCGCGCGCGG
TTAGGTTGGTGCACTGTACGATCAGTCAGGGTATCTTTTGTATATGTATT
TCTACAATTATTGGGCATTTGGATCAGGGGAAAAGCAGTTGGTCGCTATT
CAGGGCACCATAAGTTCTTCCCCCCCTCCCTAACATACAGTGCTTTCCTA
TTTCCTGTACCGGTCACTTTACTGCACTGACTATCCGTATCCAATTTCCA
CCGCTCGTCCGGATTATTCAATATCCGCTTAAATGTGACAATCCGATCCC
GATATGATCCACAAAATTGCAGCAAATTCAGTAGCTTGCAATGCCGGGAT
TCTGCACGGTACATATGCTCGAATAAAATTGCTGCATTCGCGACAGACGC
TAGGAAGTTCCTCTTACGCCGGTATGGCCACTTCTAGCGAGCACGTTTTG
GGCAGAAATGATGAAATCTGGAAATTTGCGGCTAACTCTTCAAAGAGCCC
CAAATTCCTGAATATATAATTTATCCCCTTTGAAAATCTTTTGAAAAGAA
GTGTCGAAAGCAGGAGTACGTGTACAGTTTTTTTCTGGAAGCCCAACGCC
GAAGTACCGATCATGCCACCACTCGTACTCTCATATGTCGACCCTGACGA
CTACTGTGGCGGGCTGCCAGTTCCCCTATCTGTGGGTACCGCCGCGCATA
ACAGGACGCCATACAAGTATTGACCATTGCTGGCTAGGGAACTCTCCGCA
GATGCCGGTGCTTCCCTCTCTTCATCGTGTTGCTGTTACACCTGTGTCCC
CGGGCAGATAGAAATACACGCAGGATGTTTTAGCACTACAGCAAGTGTTT
ATTCGTACTCTACTTCAGTGTCTACTTCCTTCCGTAACCGAGCGCAACTC
TATGTACTGACTATATCATCGTACCTGCGCTCTCCAGCTGACTGCCACCG
CTCGATGGAACCGATTTGAGAACTGCAGTCTGTCACCCGTACGACCTCCA
CATCAACTGTCTAGCACCGGGGGGGGGTGTTGCCCCAACAGCAAATCAGC
CATGCACCTGTAATGGTTACAATATAAATGGTCACTTTGACCCCGTTCAC
TCCTACAGTCCTTGGTTAATATTTAGTTCGTCCCCGATTTCTTATCTGTG
TCCCACGTTTCCTACTTTCATGTGATGTTACAACGTTGTGATGTCACGTT
CGCCGACATATATTTCGTCCGTTCGTAATCGTTACCCCCATTCCCTCAAC
CTGGGACACGAGGCTGGGCTTTCGCATCTTGGAAAATGTCACACTGCAGC
CCCCCCAGGGAGTCGAATGGTTAAAAGGTGTCGCATGGTCGAACGGAAAT
ATAATCGGTTATACAGTGGGTGGCCCCTGTCAAGACACACCGTAAGACCC
GCGATTTTAAGGAGTATGTACCTAAAAAGGGATTTGGGTATGCCTTAGAA
GGGGTGCAAAAGTGTGTGCGCAACATGTAGGACGTGCGTATGTGGTGGGA
ATGTGTTGTATCCGACTCGTGGATCGTTAACCAAAGCATGAGGACCACCG
AAGATGGTGTCCTAGTTAGATTTATCTTGTTTTCATTAGTTGCTACGTTG
CTTGGGCGAGGGTACCCAGTACAGCACCAAATATAGCGCATCCTTCGGCA
GAACAGAGAAATAGCAACAAAAGTTACGACTATGACCCCAAAGCAATAAG
CCCAAACACACTTGGCCTGCTATGTAAAGTCACAAACGAAATCCCACAAC
GAATATCCCACCACCGCAACAAAAAACGAAGTTCCTAAAACATTTCGTAC
CGTAGGAGTAACGAAACAACACGTAGGAGCTATTAATAGATACCGAATGA
AAACTACCGCAAAAATCGCCATCTCTTTGGCTCATGGACAAATGCACGGT
TCGTTAAACCCCGTTGCGGGTTTCAAGAAGAGACCGCGGAAGAGTTCGCG
TATCGGTCTGGCGAGTAGGTCGCCCACAGTATGCTTGGATGAAAGCCATC
TTGGTCTTACGAAGCCCTGCACACGCCCCCTCAGTCCCACACTGCTTAGC
GTACTCCTCTACACTAGTAGCTAGTCGGAAATACTGCAACTATTGGTATG
TGCCCCTTTTAAGACGCATTGTGCACTTCAAGCGGGAGCCCGTTAGGGAC
ACGCAATTTGAGTGCCCTAAAGGGGCATGTGCCTTAATAGGGGGTTTGCC
TTAGAAGCGAGGCCACCCACTGACTGCACGTGTATCAACAGAATCGACCT
CCTCGAAAATTTGAAATCTGGGAACATCGGCTTTTTGAGCGTTCTACCAA
ATGTTCCACCCAGAATTAATTTCCCGTTTTCCAGATGTCATCGTTGCCGC
CCAAACCGTTCTTAGGTTGGTTGCTGGTAAATAATGAACGAAGACCCATT
GTAAACCGGTTGTATGAAGGGAGTTTTTTGGGGGGAGGATTGAGATACAA
TAGAAAAAGGGAATCGAGATGCTGGTATTTTAGATCAATTATGGCAGTAG
CTGCATGCTATCATAAGAAATCTTTTGAGCCACATCAGTAATTTGTTGGG
TAGTATTTTTTGGAGAAGCTACTGAATACATGACAACATAAGACACCTTA
ACAAGGTGTCAATAAAACACACAGTATACAACGCACTGTAGTATATTTTT
GAGATCATGAAGTGTGGCTGTCGCTACTTGGCTCACTTCAATTGGTTTCA
AACCGCTGAGAAGACGAGGGGTCCCAGATCTGCTCAAGCGCGTATGGCTG
AAAGCGGGATCGCAACTCGCGACCCCTGGAGATGTGCACAAAATCTGGGT
AAATGGCTGCTTCACCGGGAGAGCCATCTATACCACTTCACCCTGTCAAA
TATATATTTACCAGTACATATTAACTAACCCCTTTAAGTCCACAGTGCCA
AACGAAGTATGACAGACATACGGAAAGGAACGATTGTTCCTGGGGTTGCA
CGACAACGCTTGTATACATCCACTGGGATACGCATCCCCGCTGCCAGGTG
ATAAGCAGCTAGTGTCATACTTTTGCAGGTCCAGCAGCCTGACTGTGTAC
AATACAGGCAGCCGATAGAGAGAGAAGAAGAGAGAGGCGGTGGTGTACTG
CCCTCACTCATCATGCTTTGACGCTATGTTCTCGCAGCACGGTAGCAGAG
GAGCACACGGCACCTTGATGGAACCCATGACACCGTACCCTTCACCAGAG
CACAGCAGCTCACATTGTCATAATGGTGACAGAAGCAGGAATTTTGTTGG
AAAATTCTTCTGTTGATGTTCAGTGAAAAATAATCACGAGAAAAAACACT
TTGTGGTCCGCCTACGCACCTTGTACTGATCATTTTCCAATTTTTACCAA
TCCTGGGCAGCCCCCCCCCCCCCGCCCCCATGAGCCCTGGACTATCAACT
CCAGATAATCAAAACATTTTGGCGTGGCGCCAGCAGGATTAAATAATGCG
TGAAGAACGTCCCAAAAGTTTTCCACGTCTGGCTTTCTTGGGCAGCATTG
CAAGCTAACTTTGCAGCGAATCTTCAGTCGGCCATTTAAATCTTGAGAAG
ATCGGCGTGCGTTTTGTCTTGTCTTGCTTGATCTGTTGTATTCTAAAGGT
AGACTTGCAGTTTGTTGGGTCCTTGTTGAGTCAACATGTATGATCTATTT
TGTGTTCTTAAATTGTTGATTTGAGTTCGTGTGCCCAGCAAAGAGCTGCG
AGTGACATTAACCACAGCCCTGAATCCACTGTATTGGTAATACTCATTGC
TTGCACCCAGCCAAACCAGTATCGAATCCGGCCCTGGTAACCATTCTGAA
ATCGCTCGCAAACGCTGCGTTGCTCCGCGGTTTATCGTGTCGTCGACTCT
GGAGCATGTGTCTGGAGGGGTTTGGCAGTCGTACACCTCAGGAGAGCAAG
TAGTTACTAGTTGTTTCAATGAGTAAAACGAAAAACATGAGCCCGTATTA
TTCATCACACATTTGATCTGCACAAGAACTAATTTCTCATTTCTCGTGTG
TGATTTTTTTATCGGAAGATTGCAGAATAAGTACTTGGATTTAATGCGTG
GCAAAAACGAAGTTTCCCGACTCCGTTAAGAAACAGCCCAACAAGCAATA
TTAAACGAACGGCGAGCGTGTGGCATCTATCCTATTTTCCTATTCGCTTG
ATTCAGGGAACAAGAACCTGGGCATTTTTTATATCGTAGGGTCAACGATC
GACAACAGTGTTTTTGCTCTCATCAGCAGGTCAAACCATGGACTACATCA
AGCACACGGCGCCCTGGCTGCTGAGCCACCAGCCCTTGACGTACGTGAAT
ACTGTCAAAAAAGACAAAACCATGTTGCACCTAGCTGAGTGACTGAATCC
ACAGACCGACCAAATCATGTGCGGTTCGCTAGCTCGGGGGCGAATTGGAA
AATGACCATACAGTGTGAGAAGGATCCCCACACAAAATCTGAGTGCCATC
AGATCTTCTCTCTTCATTGAAAGAGGTTATTTTGGCACAGAAGAGGTATC
TGACACGAAAATATCAGAAGAGCTCCTCAGTCGTAGTGAGTAGAAGCATG
TCTATTTCTACCTGTACTGGACTGTCTTATCTTTCTGAAGAGGACCAGAT
CCTTTTTTGCCCGTAATTTTTATTGTCATGTCATATAATAGTCTTTGCTT
TCTCCTGTTTTTTAGGTGATCTGGATTAATTCGATGGGGATTATATGTAT
CACTCGATGATGGGAACCGGCGCTAACAGCATGTTACTATTATATTCTTC
CTCTTCGTCTCTCATCGAAAATAACCATACACTAGGCGGAAGCTCGGCGA
CACCACCTCGGCGGTGTAGCCGCCACCCGTGCCCTCTATCTCGCAGGCGA
GGACGGCCGTGGCCGACAGCTCGTCGTATTCTGCCCGGAACTAGCATCAT
CGCCATCATCGGTATCACCATCACCATTATCAATCAACGCTGACAGTGGA
AAGTCACTCGTCAAGCCTAGTCCCTGCTCAGACCGAACCCGGCGGGGCAA
AAAAGCCACATTATCCAGAGCGTCCAAAAAGTCCAGCGTTAACGACCACG
GCGAGATTAGCAGCGACGGCGGAGGCGTTACGGTCGGAAAGGGGAAAGGG
GATCATGAGGATGAAGTGCTGATGCCGGCCGGTGGCGATGCTGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig441:9221..16465-

>mRNA_H-paniculata_contig441.11160.1 ID=mRNA_H-paniculata_contig441.11160.1|Name=mRNA_H-paniculata_contig441.11160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig441:9221..16465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGATTGTGCGCGCGGGGGGGTTTATAAGGATATGCTGATGGCAGCCAT
CCCGCGATTAGACGCGCCAGCAGCTCAGTGGGATTGTGCGCGCGGGGGGG
TTTATAAGGATATGCTGATGGCAGCCATCCCGCGATTAGACGCGCCAGCA
GCTCAGGTTCATTTCGATTTCGACGCCAACGGTCAAGCTGTGGGGACTGC
CAATACCAGCGGGGATAATCTGCTAGCAGGCGATGCAAGGAGGATTGACG
CGGGGAATAAAAGAGGTGGCACCGGCAGAGTGAGGAGCGGGGGGCTGCCA
GACGCTGATCAGGAGGGCTGTCGGGAGTACACTCGACACCTGGTTCATTT
CGATTTCGACGCCAACGGTCAAGCTGTGGGGACTGCCAATACCAGCGGGG
ATAATCTGCTAGCAGGCGATGCAAGGAGGATTGACGCGGGGAATAAAAGA
GGTGGCACCGGCAGAGTGAGGAGCGGGGGGCTGCCAGACGCTGATCAGGA
GGGCTGTCGGGAGTACACTCGACACCTGGCGGAAGCTCGGCGACACCACC
TCGGCGGTGTAGCCGCCACCCGTGCCCTCTATCTCGCAGGCGAGGACGGC
CGTGGCCGACAGCTCGTCGTATTCTGCCCGGAACTAGCATCATCGCCATC
ATCGGTATCACCATCACCATTATCAATCAACGCTGACAGTGGAAAGTCAC
TCGTCAAGCCTAGTCCCTGCTCAGACCGAACCCGGCGGGGCAAAAAAGCC
ACATTATCCAGAGCGTCCAAAAAGTCCAGCGTTAACGACCACGGCGAGAT
TAGCAGCGACGGCGGAGGCGTTACGGTCGGAAAGGGGAAAGGGGATCATG
AGGATGAAGTGCTGATGCCGGCCGGTGGCGATGCTGCGGCGGAAGCTCGG
CGACACCACCTCGGCGGTGTAGCCGCCACCCGTGCCCTCTATCTCGCAGG
CGAGGACGGCCGTGGCCGACAGCTCGTCGTATTCTGCCCGGAACTAGCAT
CATCGCCATCATCGGTATCACCATCACCATTATCAATCAACGCTGACAGT
GGAAAGTCACTCGTCAAGCCTAGTCCCTGCTCAGACCGAACCCGGCGGGG
CAAAAAAGCCACATTATCCAGAGCGTCCAAAAAGTCCAGCGTTAACGACC
ACGGCGAGATTAGCAGCGACGGCGGAGGCGTTACGGTCGGAAAGGGGAAA
GGGGATCATGAGGATGAAGTGCTGATGCCGGCCGGTGGCGATGCTGCG
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